mRNA_7327 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155078
Unique NamemRNA_7327
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|155078 vs. uniprot
Match: A0A836CCH7_9STRA (Transmembrane subunit of succinate dehydrogenase/Fumarate reductase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCH7_9STRA)

HSP 1 Score: 262 bits (670), Expect = 1.650e-88
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1 
Query:    1 SAAQAASQRVESHSYDELQQRRGRPISPHVTNYRFPIAAISSITNRITGVALVGGLYGIGALSLVGVDAQHIMSVIHDSILAGPVKLVVTFPLIYHYFAAARHTIWDFYPETVENKSVEKSSLLIFAAAGSLSLAAACL 417
            SAAQAASQRVESHSYDELQQRRGRPISPHVTNYRFPIAAISSITNRITGVALVGGLYGIGALSLVGVDAQHIMSVIHDSILAGPVKLVVTFPLIYHYFAAARHTIWDFYPETVENKSVEKSSLLIFAAAGSLSLAAACL
Sbjct:    1 SAAQAASQRVESHSYDELQQRRGRPISPHVTNYRFPIAAISSITNRITGVALVGGLYGIGALSLVGVDAQHIMSVIHDSILAGPVKLVVTFPLIYHYFAAARHTIWDFYPETVENKSVEKSSLLIFAAAGSLSLAAACL 139
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BLAST of jgi.p|Trimin1|155078 vs. uniprot
Match: A0A835YMP1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP1_9STRA)

HSP 1 Score: 163 bits (412), Expect = 5.350e-49
Identity = 85/132 (64.39%), Postives = 103/132 (78.03%), Query Frame = 1 
Query:    7 AQAASQRVESHSYDELQQRRGRPISPHVTNYRFPIAAISSITNRITGVALVGGLYGIGALSLVGVDAQHIMSVIHDSILAGPVKLVVTFPLIYHYFAAARHTIWDFYPETVENKSVEKSSLLIFAAAGSLSL 402
            A A S R+ S  Y E Q + GRP+SPHVT YRFP+ AISSITNR+TGV LVGGLYGIGAL+LVGVD Q +M+++ ++ +A   K+VVTFPLIYHY  AARHTIWDF PETV N SV +SS ++F AAG L+L
Sbjct:   19 ATAGSTRILS-DYIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTL 149
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BLAST of jgi.p|Trimin1|155078 vs. uniprot
Match: D8LD41_ECTSI (SDH3, succinate dehydrogenase subunit 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD41_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 2.490e-37
Identity = 67/124 (54.03%), Postives = 85/124 (68.55%), Query Frame = 1 
Query:   31 ESHSYDELQQRRGRPISPHVTNYRFPIAAISSITNRITGVALVGGLYGIGALSLVGVDAQHIMSVIHDSILAGPVKLVVTFPLIYHYFAAARHTIWDFYPETVENKSVEKSSLLIFAAAGSLSL 402
            E  SY   Q R GRP+SPHVT Y FP AA+SSI NR+TGVALV GLYGI   +LVG DA  +MS +  S +   VKL V+FPL+YHY  A RHT+WD+ PET++   V K+S  +   +G++SL
Sbjct:   48 EKESYTARQARTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGATLVGCDAAGLMSALGSSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPETLQTAGVAKTSYALLGVSGAVSL 171
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BLAST of jgi.p|Trimin1|155078 vs. uniprot
Match: A0A7S1XVJ2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVJ2_9STRA)

