mRNA_7152 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152612
Unique NamemRNA_7152
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|152612 vs. uniprot
Match: A0A835Z8Z0_9STRA (Guanylate cyclase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Z0_9STRA)

HSP 1 Score: 394 bits (1012), Expect = 1.600e-138
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 1
Query:    1 FDCALLFVDISGFTSSMERFATQGSRGTERFWRAISGYFGSLLREIYSRGGDVECFAGDAMMVSFGAEEVASHPIGALILARHLALHGDVQSEADARLAVATKVAVDAAAAMLRTMSPYTRVERDFPGPGQDMQLLLTLHGSVGAGGLTALELIHADTGETARGKRWHYVCGPVIGQLARAHAISAANDCVLSKQAARAAGADA 612
            FDCALLFVDISGFTSSMERFATQGSRGTERFWRAISGYFGSLLREIYSRGGDVECFAGDAMMVSFGAEEVASHPIGALILARHLALHGDVQSEADARLAVATKVAVDAAAAMLRTMSPYTRVERDFPGPGQDMQLLLTLHGSVGAGGLTALELIHADTGETARGKRWHYVCGPVIGQLARAHAISAANDCVLSKQAARAAGADA
Sbjct:    1 FDCALLFVDISGFTSSMERFATQGSRGTERFWRAISGYFGSLLREIYSRGGDVECFAGDAMMVSFGAEEVASHPIGALILARHLALHGDVQSEADARLAVATKVAVDAAAAMLRTMSPYTRVERDFPGPGQDMQLLLTLHGSVGAGGLTALELIHADTGETARGKRWHYVCGPVIGQLARAHAISAANDCVLSKQAARAAGADA 204          
BLAST of jgi.p|Trimin1|152612 vs. uniprot
Match: D8LQF9_ECTSI (Guanylyl cyclase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQF9_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 2.770e-25
Identity = 76/203 (37.44%), Postives = 108/203 (53.20%), Query Frame = 1
Query:    4 DCALLFVDISGFTSSMERFATQGSRGTERFWRAISGYFGSLLREIYSRGGDVECFAGDAMMVSFGAEEVASHPIGALILARHLALHGDVQSEADARLAVATKVAVDAAAAMLRTMSPYTRVERDFPGPGQDMQLLLTLHGSVGAGGLTALELIHADTGETARGKRWHYVCGPVIGQLARAHAISAANDCVLSKQAARAAGADA 612
            D ALLFVDISG+T+SME FA QG++G E+FW+  + YF  LL  I   GGD++CFAGDA+++ +  E +     G  +      L G   +    +L +AT  A      +L  +SPY   +    G  +     LTLHGS+G G L  + +    T   A      +VCG V  QLA AH +S  N+  LS +A+ +A  +A
Sbjct:    2 DAALLFVDISGYTASMEMFAQQGAQGIEKFWKMFNAYFCDLLDIIQGTGGDIDCFAGDAILIVYETERIWKRT-GESVRKCINTLDGTQPT----KLCLATMAAAQCGGRLLNKLSPYNFSD----GVNEST---LTLHGSIGVGSLRTVNI--GGTTAQAGSSFATFVCGGVFEQLAIAHDLSRKNEVCLSGEASTSAAEEA 190          
BLAST of jgi.p|Trimin1|152612 vs. uniprot
Match: A0A835YYD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYD2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.700e-17
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 1
Query:   25 DISGFTSSMERFATQGSRGTERFWRAISGYFGSLLREIYSRGGDVECFAGDAMMVSFGAEEVASHPI 225
            D+SGFT+ MERFA+ G  G E+FW  I+GYF  LL  I   GGDVECFAGDA+MV + A+ +A   +
Sbjct:    2 DVSGFTACMERFASHGPAGIEKFWTIINGYFNELLSYIRGTGGDVECFAGDALMVVYDAKGIARRQV 68          
BLAST of jgi.p|Trimin1|152612 vs. uniprot
Match: A0A061QVT6_9CHLO (Guanylyl cyclase n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QVT6_9CHLO)

