mRNA_718 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157074
Unique NamemRNA_718
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|157074 vs. uniprot
Match: A0A835Z2K3_9STRA (Histone-fold-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2K3_9STRA)

HSP 1 Score: 446 bits (1148), Expect = 2.610e-158
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 1 
Query:    1 MATPKNSKKIPKKAAEGGKKRKASRTQSWGLYIYKVLKQVHPDTGASKRSMSIMNSFAGDVFERIASEAGRIARYTNKQTLSSHEVQTAVRLILPGELAKHSVSEGTKAITKYTAGTTGTKGGNSVRAGLQFPVGRICSMLKKGRYAKRVSAGAAVYLAAVLEYLCAEVLELGGNACRDLKKSRITPRHIKLAIAGDEELDKLARHVTIASGGVIPHIHKSLVPAKKGKTQA 696
            MATPKNSKKIPKKAAEGGKKRKASRTQSWGLYIYKVLKQVHPDTGASKRSMSIMNSFAGDVFERIASEAGRIARYTNKQTLSSHEVQTAVRLILPGELAKHSVSEGTKAITKYTAGTTGTKGGNSVRAGLQFPVGRICSMLKKGRYAKRVSAGAAVYLAAVLEYLCAEVLELGGNACRDLKKSRITPRHIKLAIAGDEELDKLARHVTIASGGVIPHIHKSLVPAKKGKTQA
Sbjct:    1 MATPKNSKKIPKKAAEGGKKRKASRTQSWGLYIYKVLKQVHPDTGASKRSMSIMNSFAGDVFERIASEAGRIARYTNKQTLSSHEVQTAVRLILPGELAKHSVSEGTKAITKYTAGTTGTKGGNSVRAGLQFPVGRICSMLKKGRYAKRVSAGAAVYLAAVLEYLCAEVLELGGNACRDLKKSRITPRHIKLAIAGDEELDKLARHVTIASGGVIPHIHKSLVPAKKGKTQA 232
[Close]
BLAST of jgi.p|Trimin1|157074 vs. uniprot
Match: A0A3L7HVC6_CRIGR (Histone H2A n=2 Tax=Amniota TaxID=32524 RepID=A0A3L7HVC6_CRIGR)

HSP 1 Score: 255 bits (651), Expect = 1.590e-82
Identity = 140/226 (61.95%), Postives = 168/226 (74.34%), Query Frame = 1 
Query:    4 ATPKNSKKIPKKAAE-GGKKRKASRTQSWGLYIYKVLKQVHPDTGASKRSMSIMNSFAGDVFERIASEAGRIARYTNKQTLSSHEVQTAVRLILPGELAKHSVSEGTKAITKYTAGTTGTKGGNSVRAGLQFPVGRICSMLKKGRYAKRVSAGAAVYLAAVLEYLCAEVLELGGNACRDLKKSRITPRHIKLAIAGDEELDKLARHVTIASGGVIPHIHKSLVPAK 678
            A  K SKK   KA +  GKKRK SR +S+ +Y+YKVLKQVHPDTG S ++M IMNSF  D+FERIA EA R+A Y  + T++S E+QTAVRL+LPGELAKH+VSEGTKA  K  A         S RAGLQFPVGR+  +L+KG Y++RV AGA VYLAAVLEYL AE+LEL GNA RD KK+RI PRH++LAI  DEEL+KL   VTIA GGV+P+I   L+P K
Sbjct:   10 APKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAGGKARAKAKT----RSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 231
[Close]
BLAST of jgi.p|Trimin1|157074 vs. uniprot
Match: A0A8J5ZYR3_GALPY (Histone H3.1 (Fragment) n=5 Tax=cellular organisms TaxID=131567 RepID=A0A8J5ZYR3_GALPY)