HSP 1 Score: 116 bits (290), Expect = 3.420e-30
Identity = 61/119 (51.26%), Postives = 79/119 (66.39%), Query Frame = 1 
Query:   43 YDELQQRRGRPISPHVTNYRFPIAAISSITNRITGVALVGGLYGIGALSLVGVDAQHIMSVIHDSILAGPVKLVVTFPLIYHYFAAARHTIWDFYPETVENKSVEKSSLLIFAAAGSLS 399
            Y   Q++ GRP+SPHVT Y FP  AISSI+ R+TG  L  GL GIGAL+LVGVD   +MS +  S +    K  V++ L+YH+F AARH +WD  PE +EN  V ++SL I  AAG +S
Sbjct:   55 YSARQKKTGRPVSPHVTIYAFPAVAISSISVRVTGCILSVGLGGIGALALVGVDTPALMSAVGSSAIGPLAKFAVSYSLVYHFFGAARHYVWDQSPEMLENDQVYQTSLGIMGAAGVIS 173
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BLAST of jgi.p|Trimin1|155078 vs. uniprot
Match: A0A8J2SI31_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SI31_9STRA)

HSP 1 Score: 112 bits (281), Expect = 3.910e-29
Identity = 65/124 (52.42%), Postives = 80/124 (64.52%), Query Frame = 1 
Query:   43 YDELQQRRGRPISPHVTNYRFPIAAISSITNRITGVALVGGLYGIGALSLVGVDAQHIMSVIHDSILAGPVKLVVTFPLIYHYFAAARHTIWDFYPETV-ENKSVEKSSLLIFAAAGSLSLAAA 411
            Y E Q++ GRP+SPHVT Y FP  AISSIT R+TGV L  G+ G+ A SL GVD    M+ +  ++   PVK +V FPL YHY  A RHT+WD  PET+  NK  EKSS L+    G  +LAAA
Sbjct:   31 YTERQEKLGRPMSPHVTTYAFPAVAISSITQRVTGVLLSVGVGGVAAGSLAGVD----MAALATAVSCYPVKFIVAFPLTYHYAGALRHTLWDRKPETMLNNKDAEKSSYLVM---GGSTLAAA 147
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BLAST of jgi.p|Trimin1|155078 vs. uniprot
Match: A0A7S3MID7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MID7_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.660e-28
Identity = 63/134 (47.01%), Postives = 84/134 (62.69%), Query Frame = 1 
Query:   19 SQRVESHSYDELQQRRGRPISPHVTNYRFPIAAISSITNRITGVALVGGLYGIGALSLVGVDAQHIMSVIHD-SILAGPVKLVVTFPLIYHYFAAARHTIWDFYPETVENKSVEKSSLLIFAAAGSLSLAAACL 417
            S  V + SY E Q ++GRPISPHV  Y+FP AA++SITNR+TG  L  G+ GIG L+L G D   IMS I D S++    KL V FPL+YHY A  RH  WD  PE +    V +SS ++  ++ ++S+  A L
Sbjct:   23 SSNVNNGSYSEEQAKKGRPISPHVEIYKFPPAALTSITNRVTGGLLSVGMTGIGVLALAGADVSSIMSNIGDISVVGQTAKLSVAFPLVYHYLAGIRHIAWDRNPELLHTDKVTQSSHVLIGSSVAISVVLALL 156
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BLAST of jgi.p|Trimin1|155078 vs. uniprot
Match: A0A7S4AFF3_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AFF3_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.650e-28
Identity = 64/126 (50.79%), Postives = 84/126 (66.67%), Query Frame = 1 
Query:   40 SYDELQQRRGRPISPHVTNYRFPIAAISSITNRITGVALVGGLYGIGALSL-VGVDAQ-HIMSVIHDS--ILAGPVKLVVTFPLIYHYFAAARHTIWDFYPET-VENKSVEKSSLLIFAAAGSLSL 402
            +Y+E  +R GRP+SPHVT Y  PIAA++SITNRITGV L  G  GIGAL L VG      +M  I  S  ++A   KL V FP++YHY  A RH +WD+YP+  + N +V KSS ++F +AG +SL
Sbjct:   43 NYNERMKRTGRPVSPHVTIYALPIAAVASITNRITGVMLSFGGLGIGALELAVGPGTSLTVMESIGSSGFLVASSAKLAVAFPVVYHYLGALRHFVWDYYPDKFLNNDAVAKSSTVLFGSAGLISL 168
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BLAST of jgi.p|Trimin1|155078 vs. uniprot
Match: A0A8K1CGD2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGD2_PYTOL)

