mRNA_7138 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348219
Unique NamemRNA_7138
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348219 vs. uniprot
Match: A0A835Z600_9STRA (Heme oxygenase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z600_9STRA)

HSP 1 Score: 442 bits (1138), Expect = 3.200e-156
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 3
Query:  159 MSKADPNSFVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVGANDALAALRDTGLERTAALEKDIAWMLETYPELATPPVSDNAAAYCAFLKDIAAKSVPGFVCHFYNHYFAHTAGGIMIGKKVADLCLGGQKLAFYQWASDVRALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLLGSITGA 809
            MSKADPNSFVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVGANDALAALRDTGLERTAALEKDIAWMLETYPELATPPVSDNAAAYCAFLKDIAAKSVPGFVCHFYNHYFAHTAGGIMIGKKVADLCLGGQKLAFYQWASDVRALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLLGSITGA
Sbjct:    1 MSKADPNSFVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVGANDALAALRDTGLERTAALEKDIAWMLETYPELATPPVSDNAAAYCAFLKDIAAKSVPGFVCHFYNHYFAHTAGGIMIGKKVADLCLGGQKLAFYQWASDVRALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLLGSITGA 217          
BLAST of jgi.p|Trimin1|348219 vs. uniprot
Match: A0A6H5KUU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU7_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 2.500e-90
Identity = 137/227 (60.35%), Postives = 164/227 (72.25%), Query Frame = 3
Query:  153 GAMSKADPNSFVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVGANDALAALRDTGLERTAALEKDIAWMLETYPEL---------ATPPVSDNAAAYCAFLKDIAAKSVPGFVCHFYNHYFAHTAGGIMIGKKVADLCLGGQKLAFYQW-ASDVRALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLLGSIT 803
            G   K D NSFVQ +MR  AMKLHTRDQ+P+EG+QE  G  F++W P+R GYLQFLVDS+ VY   +E  G++  LA  R+TGLERT AL KDIAWMLETY +            P  ++NA  Y +FL++  A S+P F+CH+YNHYFAHTAGG MIG+KVA+ CL G+ L FYQW A DV+ LLD VRV IDAMA GWS EEK+ C+ ETARTFKYGGSLL SIT
Sbjct:   96 GVKPKTDKNSFVQWDMRRAAMKLHTRDQSPKEGKQENKGTPFSDWKPSRRGYLQFLVDSKVVYEALEEACGSDPRLAEFRNTGLERTEALTKDIAWMLETYSDSWAEGGGGDGKAPSPTENALEYASFLREKVASSLPAFMCHYYNHYFAHTAGGRMIGRKVAESCLDGRTLEFYQWGADDVKVLLDGVRVKIDAMAKGWSEEEKEACVSETARTFKYGGSLLSSIT 322          
BLAST of jgi.p|Trimin1|348219 vs. uniprot
Match: D7FK52_ECTSI (Heme oxygenase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK52_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 1.820e-79
Identity = 130/244 (53.28%), Postives = 159/244 (65.16%), Query Frame = 3
Query:  153 GAMSKADPNSFVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVGANDALAALRDTGLERTAALEKDIAWMLETYPEL---------ATPPVSDNAAAYCAFLKDIAAKSVPGFVCHFYNHYFAHTAGGIMIGKKVA------------------DLCLGGQKLAFYQWASD-VRALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLLGSI 800
            G   K D NSFVQ +MR  AMKLHTRDQ+P+EG+QE  G KF++W P+R GYLQFLVDS+ VY   +E  G++  LA  R+TGLERT AL KDIAWMLE YP+            P  ++NA  Y +FL++  A ++PGF+CH+YNHYFAHTAGG MIG+KVA                  D CL G+ L FYQW SD V+ LLD VRV IDAMA GWS EEK+ C+ ETARTF      +G +
Sbjct:   96 GVKPKTDKNSFVQWDMRRAAMKLHTRDQSPKEGKQENKGTKFSDWKPSRRGYLQFLVDSKVVYEALEEACGSDPRLAEFRNTGLERTEALTKDIAWMLEAYPDSWAEGGGGDGKAPSPTENALEYASFLREKVASTLPGFMCHYYNHYFAHTAGGRMIGRKVAESALGVFFKHVSAFPFRSDSCLDGRTLEFYQWGSDDVKVLLDGVRVKIDAMAKGWSEEEKEACVSETARTFNLRVFFVGRM 339          
BLAST of jgi.p|Trimin1|348219 vs. uniprot
Match: A0A8J5XQF0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XQF0_DIALT)