HSP 1 Score: 65.1 bits (157), Expect = 8.640e-9
Identity = 55/193 (28.50%), Postives = 97/193 (50.26%), Query Frame = 1
Query:   16 LFVDISGFTSSMERFATQGSRGTERFWRAISGYFGSLLREIYSRGGDVECFAGDAMMVSFGAEEVASHP--IGALILARHLALHGDVQSEADARLAVATKVAVDAAAAMLRTMSPYTRVERDFPGPGQDMQLLLTLHGSVGAGGLTALELIHADTGETARGKRWHYVCGPVIGQLARAHAISAANDCVLSKQA 588
            L +D+SGFT+  E+F+  G++  E F   +SG+F      I+S GGD++CFAGDA+++ F +  +A H   +  L+L R         S  ++ L      A+  A A+ R ++ Y         PG      LT+H ++  G + ++E       +  RG+   +V G  + +L +A  +S +++ VL+  A
Sbjct:   68 LLLDVSGFTALSEKFSEGGTKSFEEFSLLLSGFFARTCEIIFSYGGDIDCFAGDALLILFPST-IAVHKKRLDKLLLPRDSRNSSGGASVLNSNLIEPATRALQCAFAVSRELNEYE------VSPGLPR---LTIHAAMACGDIYSVE---CGGSQARRGEA--FVLGRPLCELRKAVDLSRSSEIVLTAMA 245          
BLAST of jgi.p|Trimin1|152612 vs. uniprot
Match: A0A7S4HKQ7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HKQ7_9EUKA)

HSP 1 Score: 63.2 bits (152), Expect = 9.110e-9
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    1 FDCALLFVDISGFTSSMERFATQGSRGTERFWRAISGYFGSLLREIYSRGGDVECFAGDAMMVSFGAEEVAS 216
            F  A+LF+DISGFTS  ER A  G+ G E   + I+ YF SL++ +   GGDV  FAGDA++  +  E   S
Sbjct:    5 FPAAILFLDISGFTSLNERLAQLGAAGPELVSKHINSYFASLIKAVSEHGGDVLKFAGDALICMWAGETPGS 76          
BLAST of jgi.p|Trimin1|152612 vs. uniprot
Match: A0A061R492_9CHLO (Guanylate cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R492_9CHLO)

HSP 1 Score: 65.1 bits (157), Expect = 9.420e-9
Identity = 55/193 (28.50%), Postives = 97/193 (50.26%), Query Frame = 1
Query:   16 LFVDISGFTSSMERFATQGSRGTERFWRAISGYFGSLLREIYSRGGDVECFAGDAMMVSFGAEEVASHP--IGALILARHLALHGDVQSEADARLAVATKVAVDAAAAMLRTMSPYTRVERDFPGPGQDMQLLLTLHGSVGAGGLTALELIHADTGETARGKRWHYVCGPVIGQLARAHAISAANDCVLSKQA 588
            L +D+SGFT+  E+F+  G++  E F   +SG+F      I+S GGD++CFAGDA+++ F +  +A H   +  L+L R         S  ++ L      A+  A A+ R ++ Y         PG      LT+H ++  G + ++E       +  RG+   +V G  + +L +A  +S +++ VL+  A
Sbjct:   68 LLLDVSGFTALSEKFSEGGTKSFEEFSLLLSGFFARTCEIIFSYGGDIDCFAGDALLILFPST-IAVHKKRLDKLLLPRDSRNSSGGASVLNSNLIEPATRALQCAFAVSRELNEYE------VSPGLPR---LTIHAAMACGDIYSVE---CGGSQARRGEA--FVLGRPLCELRKAVDLSRSSEIVLTAMA 245          
BLAST of jgi.p|Trimin1|152612 vs. uniprot
Match: A0A090AHP6_9GAMM (Adenylate/guanylate cyclase n=1 Tax=Thioploca ingrica TaxID=40754 RepID=A0A090AHP6_9GAMM)