HSP 1 Score: 108 bits (271), Expect = 1.760e-27
Identity = 64/126 (50.79%), Postives = 75/126 (59.52%), Query Frame = 1 
Query:   40 SYDELQQRRGRPISPHVTNYRFPIAAISSITNRITGVALVGGLYGIGALSLVGVDAQHIMSVIHDSI--LAGPVKLVVTFPLIYHYFAAARHTIWDFYPETVENKSVEKSSLLIFAAAGSLSLAAA 411
            +Y E Q R GRP+SP VT Y+FPI A+SSITNR TGV L  G     AL+ VGVD   ++    D I   A   K +V FP+ YH FAAARH +WD  PE +      KSS  IF AA  LSL AA
Sbjct:   30 TYTERQARLGRPVSPAVTIYKFPITALSSITNRATGVGLAAGFTAASALAAVGVDLPSVIYAAQDVIPGFAPISKFLVAFPITYHSFAAARHVVWDKNPELINKIDGPKSSYAIFGAATVLSLGAA 155
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BLAST of jgi.p|Trimin1|155078 vs. uniprot
Match: A0A2D4BV84_PYTIN (Transmembrane protein, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BV84_PYTIN)

HSP 1 Score: 108 bits (270), Expect = 2.230e-27
Identity = 60/125 (48.00%), Postives = 73/125 (58.40%), Query Frame = 1 
Query:   43 YDELQQRRGRPISPHVTNYRFPIAAISSITNRITGVALVGGLYGIGALSLVGVDAQHIMSVIHDSI--LAGPVKLVVTFPLIYHYFAAARHTIWDFYPETVENKSVEKSSLLIFAAAGSLSLAAA 411
            Y E Q R GRP+SPHVT YRFPI A+SS+TNR T V L  G      L+ VGVD   ++     +I   A   K  + FP+ YH  AAARH +WD  PE + N    KSS  +F AAG +SL AA
Sbjct:   28 YTERQARLGRPVSPHVTIYRFPITAVSSVTNRFTSVGLTAGFAAASGLAAVGVDIPSLIYAAQGAIPGFAPISKFFIAFPISYHSLAAARHVLWDAKPELINNIDGPKSSYAVFGAAGLISLGAA 152
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BLAST of jgi.p|Trimin1|155078 vs. uniprot
Match: A0A1Z5JV10_FISSO (Succinate dehydrogenase (Ubiquinone) cytochrome b560 subunit n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JV10_FISSO)

HSP 1 Score: 108 bits (269), Expect = 4.480e-27
Identity = 56/124 (45.16%), Postives = 80/124 (64.52%), Query Frame = 1 
Query:   40 SYDELQQRRGRPISPHVTNYRFPIAAISSITNRITGVALVGGLYGIGALSLVGVDAQHI--MSVIHDS--ILAGPVKLVVTFPLIYHYFAAARHTIWDFYPETVENKSVEKSSLLIFAAAGSLS 399
            +Y +  +  GRP+SPHVT Y FP  A+SSITNR+TG AL  G  G+G + LVG     +  M  I     ++A   K  V+FP++YHYFAA RH +WD  PE +EN++V++SS  +F A+ ++S
Sbjct:   46 NYSKRMKETGRPVSPHVTVYAFPTVALSSITNRVTGCALSVGCAGLGLVELVGGTGTSLSLMQTIGSQGFVVAAAAKFTVSFPIVYHYFAAIRHFMWDAKPEMLENQAVQQSSYYLFGASAAIS 169
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BLAST of jgi.p|Trimin1|155078 vs. uniprot
Match: A0A835YPN0_9STRA (NADH dehydrogenase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPN0_9STRA)