HSP 1 Score: 262 bits (669), Expect = 1.280e-81
Identity = 145/248 (58.47%), Postives = 176/248 (70.97%), Query Frame = 1 
Query:    4 ATPKNSKK-IPKKAAEGGKKRKASRTQSWGLYIYKVLKQVHPDTGASKRSMSIMNSFAGDVFERIASEAGRIARYTNKQTLSSHEVQTAVRLILPGELAKHSVSEGTKAITKYTAGTT--------------GTKGGN--------SVRAGLQFPVGRICSMLKKGRYAKRVSAGAAVYLAAVLEYLCAEVLELGGNACRDLKKSRITPRHIKLAIAGDEELDKLARHVTIASGGVIPHIHKSLVPAK 678
            A  K SKK I K   + GKKRK SR +S+ +Y+YKVLKQVHPDTG S ++M IMNSF  D+FERIA EA R+A Y  + T++S E+QTAVRL+LPGELAKH+VSEGTKA+TKYT+                 G +GG         S RAGLQFPVGR+  +L+KG Y++RV AGA VYLAAVLEYL AE+LEL GNA RD KK+RI PRH++LAI  DEEL+KL   VTIA GGV+P+I   L+P K
Sbjct:   15 APKKGSKKTITKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSKNPGFGSLVFLKMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 262
[Close]
BLAST of jgi.p|Trimin1|157074 vs. uniprot
Match: A0A667Z0M6_9TELE (Uncharacterized protein n=3 Tax=Euacanthomorphacea TaxID=123369 RepID=A0A667Z0M6_9TELE)

HSP 1 Score: 249 bits (637), Expect = 1.570e-80
Identity = 133/229 (58.08%), Postives = 166/229 (72.49%), Query Frame = 1 
Query:    4 ATPKNSKK-IPKKAAEGGKKRKASRTQSWGLYIYKVLKQVHPDTGASKRSMSIMNSFAGDVFERIASEAGRIARYTNKQTLSSHEVQTAVRLILPGELAKHSVSEGTKAITKYTAGTTGTKGGNSVRAGLQFPVGRICSMLKKGRYAKRVSAGAAVYLAAVLEYLCAEVLELGGNACRDLKKSRITPRHIKLAIAGDEELDKLARHVTIASGGVIPHIHKSLVPAKKGK 687
            A  K SKK + K A +GGKKR+ +R +S+ +Y+YKVLKQVHPDTG S ++M IMNSF  D+FERIA EA R+A Y  + T++S E+QTAVRL+LPGELAKH+VSEGTKA+TKYT                   +GR+  +L+KG YA+RV AGA VYLAAVLEYL AE+LEL GNA RD KK+RI PRH++LA+  DEEL+KL   VTIA GGV+P+I   L+P K  K
Sbjct:   18 APKKGSKKAVSKTAGKGGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYT-------------------MGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTDK 227
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BLAST of jgi.p|Trimin1|157074 vs. uniprot
Match: A0A2A6CKF1_PRIPA (Histone H4 n=4 Tax=Pristionchus pacificus TaxID=54126 RepID=A0A2A6CKF1_PRIPA)

HSP 1 Score: 259 bits (662), Expect = 2.730e-80
Identity = 152/273 (55.68%), Postives = 179/273 (65.57%), Query Frame = 1 
Query:   10 PKNSKKIPKKAAE-------GGKKRKASRTQSWGLYIYKVLKQVHPDTGASKRSMSIMNSFAGDVFERIASEAGRIARYTNKQTLSSHEVQTAVRLILPGELAKHSVSEGTKAITKYTAGTTGT---------------------------------KGGN----------SVRAGLQFPVGRICSMLKKGRYAKRVSAGAAVYLAAVLEYLCAEVLELGGNACRDLKKSRITPRHIKLAIAGDEELDKLARHVTIASGGVIPHIHKSLVPAK 678
            PK S K  KKAA+       G KKR+ SR +S+ +YIY+VLKQVHPDTG S ++MSIMNSF  DVFERIA EA R+A Y  + T+SS E+QTAVRLILPGELAKH+VSEGTKA+TKYT+  T                                   KGG           S RAGLQFPVGR+  ML+KG YA+RV AGA VYLAAVLEYL AEVLEL GNA RD KK+RI PRH++LA+  DEEL+KL   VTIA GGV+P+I+  L+P K
Sbjct:   34 PKPSAKGAKKAAKSQKAVRTGDKKRRKSRKESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSSKTQRPSLGPQSYSKPTGLSSTLDALNEQSTVNMSGRGKGGKAKSGGKAKSRSSRAGLQFPVGRLHRMLRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRINPRHLQLAVRNDEELNKLMAGVTIAQGGVLPNINSVLLPKK 306
[Close]
BLAST of jgi.p|Trimin1|157074 vs. uniprot
Match: A0A672G2D8_SALFA (Uncharacterized protein n=3 Tax=Clupeocephala TaxID=186625 RepID=A0A672G2D8_SALFA)

