mRNA_7404 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164433
Unique NamemRNA_7404
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|164433 vs. uniprot
Match: A0A835Z3T2_9STRA (UPF0489 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T2_9STRA)

HSP 1 Score: 333 bits (853), Expect = 1.030e-115
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1 
Query:    1 MQADCATAAAAAAPTIPCHVVEDHHDALPFWHLAMRRKRLAQQGITMVHIDAHPDLCVTEDMQADICFQPRALYDALDNSVGGIAEWIIPLVYEGHLDTIWWLRPPWADQFTDGTYALGVGKSQATGEQLALLRLLASMTNIDASNLDTDGCGAVTNSMQ 480
            MQADCATAAAAAAPTIPCHVVEDHHDALPFWHLAMRRKRLAQQGITMVHIDAHPDLCVTEDMQADICFQPRALYDALDNSVGGIAEWIIPLVYEGHLDTIWWLRPPWADQFTDGTYALGVGKSQATGEQLALLRLLASMTNIDASNLDTDGCGAVTNSMQ
Sbjct:    1 MQADCATAAAAAAPTIPCHVVEDHHDALPFWHLAMRRKRLAQQGITMVHIDAHPDLCVTEDMQADICFQPRALYDALDNSVGGIAEWIIPLVYEGHLDTIWWLRPPWADQFTDGTYALGVGKSQATGEQLALLRLLASMTNIDASNLDTDGCGAVTNSMQ 160
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BLAST of jgi.p|Trimin1|164433 vs. uniprot
Match: D8LI72_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI72_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 6.090e-38
Identity = 64/115 (55.65%), Postives = 83/115 (72.17%), Query Frame = 1 
Query:   40 PTIPCHVVEDHHDALPFWHLAMRRKRLAQQGITMVHIDAHPDLCVTEDMQADICFQPRALYDALDNSVGGIAEWIIPLVYEGHLDTIWWLRPPWADQFTDGTYALGVGKSQATGE 384
            P++ C++V+DH DAL   H A+R   L   G++ VH DAHPDL VT DM A+ CF+P  LYD L  + GGIAEWI+PLVY+GHL T+WW+RP WA QFTDG +   VG+ +ATG+
Sbjct:   16 PSLRCYIVDDHCDALSKIHRAIRNGALPFTGLSAVHFDAHPDLMVTPDMPAETCFRPHELYDTLAQTEGGIAEWILPLVYQGHLSTLWWVRPRWARQFTDGDHRFCVGQVKATGK 130
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BLAST of jgi.p|Trimin1|164433 vs. uniprot
Match: G5ABA4_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5ABA4_PHYSP)

HSP 1 Score: 123 bits (309), Expect = 3.130e-33
Identity = 57/115 (49.57%), Postives = 79/115 (68.70%), Query Frame = 1 
Query:   43 TIPCHVVEDHHDALPFWHLAMRRKRLAQQGITMVHIDAHPDLCVTEDMQADICFQPRALYDALDNSVGGIAEWIIPLVYEGHLDTIWWLRPPWADQFTDGTYA-LGVGKSQATGE 384
            T+P  +V+DHH  L   HLA+R++RL   GI ++H+DAHPDL     M  ++ FQP  LYDALD+SV GIAE+++PLV+ GH++ I WL+P WA Q   G +  L +GK +A GE
Sbjct:    2 TLPVVIVDDHHHCLADIHLAIRQRRLPFSGIHVLHVDAHPDLSFPPAMDTEVIFQPDTLYDALDDSVAGIAEFLLPLVFAGHVNQITWLKPSWATQMPTGAFKQLAIGKRKANGE 116
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BLAST of jgi.p|Trimin1|164433 vs. uniprot
Match: D0N9M3_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N9M3_PHYIT)

HSP 1 Score: 114 bits (285), Expect = 7.450e-30
Identity = 51/113 (45.13%), Postives = 73/113 (64.60%), Query Frame = 1 
Query:   46 IPCHVVEDHHDALPFWHLAMRRKRLAQQGITMVHIDAHPDLCVTEDMQADICFQPRALYDALDNSVGGIAEWIIPLVYEGHLDTIWWLRPPWADQFTDGTYA-LGVGKSQATG 381
            +P  +V+DHH  LP  HLA+R++ L   GI ++H+DAHPDL         + F+P  LYD LD SV GIAE+++PLV+ GH++ I WL+P WA Q   G +  L +GK ++ G
Sbjct:    3 VPVVIVDDHHHCLPDIHLAIRQRLLPFAGIHVLHVDAHPDLSFPTSADTSVIFEPETLYDTLDKSVAGIAEFLLPLVFAGHVNQITWLKPSWATQMPTGAFKQLAIGKRKSNG 115
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BLAST of jgi.p|Trimin1|164433 vs. uniprot
Match: W2KW05_PHYPR (Uncharacterized protein n=14 Tax=Phytophthora parasitica TaxID=4792 RepID=W2KW05_PHYPR)