HSP 1 Score: 196 bits (498), Expect = 1.480e-63
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 
Query:    1 VAQGLRNAIFKSGGGFLGGSTAPIMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMRLL 297
            VAQGLRNAIFKSGGGFLGGSTAPIMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMRLL
Sbjct:    1 VAQGLRNAIFKSGGGFLGGSTAPIMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMRLL 99
[Close]
BLAST of jgi.p|Trimin1|155078 vs. uniprot
Match: D7FPR2_ECTSI (NADH dehydrogenase (Ubiquinone) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPR2_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 3.600e-30
Identity = 55/99 (55.56%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:    1 VAQGLRNAIFKSGGGFLGGSTAPIMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMRLL 297
            +A GL N + KS G    G+ +P   LYR+I +E+PR+LTIYDVDMD A AR  +   FR NGHL+DP V+  +V KGYM+LEET +Q+KQ+THL+RLL
Sbjct:    1 MASGLGNYMMKSVGPSRTGTASPATQLYRAIAKEVPRILTIYDVDMDFAQARAAIALYFRNNGHLKDPRVVDALVMKGYMDLEETTMQYKQKTHLLRLL 99
[Close]
BLAST of jgi.p|Trimin1|155078 vs. uniprot
Match: A0A4D9D5Z3_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5Z3_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.740e-28
Identity = 52/93 (55.91%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:   28 FKSGGGFLGGSTAP---IMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMRLL 297
            FK+   ++G    P   ++ LYR+I +E+PRVLTIYD D+ PA AR +V  LFRKN HLQDP ++ ++V KGYMELEET++Q+KQ+THL+RLL
Sbjct:    3 FKAVASYMGKEKTPRNPVVQLYRTISKELPRVLTIYDADLAPAEARAQVQVLFRKNAHLQDPVIVDMLVKKGYMELEETLMQWKQKTHLLRLL 95
[Close]
BLAST of jgi.p|Trimin1|155078 vs. uniprot
Match: A0A485LSK2_9STRA (Aste57867_25210 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LSK2_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.050e-22
Identity = 44/83 (53.01%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:   49 LGGSTAPIMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMRLL 297
            LGGST P + LYR I +++PRVLT+YD+ M+PA AR  V   FRKN  ++DP V+ ++++K  MELEET++Q+KQ+ HL  LL
Sbjct:   10 LGGST-PAVTLYRQITKQVPRVLTLYDISMEPAQARLAVQAFFRKNADVKDPRVVDMLITKAGMELEETLMQWKQKAHLQTLL 91
[Close]
BLAST of jgi.p|Trimin1|155078 vs. uniprot
Match: A0A7S3GV22_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GV22_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 6.290e-22
Identity = 43/76 (56.58%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:   70 IMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMRLL 297
            +  LYRSI +E+PRVL IYDVDM    A+  +   FRK+GHL+D  VI ++++KGYMELEET++Q+KQ+THL+R+L
Sbjct:   20 VSQLYRSIIKELPRVLIIYDVDMPMKTAKTAIQYHFRKHGHLKDGNVIGMLMAKGYMELEETLMQWKQKTHLLRVL 95
[Close]
BLAST of jgi.p|Trimin1|155078 vs. uniprot
Match: A0A067CET6_SAPPC (Complex1_LYR_dom domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CET6_SAPPC)

HSP 1 Score: 90.9 bits (224), Expect = 1.480e-21
Identity = 41/79 (51.90%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:   61 TAPIMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMRLL 297
            T P + LYR I +++PRVLT+YD++M+P  AR  V   FRKN  ++DP VI +++SK  MELEET++Q+KQ++HL+ LL
Sbjct:    7 TNPAVTLYRHITKQVPRVLTLYDINMEPREARLAVQAFFRKNAEIKDPRVIDMLISKANMELEETLMQWKQKSHLLTLL 85
[Close]
BLAST of jgi.p|Trimin1|155078 vs. uniprot
Match: A0A024FTL2_9STRA (Complex1_LYR_dom domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024FTL2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.750e-21
Identity = 39/79 (49.37%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:   61 TAPIMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMRLL 297
            ++P + LYR I +++PRVLT+YD+ M+P+ AR  +  LFRKN +++DP V+ ++++K  MELEET+LQ+KQ+ HL+ LL
Sbjct:   15 SSPAVTLYRYIIKQVPRVLTLYDITMEPSEARLAIQALFRKNANIKDPRVVDMLITKANMELEETLLQWKQKVHLLTLL 93
[Close]
BLAST of jgi.p|Trimin1|155078 vs. uniprot
Match: K3W7P5_GLOUD (Complex1_LYR_dom domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W7P5_GLOUD)