HSP 1 Score: 248 bits (632), Expect = 1.570e-79
Identity = 134/229 (58.52%), Postives = 164/229 (71.62%), Query Frame = 1 
Query:    4 ATPKNSKK-IPKKAAEGGKKRKASRTQSWGLYIYKVLKQVHPDTGASKRSMSIMNSFAGDVFERIASEAGRIARYTNKQTLSSHEVQTAVRLILPGELAKHSVSEGTKAITKYTAGTTGTKGGNSVRAGLQFPVGRICSMLKKGRYAKRVSAGAAVYLAAVLEYLCAEVLELGGNACRDLKKSRITPRHIKLAIAGDEELDKLARHVTIASGGVIPHIHKSLVPAKKGK 687
            A  K SKK + K A +GGKKRK +R +S+ +Y+YKVLKQVHPDTG S ++MSIMNSF  D+FERIASEA R+A Y  + T+SS E+QTAVRL+LPGELAKH+VSEGTKA+TKYT+                        +L+KG Y +RV AGA VYLAAVLEYL AE+LEL GNA RD KK+RI PRH++LA+  DEEL+KL   VTIA GGV+P+I   L+P K  K
Sbjct:   38 APKKGSKKAVSKTAGKGGKKRKRTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS----------------------KLLRKGNYGERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEK 244
[Close]
BLAST of jgi.p|Trimin1|157074 vs. uniprot
Match: A0A3Q1CD26_AMPOC (Uncharacterized protein n=4 Tax=Clupeocephala TaxID=186625 RepID=A0A3Q1CD26_AMPOC)

HSP 1 Score: 246 bits (629), Expect = 2.330e-79
Identity = 133/229 (58.08%), Postives = 163/229 (71.18%), Query Frame = 1 
Query:    4 ATPKNSKK-IPKKAAEGGKKRKASRTQSWGLYIYKVLKQVHPDTGASKRSMSIMNSFAGDVFERIASEAGRIARYTNKQTLSSHEVQTAVRLILPGELAKHSVSEGTKAITKYTAGTTGTKGGNSVRAGLQFPVGRICSMLKKGRYAKRVSAGAAVYLAAVLEYLCAEVLELGGNACRDLKKSRITPRHIKLAIAGDEELDKLARHVTIASGGVIPHIHKSLVPAKKGK 687
            A  K SKK + K A +GGKKRK SR +S+ +Y+YKVLKQVHPDTG S ++M IMNSF  D+FERIA EA R+A Y  + T++S E+QTAVRL+LPGELAKH+VSEGTKA+TKYT+                        +L+KG YA+RV AGA VYLAAVLEYL AE+LEL GNA RD KK+RI PRH++LA+  DEEL+KL   VTIA GGV+P+I   L+P K  K
Sbjct:   18 APKKGSKKAVTKSAGKGGKKRKRSRKESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVSDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS----------------------KLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEK 224
[Close]
BLAST of jgi.p|Trimin1|157074 vs. uniprot
Match: A0A3Q1CCF9_AMPOC (Uncharacterized protein n=5 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3Q1CCF9_AMPOC)

HSP 1 Score: 246 bits (629), Expect = 2.410e-79
Identity = 133/229 (58.08%), Postives = 163/229 (71.18%), Query Frame = 1 
Query:    4 ATPKNSKK-IPKKAAEGGKKRKASRTQSWGLYIYKVLKQVHPDTGASKRSMSIMNSFAGDVFERIASEAGRIARYTNKQTLSSHEVQTAVRLILPGELAKHSVSEGTKAITKYTAGTTGTKGGNSVRAGLQFPVGRICSMLKKGRYAKRVSAGAAVYLAAVLEYLCAEVLELGGNACRDLKKSRITPRHIKLAIAGDEELDKLARHVTIASGGVIPHIHKSLVPAKKGK 687
            A  K SKK + K A +GGKKRK SR +S+ +Y+YKVLKQVHPDTG S ++M IMNSF  D+FERIA EA R+A Y  + T++S E+QTAVRL+LPGELAKH+VSEGTKA+TKYT+                        +L+KG YA+RV AGA VYLAAVLEYL AE+LEL GNA RD KK+RI PRH++LA+  DEEL+KL   VTIA GGV+P+I   L+P K  K
Sbjct:   19 APKKGSKKAVTKSAGKGGKKRKRSRKESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVSDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS----------------------KLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEK 225
[Close]
BLAST of jgi.p|Trimin1|157074 vs. uniprot
Match: A0A3B5PQY2_XIPMA (Uncharacterized protein n=4 Tax=Poeciliinae TaxID=586240 RepID=A0A3B5PQY2_XIPMA)