HSP 1 Score: 64.7 bits (156), Expect = 1.250e-8
Identity = 49/150 (32.67%), Postives = 75/150 (50.00%), Query Frame = 1
Query:   10 ALLFVDISGFTSSMERFATQGSRGTERFWRAISGYFGSLLREIYSRGGDVECFAGDAMMVSFGAEEVASHPIGALILARHLALHGDVQSEADARLAVATKVAVDAAAAMLRTMSPYTRVERDFPGPGQDMQLLLTLHGSVGAGGLTALEL 459
            A+LF D+SGFT+  E  A QG+ G E+  + I+ YF  L+  I++ GGDV  FAGDA++  +   E  S  +   +++   +   D  SE   +L + T  A     A+  T+  Y              Q+ L+LH S+GAG +  L L
Sbjct:   44 AVLFADMSGFTTLAETLAEQGAAGAEQLTQIINNYFSQLIGVIHAHGGDVVKFAGDALVALWLTAEETS--LKNSLISSWQSPQEDSHSE---QLTLVTHRAAQCGLAIQETLKDYHIYN----------QMTLSLHVSIGAGEIALLHL 178          
BLAST of jgi.p|Trimin1|152612 vs. uniprot
Match: A0A194RKT8_PAPMA (Adenylate cyclase type 10 n=4 Tax=Papilio TaxID=7145 RepID=A0A194RKT8_PAPMA)

HSP 1 Score: 63.5 bits (153), Expect = 3.160e-8
Identity = 37/106 (34.91%), Postives = 56/106 (52.83%), Query Frame = 1
Query:   13 LLFVDISGFTSSMERFATQGSRGTERFWRAISGYFGSLLREIYSRGGDVECFAGDAMMVSFGAEEVA--SHPIGALILARHLALHGDVQSEADARLAVATKVAVDA 324
            LL  D+SG+T+  ER+   G  GT R    ++ Y GSL+  IYS GGD+  FAGDA +  +  ++ +  SH I   I    +  H     E D ++ +  K+A+ A
Sbjct:   85 LLMADVSGYTALSERYTNSGKGGTYRLTVTLNTYLGSLIEVIYSHGGDIIKFAGDAFLALWKTDKRSYLSHTIHTAIACALIIQHSFGSYETDVKVNLKVKLAISA 190          
BLAST of jgi.p|Trimin1|152612 vs. uniprot
Match: UPI0006784BA7 (adenylate cyclase type 10-like isoform X2 n=2 Tax=Papilio TaxID=7145 RepID=UPI0006784BA7)

HSP 1 Score: 62.4 bits (150), Expect = 6.950e-8
Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = 1
Query:   13 LLFVDISGFTSSMERFATQGSRGTERFWRAISGYFGSLLREIYSRGGDVECFAGDAMMVSFGAEEVA--SHPIGALILARHLALHGDVQSEADARLAVATKVAVDA 324
            LL  D+SG+T+  ER+   G  GT R    ++ Y GSL+  IYS GGD+  FAGDA +  +  ++ +  +H I   I    +  H     E D ++ +  K+A+ A
Sbjct:  115 LLMADVSGYTALSERYTNSGKGGTYRLTVTLNTYLGSLIEVIYSHGGDIIKFAGDAFLALWKTDKRSYLNHTIHTAIACALIIQHSFGSYETDVKVNLKVKLAISA 220          
BLAST of jgi.p|Trimin1|152612 vs. uniprot
Match: A0A7S1T3H1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T3H1_9CHLO)