HSP 1 Score: 90.5 bits (223), Expect = 3.310e-21
Identity = 40/82 (48.78%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:   52 GGSTAPIMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMRLL 297
            G +++P + LYR I +++PRVLT+YD+ M+PA AR  V  LFRK+  ++DP V+ ++++K  MELEET++Q+KQ+ HL+ LL
Sbjct:   12 GKTSSPAVTLYRYITKQVPRVLTLYDISMEPAEARLAVQALFRKHADVKDPRVVDMLITKANMELEETLMQWKQKVHLLTLL 93
[Close]
BLAST of jgi.p|Trimin1|155078 vs. uniprot
Match: A0A1V9YKZ4_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YKZ4_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.500e-21
Identity = 41/79 (51.90%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:   61 TAPIMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMRLL 297
            T P + LYR I +++PRVLT+YD++M+P  AR  V   FRKN  ++DP VI +++SK  MELEET++Q+KQ+ HL+ LL
Sbjct:   13 TNPAVTLYRHITKQVPRVLTLYDINMEPREARLAVQAFFRKNAEIKDPRVIDMLISKANMELEETLMQWKQKAHLVTLL 91
[Close]
BLAST of jgi.p|Trimin1|155078 vs. uniprot
Match: A0A6S8YN63_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8YN63_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 6.150e-21
Identity = 40/75 (53.33%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:   67 PIMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMR 291
            P   LYRSI +E+PRV+TIYD+D+    AR  + + FRKN HL+D  V+ +++  GYM+LEET+LQ KQR+HL+R
Sbjct:   18 PSARLYRSIVKELPRVMTIYDIDVPLPEARNSIRDHFRKNAHLKDDRVVSMLIETGYMDLEETLLQHKQRSHLIR 92
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155078 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CCH7_9STRA1.650e-88100.00Transmembrane subunit of succinate dehydrogenase/F... [more]
A0A835YMP1_9STRA5.350e-4964.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LD41_ECTSI2.490e-3754.03SDH3, succinate dehydrogenase subunit 3 n=2 Tax=Ec... [more]
A0A7S1XVJ2_9STRA3.420e-3051.26Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A8J2SI31_9STRA3.910e-2952.42Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3MID7_9STRA1.660e-2847.01Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S4AFF3_9STRA2.650e-2850.79Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
A0A8K1CGD2_PYTOL1.760e-2750.79Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BV84_PYTIN2.230e-2748.00Transmembrane protein, putative n=1 Tax=Pythium in... [more]
A0A1Z5JV10_FISSO4.480e-2745.16Succinate dehydrogenase (Ubiquinone) cytochrome b5... [more]