HSP 1 Score: 117 bits (293), Expect = 2.500e-28
Identity = 60/144 (41.67%), Postives = 85/144 (59.03%), Query Frame = 1 
Query:   43 TIPCHVVEDHHDALPFWHLAMRRKRLAQQGITMVHIDAHPDLCVTEDMQADICFQPRALYDALDNSVGGIAEWIIPLVYEGHLDTIWWLRPPWADQFTDGTYA-LGVGKSQATGEQLALLRL--------LASMTNIDASNLDT 447
            ++P  +V+DHH  LP  HLA+R++RL    I ++H+DAHPDL         + F+P  LYD LD SV GIAE+++PLV+ GH++ I WL+P WA Q   G +  L +GK ++ G   A   L          S+  IDAS+L T
Sbjct:    2 SVPVVIVDDHHHCLPDIHLAIRQRRLPFSDIHVLHVDAHPDLSFPTTTDTSVIFEPEKLYDKLDESVAGIAEFLLPLVFAGHVNQITWLKPSWATQMPTGAFRQLSIGKRKSNGGMGATSELPHFVEDELYCSVEEIDASSLRT 145
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BLAST of jgi.p|Trimin1|164433 vs. uniprot
Match: A0A7S3K368_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K368_9STRA)

HSP 1 Score: 114 bits (286), Expect = 5.170e-28
Identity = 56/115 (48.70%), Postives = 79/115 (68.70%), Query Frame = 1 
Query:   52 CHVVEDHHDALPFWHLAMRRKRLAQQGITMVHIDAHPDLCVTEDMQADICFQPRALYDALDNSVGGIAEWIIPLVYEGHLDTIWWLRPPWADQFTDGTYALGVGKSQATGEQLAL 396
            C +VE HHD LP+ HL MRRK +A +G+++VH DAHPDL   ++  AD+CF+PR L   LD S  GI+EW++PLVY GH+  I W++P +A Q  + T  + VGK +   E+LA+
Sbjct:   11 CVIVEQHHDVLPWLHLGMRRKVIATKGLSVVHFDAHPDLGALKN--ADVCFRPRELVQFLDESEYGISEWLLPLVYCGHVSRIVWVKPDFAKQIQNMTRIIRVGKCE---ERLAV 120
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BLAST of jgi.p|Trimin1|164433 vs. uniprot
Match: A0A813HJC0_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HJC0_POLGL)

HSP 1 Score: 117 bits (293), Expect = 7.190e-28
Identity = 53/114 (46.49%), Postives = 75/114 (65.79%), Query Frame = 1 
Query:   46 IPCHVVEDHHDALPFWHLAMRRKRLAQQGITMVHIDAHPDLCVTEDMQADICFQ-PRALYDALDNSVGGIAEWIIPLVYEGHLDTIWWLRPPWADQFTDGTYALGVGKSQATGE 384
            +P  V E H +AL   H+A+RR++L   G+TMVH+DAHPD+  +  + A++ FQ P  +Y AL +   GIA WI+P VY GHL+ +WW+RP WA Q  DG Y + VG++  T E
Sbjct:   31 LPVFVCEYHDEALRCLHVAIRRRKLPFDGLTMVHLDAHPDMSASTTLPAEVVFQEPWHVYSALRSDPSGIASWILPAVYGGHLNCVWWVRPEWARQIADGDYRVQVGRAVTTSE 144
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BLAST of jgi.p|Trimin1|164433 vs. uniprot
Match: A0A225WZN4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WZN4_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.020e-27
Identity = 53/109 (48.62%), Postives = 75/109 (68.81%), Query Frame = 1 
Query:   58 VVEDHHDALPFWHLAMRRKRLAQQGITMVHIDAHPDLCVTEDMQADICFQPRALYDALDNSVGGIAEWIIPLVYEGHLDTIWWLRPPWADQFTDGTYA-LGVGKSQATG 381
            VV+DHH  LP  HLA+R++RL    I ++H+DAHPDL     + A + FQP +LY+ LD SV GIAE+++PLV+ GH++ I WL+P WA Q  +G Y  L +GK ++ G
Sbjct:    5 VVDDHHHCLPDIHLAIRQRRLPFSEIHVLHVDAHPDLSFPAAVDASVIFQPDSLYELLDKSVAGIAEFLLPLVFAGHVNQISWLKPSWATQMPNGAYKQLAIGKRKSNG 113
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BLAST of jgi.p|Trimin1|164433 vs. uniprot
Match: A0A3M6VUH5_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VUH5_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.120e-27
Identity = 50/109 (45.87%), Postives = 73/109 (66.97%), Query Frame = 1 
Query:   58 VVEDHHDALPFWHLAMRRKRLAQQGITMVHIDAHPDLCVTEDMQADICFQPRALYDALDNSVGGIAEWIIPLVYEGHLDTIWWLRPPWADQFTDGTYA-LGVGKSQATG 381
            +V+DHH  LP  HLA+R++RL+   I +VH+DAHPDL     ++ D  F P  LY+ LD+SV GIAE+++PLVY GH+  I WL+P W+ Q   G++  + +GK +  G
Sbjct:    7 IVDDHHHCLPDIHLAIRQRRLSFSDIHVVHVDAHPDLSFPSAIKTDTIFDPETLYNILDDSVAGIAEFLLPLVYAGHVTQITWLKPSWSMQIPIGSFKQVVIGKRKING 115
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BLAST of jgi.p|Trimin1|164433 vs. uniprot
Match: A0A833SRU7_PHYIN (UPF0489 domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SRU7_PHYIN)