HSP 1 Score: 247 bits (630), Expect = 2.780e-79
Identity = 133/229 (58.08%), Postives = 165/229 (72.05%), Query Frame = 1 
Query:    4 ATPKNSKK-IPKKAAEGGKKRKASRTQSWGLYIYKVLKQVHPDTGASKRSMSIMNSFAGDVFERIASEAGRIARYTNKQTLSSHEVQTAVRLILPGELAKHSVSEGTKAITKYTAGTTGTKGGNSVRAGLQFPVGRICSMLKKGRYAKRVSAGAAVYLAAVLEYLCAEVLELGGNACRDLKKSRITPRHIKLAIAGDEELDKLARHVTIASGGVIPHIHKSLVPAKKGK 687
            A  K SKK + K A +GGKK++ +R +S+ +Y+YKVLKQVHPDTG S ++MSIMNSF  D+FERIASEA R+A Y  + T+SS E+QTAVRL+LPGELAKH+VSEGTKA+TKYT+                        +L+KG YA+RV AGA VYLAAVLEYL AE+LEL GNA RD KK+RI PRH++LA+  DEEL+KL   VTIA GGV+P+I   L+P K  K
Sbjct:   34 APKKGSKKAVTKTAGKGGKKKRRTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS----------------------KLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEK 240
[Close]
BLAST of jgi.p|Trimin1|157074 vs. uniprot
Match: A0A3B5KBG9_TAKRU (Uncharacterized protein n=2 Tax=Takifugu TaxID=31032 RepID=A0A3B5KBG9_TAKRU)