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BLAST of jgi.p|Trimin1|155078 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YPN0_9STRA1.480e-63100.00NADH dehydrogenase (Fragment) n=1 Tax=Tribonema mi... [more]
D7FPR2_ECTSI3.600e-3055.56NADH dehydrogenase (Ubiquinone) n=2 Tax=Ectocarpus... [more]
A0A4D9D5Z3_9STRA1.740e-2855.91Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A485LSK2_9STRA3.050e-2253.01Aste57867_25210 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S3GV22_9STRA6.290e-2256.58Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A067CET6_SAPPC1.480e-2151.90Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
A0A024FTL2_9STRA2.750e-2149.37Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
K3W7P5_GLOUD3.310e-2148.78Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A1V9YKZ4_9STRA3.500e-2151.90Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A6S8YN63_9STRA6.150e-2153.33Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_55contigContig_55:725362..726218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155078|gw1.55.192.1
BiGG ReactioniMM904.YMR118C,iND750.YMR118C
BRITEko00000,ko00001,ko00002
KEGG rclassRC00045
KEGG ReactionR02164
KEGG ModuleM00009,M00011,M00148
KEGG Pathwayko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko04714,ko04932,ko05010,ko05012,ko05016,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map04714,map04932,map05010,map05012,map05016
KEGG koko:K00236
GOsGO:0000104,GO:0002376,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005749,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006105,GO:0006119,GO:0006121,GO:0006139,GO:0006163,GO:0006605,GO:0006626,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0006979,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008177,GO:0008340,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0010259,GO:0015031,GO:0015833,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016310,GO:0016491,GO:0016627,GO:0016635,GO:0016999,GO:0017038,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0019866,GO:0020037,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042721,GO:0042742,GO:0042773,GO:0042775,GO:0042886,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045087,GO:0045184,GO:0045257,GO:0045273,GO:0045281,GO:0045283,GO:0045333,GO:0046034,GO:0046483,GO:0046906,GO:0046907,GO:0048037,GO:0048518,GO:0048519,GO:0048583,GO:0048584,GO:0048585,GO:0048856,GO:0050789,GO:0050829,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0055085,GO:0055086,GO:0055114,GO:0061024,GO:0065002,GO:0065007,GO:0070469,GO:0070585,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072350,GO:0072521,GO:0072594,GO:0072655,GO:0072657,GO:0080134,GO:0090150,GO:0090151,GO:0097159,GO:0098542,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1902882,GO:1902883,GO:1902884,GO:1990204,GO:1990542
Preferred nameSDHC
Descriptionsuccinate dehydrogenase activity
COG categoryC
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2009@1|root,KOG0449@2759|Eukaryota
Evalue4.08e-38
Seed ortholog2880.D8LD41
Hectar predicted targeting categoryother localisation
TranscriptId155400
TrackFilteredModels1
ProteinId155078
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155078gene_7327Tribonema minus UTEX_B_3156 geneContig_55 725362..726218 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7327_1exon_7327_1Tribonema minus UTEX_B_3156 exonContig_55 725362..725524 +
exon_7327_2exon_7327_2Tribonema minus UTEX_B_3156 exonContig_55 725965..726218 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7327CDS_7327Tribonema minus UTEX_B_3156 CDSContig_55 725362..725524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155078Trimin1|155078|gw1.55.192.1Tribonema minus UTEX_B_3156 polypeptideContig_55 725362..726218 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7327 ID=mRNA_7327|Name=jgi.p|Trimin1|155078|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=417bp|location=Sequence derived from alignment at Contig_55:725362..726218+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TCAGCAGCGCAAGCGGCCTCGCAGCGTGTTGAATCCCACAGCTACGATGA
GCTACAACAGCGCCGTGGAAGGCCGATTTCGCCGCATGTAACGAACTATC
GGTTCCCGATTGCAGCCATATCCTCTATCACCAACAGGATTACTGGCGTC
GCCCTCGTTGGAGGCCTCTACGGCATCGGAGCGCTGTCACTGGTAGGAGT
GGATGCTCAGCACATCATGTCCGTCATCCACGACTCCATACTGGCGGGAC
CCGTGAAGCTTGTCGTCACATTTCCGCTCATCTACCACTACTTTGCAGCT
GCACGGCACACCATCTGGGACTTTTACCCAGAAACGGTTGAAAACAAGTC
TGTGGAGAAGTCCAGCTTGCTGATCTTTGCGGCGGCTGGTTCCCTATCGC
TGGCTGCAGCATGTCTT
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protein sequence of jgi.p|Trimin1|155078