HSP 1 Score: 60.8 bits (146), Expect = 7.110e-8
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   10 ALLFVDISGFTSSMERFATQ-GSRGTERFWRAISGYFGSLLREIYSRGGDVECFAGDAMMVSF 195
            ALL VD+SGFT+  E    + GS G ERF  A+S +FG ++  I S  GDV+CFAGDA++V F
Sbjct:   76 ALLIVDVSGFTALSEDAKRRLGSEGVERFSLAMSAFFGVMMDTIASCHGDVDCFAGDAVLVVF 138          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152612 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8Z0_9STRA1.600e-138100.00Guanylate cyclase domain-containing protein (Fragm... [more]
D8LQF9_ECTSI2.770e-2537.44Guanylyl cyclase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A835YYD2_9STRA4.700e-1755.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A061QVT6_9CHLO8.640e-928.50Guanylyl cyclase n=2 Tax=Tetraselmis sp. GSL018 Ta... [more]
A0A7S4HKQ7_9EUKA9.110e-945.83Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A061R492_9CHLO9.420e-928.50Guanylate cyclase n=1 Tax=Tetraselmis sp. GSL018 T... [more]
A0A090AHP6_9GAMM1.250e-832.67Adenylate/guanylate cyclase n=1 Tax=Thioploca ingr... [more]
A0A194RKT8_PAPMA3.160e-834.91Adenylate cyclase type 10 n=4 Tax=Papilio TaxID=71... [more]
UPI0006784BA76.950e-833.96adenylate cyclase type 10-like isoform X2 n=2 Tax=... [more]
A0A7S1T3H1_9CHLO7.110e-852.38Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_21contigContig_21:381413..382024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152612|gw1.21.174.1
DescriptionAdenylyl- / guanylyl cyclase, catalytic domain
COG categoryT
Max annot lvl28221|Deltaproteobacteria
EggNOG OGsCOG0457@1|root,COG2114@1|root,COG3899@1|root,COG0457@2|Bacteria,COG2114@2|Bacteria,COG3899@2|Bacteria,1R8BD@1224|Proteobacteria,43AIE@68525|delta/epsilon subdivisions,2X5YP@28221|Deltaproteobacteria
Evalue2.56e-12
Seed ortholog1242864.D187_005533
Hectar predicted targeting categoryother localisation
TranscriptId152934
TrackFilteredModels1
ProteinId152612
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152612gene_7152Tribonema minus UTEX_B_3156 geneContig_21 381413..382024 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7152_1exon_7152_1Tribonema minus UTEX_B_3156 exonContig_21 381413..382024 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7152CDS_7152Tribonema minus UTEX_B_3156 CDSContig_21 381413..382024 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152612Trimin1|152612|gw1.21.174.1Tribonema minus UTEX_B_3156 polypeptideContig_21 381413..382024 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7152 ID=mRNA_7152|Name=jgi.p|Trimin1|152612|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=612bp|location=Sequence derived from alignment at Contig_21:381413..382024+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTTGACTGCGCGCTCCTCTTCGTGGACATCAGCGGGTTCACGAGCAGCAT
GGAGCGGTTCGCGACGCAGGGCAGCCGCGGCACGGAGCGCTTCTGGCGCG
CCATCAGCGGCTACTTTGGCTCGCTGCTGCGCGAGATCTACTCGCGCGGC
GGCGACGTCGAGTGCTTCGCGGGCGACGCCATGATGGTGTCCTTCGGCGC
GGAGGAGGTCGCCTCGCACCCGATAGGGGCGCTCATCCTCGCGCGCCACC
TCGCGCTGCACGGCGACGTGCAGAGCGAGGCTGACGCGCGCCTCGCTGTA
GCGACAAAGGTCGCCGTCGACGCCGCCGCCGCCATGCTGCGCACCATGTC
GCCGTACACGCGCGTCGAGCGCGACTTCCCGGGCCCCGGCCAGGACATGC
AGCTGCTGCTCACGCTGCACGGCTCCGTCGGCGCCGGCGGCCTCACGGCG
CTCGAGCTCATCCACGCCGACACGGGCGAGACGGCGCGCGGCAAGCGCTG
GCACTACGTGTGCGGCCCCGTCATCGGCCAGCTCGCGCGCGCGCACGCCA
TCTCCGCCGCTAACGACTGCGTGCTCAGCAAGCAGGCGGCACGCGCCGCC
GGCGCCGACGCG
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protein sequence of jgi.p|Trimin1|152612