HSP 1 Score: 246 bits (629), Expect = 3.130e-79
Identity = 132/231 (57.14%), Postives = 166/231 (71.86%), Query Frame = 1 
Query:    4 ATPKNSKK-IPKKAAEGGKKRKASRTQSWGLYIYKVLKQVHPDTGASKRSMSIMNSFAGDVFERIASEAGRIARYTNKQTLSSHEVQTAVRLILPGELAKHSVSEGTKAITKYTAGTTGTKGGNSVRAGLQFPVGRICSMLKKGRYAKRVSAGAAVYLAAVLEYLCAEVLELGGNACRDLKKSRITPRHIKLAIAGDEELDKLARHVTIASGGVIPHIHKSLVPAKKGKTQ 693
            A  K SKK + K AA+GGKK++ +R +S+ +Y+YKVLKQVHPDTG S ++MSIMNSF  D+FERIASEA R+A Y  + T++S E+QTAVRL+LPGELAKH+VSEGTKA+TKYT+                        +L+KG Y +RV AGA VYLAAVLEYL AE+LEL GNA RD KK+RI PRH++LA+  DEEL+KL   VTIA GGV+P+I   L+P K  K +
Sbjct:   30 APKKGSKKAVTKTAAKGGKKKRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS----------------------KLLRKGNYGERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTEKAK 238
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157074 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z2K3_9STRA2.610e-158100.00Histone-fold-containing protein n=1 Tax=Tribonema ... [more]
A0A3L7HVC6_CRIGR1.590e-8261.95Histone H2A n=2 Tax=Amniota TaxID=32524 RepID=A0A3... [more]
A0A8J5ZYR3_GALPY1.280e-8158.47Histone H3.1 (Fragment) n=5 Tax=cellular organisms... [more]
A0A667Z0M6_9TELE1.570e-8058.08Uncharacterized protein n=3 Tax=Euacanthomorphacea... [more]
A0A2A6CKF1_PRIPA2.730e-8055.68Histone H4 n=4 Tax=Pristionchus pacificus TaxID=54... [more]
A0A672G2D8_SALFA1.570e-7958.52Uncharacterized protein n=3 Tax=Clupeocephala TaxI... [more]
A0A3Q1CD26_AMPOC2.330e-7958.08Uncharacterized protein n=4 Tax=Clupeocephala TaxI... [more]
A0A3Q1CCF9_AMPOC2.410e-7958.08Uncharacterized protein n=5 Tax=Percomorphaceae Ta... [more]
A0A3B5PQY2_XIPMA2.780e-7958.08Uncharacterized protein n=4 Tax=Poeciliinae TaxID=... [more]
A0A3B5KBG9_TAKRU3.130e-7957.14Uncharacterized protein n=2 Tax=Takifugu TaxID=310... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1202528..1203226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157074|e_gw1.2.313.1
BRITEko00000,ko00001,ko03036,ko04147
KEGG Pathwayko04217,ko05034,ko05203,ko05322,map04217,map05034,map05203,map05322
KEGG koko:K11251,ko:K11252,ko:K11254
GOsGO:0000003,GO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0002376,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005886,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006337,GO:0006338,GO:0006508,GO:0006807,GO:0006928,GO:0006950,GO:0006952,GO:0006954,GO:0006955,GO:0006996,GO:0006997,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0016477,GO:0016485,GO:0019538,GO:0019897,GO:0019898,GO:0019953,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0031497,GO:0031498,GO:0031638,GO:0031639,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032984,GO:0032986,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0035092,GO:0035093,GO:0040011,GO:0042393,GO:0043044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044085,GO:0044093,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044459,GO:0044464,GO:0044703,GO:0044815,GO:0045087,GO:0048232,GO:0048468,GO:0048515,GO:0048609,GO:0048856,GO:0048869,GO:0048870,GO:0050896,GO:0050900,GO:0051098,GO:0051099,GO:0051179,GO:0051276,GO:0051604,GO:0051674,GO:0051704,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0071103,GO:0071674,GO:0071704,GO:0071824,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564
Preferred nameHIST1H2BA
DescriptionHistone H2B
COG categoryB
Max annot lvl33208|Metazoa
EggNOG OGsCOG5262@1|root,KOG1744@1|root,KOG1744@2759|Eukaryota,KOG1756@2759|Eukaryota,3A1HW@33154|Opisthokonta,3BQEI@33208|Metazoa,3D7NQ@33213|Bilateria,48HAV@7711|Chordata,49E3Z@7742|Vertebrata,4A6I8@7898|Actinopterygii
Evalue6.66e-78
Seed ortholog7955.ENSDARP00000126712
Hectar predicted targeting categoryother localisation
TranscriptId157396
TrackFilteredModels1
ProteinId157074
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157074gene_718Tribonema minus UTEX_B_3156 geneContig_2 1202528..1203226 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_718_1exon_718_1Tribonema minus UTEX_B_3156 exonContig_2 1202528..1203226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_718CDS_718Tribonema minus UTEX_B_3156 CDSContig_2 1202528..1203226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157074Trimin1|157074|e_gw1.2.313.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1202528..1203226 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_718 ID=mRNA_718|Name=jgi.p|Trimin1|157074|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=699bp|location=Sequence derived from alignment at Contig_2:1202528..1203226+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACGCCGAAGAACTCAAAGAAGATCCCGAAGAAGGCGGCTGAAGG
GGGCAAGAAGCGCAAGGCGTCTCGCACGCAGAGCTGGGGCCTCTATATTT
ACAAGGTACTCAAGCAGGTGCACCCCGATACTGGCGCATCCAAGCGTAGC
ATGAGCATCATGAACTCTTTCGCCGGCGATGTGTTTGAGAGGATCGCATC
TGAAGCCGGTCGCATCGCAAGGTACACTAATAAGCAGACGCTTTCCTCGC
ACGAGGTGCAGACTGCGGTGAGGCTGATACTTCCTGGTGAGCTCGCAAAG
CACTCTGTGTCCGAGGGCACCAAGGCAATCACGAAGTACACAGCAGGAAC
CACGGGCACCAAGGGCGGCAACAGTGTGCGTGCCGGTCTGCAGTTCCCGG
TCGGCAGGATATGTAGCATGCTGAAGAAGGGCAGGTACGCCAAACGGGTC
AGTGCCGGGGCGGCAGTGTACCTGGCTGCTGTACTGGAGTACCTGTGCGC
CGAGGTCCTTGAGCTGGGTGGGAACGCGTGCAGAGACCTCAAGAAGAGCC
GCATCACACCCAGGCACATCAAGTTGGCCATTGCAGGTGATGAGGAGCTT
GACAAGCTAGCTAGGCACGTTACTATTGCATCGGGCGGCGTAATTCCGCA
CATTCACAAAAGTCTAGTGCCTGCCAAGAAGGGCAAGACCCAGGCTTAA
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protein sequence of jgi.p|Trimin1|157074