>Trimin1|155078|gw1.55.192.1 ID=Trimin1|155078|gw1.55.192.1|Name=jgi.p|Trimin1|155078|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=139bp
SAAQAASQRVESHSYDELQQRRGRPISPHVTNYRFPIAAISSITNRITGV
ALVGGLYGIGALSLVGVDAQHIMSVIHDSILAGPVKLVVTFPLIYHYFAA
ARHTIWDFYPETVENKSVEKSSLLIFAAAGSLSLAAACL
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mRNA from alignment at Contig_55:725362..726218+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7327 ID=mRNA_7327|Name=jgi.p|Trimin1|155078|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=857bp|location=Sequence derived from alignment at Contig_55:725362..726218+ (Tribonema minus UTEX_B_3156 )
TCAGCAGCGCAAGCGGCCTCGCAGCGTGTTGAATCCCACAGCTACGATGA
GCTACAACAGCGCCGTGGAAGGCCGATTTCGCCGCATGTAACGAACTATC
GGTTCCCGATTGCAGCCATATCCTCTATCACCAACAGGATTACTGGCGTC
GCCCTCGTTGGAGGTACGTTTTGAGTCATCGGTTTGGGCAAACACAGAAC
ACGCTGGAAATCTCTCACCATGTAAATTGTAACTACCGATGGTGTGAGAT
GCCCTGAGACTCTGGAACGGCGTGAGAAGTTCAGGCACCGATGCAATTCT
AGTATGCGCGGTCATATTCGAGTGTCACATCAGTCCAAGAGCATGCCTTC
AGCCAGGGCCTCAGGCTCATATCCGTCATGCTATGTACACAAAGATGGCG
AGAGGCAGCCCCCAACAGCATGCGGCAAAAAAATTCTAGCTGCCTGCTGC
CGCCGCAGCAGCTGTGTCGCCTAGCTACAAGATTCATTTGCTTTGTGTCC
TCCCATCCTTCGTCCACCTCCACATACGAGCAACGGCTGCTCTCATTGAC
GCTTCTACACTGTTAACCACACAATGCACACGTGCTCTCTCTGCACTCGA
CAGGCCTCTACGGCATCGGAGCGCTGTCACTGGTAGGAGTGGATGCTCAG
CACATCATGTCCGTCATCCACGACTCCATACTGGCGGGACCCGTGAAGCT
TGTCGTCACATTTCCGCTCATCTACCACTACTTTGCAGCTGCACGGCACA
CCATCTGGGACTTTTACCCAGAAACGGTTGAAAACAAGTCTGTGGAGAAG
TCCAGCTTGCTGATCTTTGCGGCGGCTGGTTCCCTATCGCTGGCTGCAGC
ATGTCTT
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Coding sequence (CDS) from alignment at Contig_55:725362..726218+

>mRNA_7327 ID=mRNA_7327|Name=jgi.p|Trimin1|155078|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=417bp|location=Sequence derived from alignment at Contig_55:725362..726218+ (Tribonema minus UTEX_B_3156 )
TCAGCAGCGCAAGCGGCCTCGCAGCGTGTTGAATCCCACAGCTACGATGA
GCTACAACAGCGCCGTGGAAGGCCGATTTCGCCGCATGTAACGAACTATC
GGTTCCCGATTGCAGCCATATCCTCTATCACCAACAGGATTACTGGCGTC
GCCCTCGTTGGAGGCCTCTACGGCATCGGAGCGCTGTCACTGGTAGGAGT
GGATGCTCAGCACATCATGTCCGTCATCCACGACTCCATACTGGCGGGAC
CCGTGAAGCTTGTCGTCACATTTCCGCTCATCTACCACTACTTTGCAGCT
GCACGGCACACCATCTGGGACTTTTACCCAGAAACGGTTGAAAACAAGTC
TGTGGAGAAGTCCAGCTTGCTGATCTTTGCGGCGGCTGGTTCCCTATCGC
TGGCTGCAGCATGTCTT
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