>Trimin1|152612|gw1.21.174.1 ID=Trimin1|152612|gw1.21.174.1|Name=jgi.p|Trimin1|152612|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=204bp
FDCALLFVDISGFTSSMERFATQGSRGTERFWRAISGYFGSLLREIYSRG
GDVECFAGDAMMVSFGAEEVASHPIGALILARHLALHGDVQSEADARLAV
ATKVAVDAAAAMLRTMSPYTRVERDFPGPGQDMQLLLTLHGSVGAGGLTA
LELIHADTGETARGKRWHYVCGPVIGQLARAHAISAANDCVLSKQAARAA
GADA
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mRNA from alignment at Contig_21:381413..382024+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7152 ID=mRNA_7152|Name=jgi.p|Trimin1|152612|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=612bp|location=Sequence derived from alignment at Contig_21:381413..382024+ (Tribonema minus UTEX_B_3156 )
TTTGACTGCGCGCTCCTCTTCGTGGACATCAGCGGGTTCACGAGCAGCAT GGAGCGGTTCGCGACGCAGGGCAGCCGCGGCACGGAGCGCTTCTGGCGCG CCATCAGCGGCTACTTTGGCTCGCTGCTGCGCGAGATCTACTCGCGCGGC GGCGACGTCGAGTGCTTCGCGGGCGACGCCATGATGGTGTCCTTCGGCGC GGAGGAGGTCGCCTCGCACCCGATAGGGGCGCTCATCCTCGCGCGCCACC TCGCGCTGCACGGCGACGTGCAGAGCGAGGCTGACGCGCGCCTCGCTGTA GCGACAAAGGTCGCCGTCGACGCCGCCGCCGCCATGCTGCGCACCATGTC GCCGTACACGCGCGTCGAGCGCGACTTCCCGGGCCCCGGCCAGGACATGC AGCTGCTGCTCACGCTGCACGGCTCCGTCGGCGCCGGCGGCCTCACGGCG CTCGAGCTCATCCACGCCGACACGGGCGAGACGGCGCGCGGCAAGCGCTG GCACTACGTGTGCGGCCCCGTCATCGGCCAGCTCGCGCGCGCGCACGCCA TCTCCGCCGCTAACGACTGCGTGCTCAGCAAGCAGGCGGCACGCGCCGCC GGCGCCGACGCG
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Coding sequence (CDS) from alignment at Contig_21:381413..382024+

>mRNA_7152 ID=mRNA_7152|Name=jgi.p|Trimin1|152612|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=612bp|location=Sequence derived from alignment at Contig_21:381413..382024+ (Tribonema minus UTEX_B_3156 )
TTTGACTGCGCGCTCCTCTTCGTGGACATCAGCGGGTTCACGAGCAGCAT
GGAGCGGTTCGCGACGCAGGGCAGCCGCGGCACGGAGCGCTTCTGGCGCG
CCATCAGCGGCTACTTTGGCTCGCTGCTGCGCGAGATCTACTCGCGCGGC
GGCGACGTCGAGTGCTTCGCGGGCGACGCCATGATGGTGTCCTTCGGCGC
GGAGGAGGTCGCCTCGCACCCGATAGGGGCGCTCATCCTCGCGCGCCACC
TCGCGCTGCACGGCGACGTGCAGAGCGAGGCTGACGCGCGCCTCGCTGTA
GCGACAAAGGTCGCCGTCGACGCCGCCGCCGCCATGCTGCGCACCATGTC
GCCGTACACGCGCGTCGAGCGCGACTTCCCGGGCCCCGGCCAGGACATGC
AGCTGCTGCTCACGCTGCACGGCTCCGTCGGCGCCGGCGGCCTCACGGCG
CTCGAGCTCATCCACGCCGACACGGGCGAGACGGCGCGCGGCAAGCGCTG
GCACTACGTGTGCGGCCCCGTCATCGGCCAGCTCGCGCGCGCGCACGCCA
TCTCCGCCGCTAACGACTGCGTGCTCAGCAAGCAGGCGGCACGCGCCGCC
GGCGCCGACGCG
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