HSP 1 Score: 114 bits (285), Expect = 2.940e-27
Identity = 51/113 (45.13%), Postives = 73/113 (64.60%), Query Frame = 1 
Query:   46 IPCHVVEDHHDALPFWHLAMRRKRLAQQGITMVHIDAHPDLCVTEDMQADICFQPRALYDALDNSVGGIAEWIIPLVYEGHLDTIWWLRPPWADQFTDGTYA-LGVGKSQATG 381
            +P  +V+DHH  LP  HLA+R++ L   GI ++H+DAHPDL         + F+P  LYD LD SV GIAE+++PLV+ GH++ I WL+P WA Q   G +  L +GK ++ G
Sbjct:    3 VPVVIVDDHHHCLPDIHLAIRQRLLPFAGIHVLHVDAHPDLSFPTSADTSVIFEPETLYDTLDKSVAGIAEFLLPLVFAGHVNQITWLKPSWATQMPTGAFKQLAIGKRKSNG 115
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164433 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z3T2_9STRA1.030e-115100.00UPF0489 domain-containing protein n=1 Tax=Tribonem... [more]
D8LI72_ECTSI6.090e-3855.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
G5ABA4_PHYSP3.130e-3349.57Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
D0N9M3_PHYIT7.450e-3045.13Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
W2KW05_PHYPR2.500e-2841.67Uncharacterized protein n=14 Tax=Phytophthora para... [more]
A0A7S3K368_9STRA5.170e-2848.70Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A813HJC0_POLGL7.190e-2846.49Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A225WZN4_9STRA2.020e-2748.62Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A3M6VUH5_9STRA2.120e-2745.87Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A833SRU7_PHYIN2.940e-2745.13UPF0489 domain n=1 Tax=Phytophthora infestans TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_31contigContig_31:573994..574680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164433|e_gw1.31.180.1
GOsGO:0008150,GO:0009966,GO:0009968,GO:0010646,GO:0010648,GO:0023051,GO:0023057,GO:0046578,GO:0046580,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0051056,GO:0051058,GO:0065007,GO:1902531,GO:1902532
Preferred nameC5orf22
DescriptionUPF0489 domain
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs28PEW@1|root,2QW2U@2759|Eukaryota
Evalue9.98e-39
Seed ortholog2880.D8LI72
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUncharacterised protein family UPF0489
Ec32 orthologEc-14_003400.1
TranscriptId164755
TrackFilteredModels1
ProteinId164433
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164433gene_7404Tribonema minus UTEX_B_3156 geneContig_31 573994..574680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164433Trimin1|164433|e_gw1.31.180.1Tribonema minus UTEX_B_3156 polypeptideContig_31 573994..574680 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7404_2exon_7404_2Tribonema minus UTEX_B_3156 exonContig_31 573994..574218 -
exon_7404_1exon_7404_1Tribonema minus UTEX_B_3156 exonContig_31 574423..574680 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7404CDS_7404Tribonema minus UTEX_B_3156 CDSContig_31 574423..574680 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7404 ID=mRNA_7404|Name=jgi.p|Trimin1|164433|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=483bp|location=Sequence derived from alignment at Contig_31:573994..574680- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGCAGACTGCGCCACTGCAGCAGCAGCAGCTGCGCCCACAATCCC
TTGCCATGTCGTGGAGGATCATCACGATGCCCTCCCATTCTGGCATCTTG
CCATGCGCCGCAAGAGGCTGGCTCAGCAAGGCATCACCATGGTGCATATT
GATGCCCACCCTGATCTATGTGTCACGGAGGACATGCAGGCTGACATCTG
CTTCCAGCCCAGAGCTCTCTATGATGCCCTGGACAACAGCGTGGGGGGCA
TTGCCGAGTGGATCATTCCACTAGTGTACGAAGGCCATCTGGACACCATC
TGGTGGCTTCGACCGCCATGGGCAGACCAGTTTACGGACGGAACATATGC
TTTAGGAGTGGGCAAGTCGCAAGCTACTGGTGAGCAGCTGGCTTTGCTGC
GTTTGCTCGCATCAATGACAAATATAGACGCAAGCAATCTAGACACTGAC
GGCTGTGGGGCTGTCACAAACTCTATGCAGTAA
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protein sequence of jgi.p|Trimin1|164433