>Trimin1|157074|e_gw1.2.313.1 ID=Trimin1|157074|e_gw1.2.313.1|Name=jgi.p|Trimin1|157074|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=233bp
MATPKNSKKIPKKAAEGGKKRKASRTQSWGLYIYKVLKQVHPDTGASKRS
MSIMNSFAGDVFERIASEAGRIARYTNKQTLSSHEVQTAVRLILPGELAK
HSVSEGTKAITKYTAGTTGTKGGNSVRAGLQFPVGRICSMLKKGRYAKRV
SAGAAVYLAAVLEYLCAEVLELGGNACRDLKKSRITPRHIKLAIAGDEEL
DKLARHVTIASGGVIPHIHKSLVPAKKGKTQA*
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mRNA from alignment at Contig_2:1202528..1203226+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_718 ID=mRNA_718|Name=jgi.p|Trimin1|157074|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=699bp|location=Sequence derived from alignment at Contig_2:1202528..1203226+ (Tribonema minus UTEX_B_3156 )
ATGGCTACGCCGAAGAACTCAAAGAAGATCCCGAAGAAGGCGGCTGAAGG
GGGCAAGAAGCGCAAGGCGTCTCGCACGCAGAGCTGGGGCCTCTATATTT
ACAAGGTACTCAAGCAGGTGCACCCCGATACTGGCGCATCCAAGCGTAGC
ATGAGCATCATGAACTCTTTCGCCGGCGATGTGTTTGAGAGGATCGCATC
TGAAGCCGGTCGCATCGCAAGGTACACTAATAAGCAGACGCTTTCCTCGC
ACGAGGTGCAGACTGCGGTGAGGCTGATACTTCCTGGTGAGCTCGCAAAG
CACTCTGTGTCCGAGGGCACCAAGGCAATCACGAAGTACACAGCAGGAAC
CACGGGCACCAAGGGCGGCAACAGTGTGCGTGCCGGTCTGCAGTTCCCGG
TCGGCAGGATATGTAGCATGCTGAAGAAGGGCAGGTACGCCAAACGGGTC
AGTGCCGGGGCGGCAGTGTACCTGGCTGCTGTACTGGAGTACCTGTGCGC
CGAGGTCCTTGAGCTGGGTGGGAACGCGTGCAGAGACCTCAAGAAGAGCC
GCATCACACCCAGGCACATCAAGTTGGCCATTGCAGGTGATGAGGAGCTT
GACAAGCTAGCTAGGCACGTTACTATTGCATCGGGCGGCGTAATTCCGCA
CATTCACAAAAGTCTAGTGCCTGCCAAGAAGGGCAAGACCCAGGCTTAA
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Coding sequence (CDS) from alignment at Contig_2:1202528..1203226+

>mRNA_718 ID=mRNA_718|Name=jgi.p|Trimin1|157074|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=699bp|location=Sequence derived from alignment at Contig_2:1202528..1203226+ (Tribonema minus UTEX_B_3156 )
ATGGCTACGCCGAAGAACTCAAAGAAGATCCCGAAGAAGGCGGCTGAAGG
GGGCAAGAAGCGCAAGGCGTCTCGCACGCAGAGCTGGGGCCTCTATATTT
ACAAGGTACTCAAGCAGGTGCACCCCGATACTGGCGCATCCAAGCGTAGC
ATGAGCATCATGAACTCTTTCGCCGGCGATGTGTTTGAGAGGATCGCATC
TGAAGCCGGTCGCATCGCAAGGTACACTAATAAGCAGACGCTTTCCTCGC
ACGAGGTGCAGACTGCGGTGAGGCTGATACTTCCTGGTGAGCTCGCAAAG
CACTCTGTGTCCGAGGGCACCAAGGCAATCACGAAGTACACAGCAGGAAC
CACGGGCACCAAGGGCGGCAACAGTGTGCGTGCCGGTCTGCAGTTCCCGG
TCGGCAGGATATGTAGCATGCTGAAGAAGGGCAGGTACGCCAAACGGGTC
AGTGCCGGGGCGGCAGTGTACCTGGCTGCTGTACTGGAGTACCTGTGCGC
CGAGGTCCTTGAGCTGGGTGGGAACGCGTGCAGAGACCTCAAGAAGAGCC
GCATCACACCCAGGCACATCAAGTTGGCCATTGCAGGTGATGAGGAGCTT
GACAAGCTAGCTAGGCACGTTACTATTGCATCGGGCGGCGTAATTCCGCA
CATTCACAAAAGTCTAGTGCCTGCCAAGAAGGGCAAGACCCAGGCTTAA
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