>Trimin1|164433|e_gw1.31.180.1 ID=Trimin1|164433|e_gw1.31.180.1|Name=jgi.p|Trimin1|164433|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=161bp
MQADCATAAAAAAPTIPCHVVEDHHDALPFWHLAMRRKRLAQQGITMVHI
DAHPDLCVTEDMQADICFQPRALYDALDNSVGGIAEWIIPLVYEGHLDTI
WWLRPPWADQFTDGTYALGVGKSQATGEQLALLRLLASMTNIDASNLDTD
GCGAVTNSMQ*
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mRNA from alignment at Contig_31:573994..574680-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7404 ID=mRNA_7404|Name=jgi.p|Trimin1|164433|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=687bp|location=Sequence derived from alignment at Contig_31:573994..574680- (Tribonema minus UTEX_B_3156 )
ATGCAAGCAGACTGCGCCACTGCAGCAGCAGCAGCTGCGCCCACAATCCC
TTGCCATGTCGTGGAGGATCATCACGATGCCCTCCCATTCTGGCATCTTG
CCATGCGCCGCAAGAGGCTGGCTCAGCAAGGCATCACCATGGTGCATATT
GATGCCCACCCTGATCTATGTGTCACGGAGGACATGCAGGCTGACATCTG
CTTCCAGCCCAGAGCTCTCTATGATGCCCTGGACAACAGCGTGGGGGGCA
TTGCCGAGGTACACGACGAATCCTCAGCAATGAGGTTGATGAATGTATCC
TCAGCATCTGACGTACCCGTGGTGCCATGATGCGATGTTCAACAGCAGAA
ACTTGACATGATCAGCTATCCGATGCATCTATCTGCTACTCGTGGTATTT
CAAAGTAGATGGGGAAATCCCTAACTGGAAGTGTGCTCCCCCCCTCATGC
TTGCTGTTCCAGTGGATCATTCCACTAGTGTACGAAGGCCATCTGGACAC
CATCTGGTGGCTTCGACCGCCATGGGCAGACCAGTTTACGGACGGAACAT
ATGCTTTAGGAGTGGGCAAGTCGCAAGCTACTGGTGAGCAGCTGGCTTTG
CTGCGTTTGCTCGCATCAATGACAAATATAGACGCAAGCAATCTAGACAC
TGACGGCTGTGGGGCTGTCACAAACTCTATGCAGTAA
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Coding sequence (CDS) from alignment at Contig_31:573994..574680-

>mRNA_7404 ID=mRNA_7404|Name=jgi.p|Trimin1|164433|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=483bp|location=Sequence derived from alignment at Contig_31:573994..574680- (Tribonema minus UTEX_B_3156 )
ATGCAAGCAGACTGCGCCACTGCAGCAGCAGCAGCTGCGCCCACAATCCC
TTGCCATGTCGTGGAGGATCATCACGATGCCCTCCCATTCTGGCATCTTG
CCATGCGCCGCAAGAGGCTGGCTCAGCAAGGCATCACCATGGTGCATATT
GATGCCCACCCTGATCTATGTGTCACGGAGGACATGCAGGCTGACATCTG
CTTCCAGCCCAGAGCTCTCTATGATGCCCTGGACAACAGCGTGGGGGGCA
TTGCCGAGTGGATCATTCCACTAGTGTACGAAGGCCATCTGGACACCATC
TGGTGGCTTCGACCGCCATGGGCAGACCAGTTTACGGACGGAACATATGC
TTTAGGAGTGGGCAAGTCGCAAGCTACTGGTGAGCAGCTGGCTTTGCTGC
GTTTGCTCGCATCAATGACAAATATAGACGCAAGCAATCTAGACACTGAC
GGCTGTGGGGCTGTCACAAACTCTATGCAGTAA
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