HSP 1 Score: 222 bits (566), Expect = 2.530e-69
Identity = 115/213 (53.99%), Postives = 144/213 (67.61%), Query Frame = 3
Query:  162 SKADPNSFVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVGANDALAALRDTGLERTAALEKDIAWMLETYPELATPPVSDNAAAYCAFLKDIAAKSVPGFVCHFYNHYFAHTAGGIMIGKKVADLCLGGQKLAFYQWASDVRALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLLGSI 800
            S      FVQ EMR  AM LHTRDQA +EGQQ+   K  A+W PTR GYLQFLVDSR VY   +E+VG    LA L++TGLERT AL+KDIAW L           ++ A  Y A LK +   S P F+CHFYN+YFAHTAGG MIGK+++D+ L G+ L FY+W  DV+ LLDA R +IDAMA  W+++E+D CL +TA +FK GG L+ S+
Sbjct:    4 STTQATGFVQTEMRKAAMALHTRDQA-KEGQQQAQ-KPLAKWEPTRKGYLQFLVDSRHVYGAVEEIVGERAELATLKNTGLERTVALDKDIAWFLSDEGGCQPTTPTEAATGYAAELKRL---STPAFICHFYNYYFAHTAGGRMIGKQMSDMLLDGRVLEFYKWDGDVKELLDAARQHIDAMAASWTQDERDACLAQTAASFKGGGGLMASL 211          
BLAST of jgi.p|Trimin1|348219 vs. uniprot
Match: A0A6V1QVP2_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QVP2_HETAK)

HSP 1 Score: 223 bits (568), Expect = 4.990e-69
Identity = 108/209 (51.67%), Postives = 147/209 (70.33%), Query Frame = 3
Query:  180 SFVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVGANDALAALRDTGLERTAALEKDIAWMLETYPELATPPVSDNAAAYCAFLKDIAAKSVPGFVCHFYNHYFAHTAGGIMIGKKVADLCLGGQKLAFYQWASDVRALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLLGSITG 806
            SFVQ +MR  AMKLHT+DQA REG+Q+   K  ++W+P    YLQFLVDSR VY T +++  +   L   ++TGLERTAAL++DIAWM E +  +  P  S     Y   L+++  +S+PGFVCH+YNHYFAHTAGG+MIG+K+++  L G  L FY+WA DV+ +  AV  +IDA+AD WS  +K ECL+ET  TF+YGG+LL  ++G
Sbjct:   47 SFVQNDMRAYAMKLHTKDQA-REGEQKAQ-KPVSKWSPEPINYLQFLVDSRLVYQTMEDICNSTPGLEKFQNTGLERTAALDQDIAWMSEKF-SVDVPAASPLGQGYADVLREVVGRSLPGFVCHYYNHYFAHTAGGLMIGRKISEALLEGATLEFYKWAGDVKEMGMAVIRDIDALADTWSDAQKQECLEETGNTFRYGGALLSHLSG 252          
BLAST of jgi.p|Trimin1|348219 vs. uniprot
Match: I0YPD9_COCSC (Heme oxygenase-like protein n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YPD9_COCSC)

HSP 1 Score: 218 bits (554), Expect = 1.880e-67
Identity = 112/211 (53.08%), Postives = 146/211 (69.19%), Query Frame = 3
Query:  183 FVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVGAND--ALAALRDTGLERTAALEKDIAWMLETYPELATPPVSDNAA--AYCAFLKDIAAKSVPGFVCHFYNHYFAHTAGGIMIGKKVADLCLGGQKLAFYQWASDVRALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLLGSIT 803
            FV+ EMR VAMKLHTRDQAP+EGQQE   K +  W PTR GYL+FL +S+ VY T + +V        A  ++TGLER+A L +DIAWM + Y  LA   +S++    AY + LK++A    P F+CHFYN YFAHTAGG MIG KVA + L  ++L FY++  D RA LD VR  ++A+A+GW+REEKD CL+ET ++FKY G LL +IT
Sbjct:    7 FVE-EMRFVAMKLHTRDQAPKEGQQESAEKAWKAWEPTRVGYLRFLAESKEVYETLENIVAEASFPEYARFQNTGLERSAGLSEDIAWMQQEY-SLAPVQLSEDGPGRAYSSLLKELARDCPPKFLCHFYNVYFAHTAGGRMIGTKVASMILDSRELQFYKYEGDFRAKLDEVRAQLNAVAEGWTREEKDSCLEETQKSFKYSGGLLRTIT 215          
BLAST of jgi.p|Trimin1|348219 vs. uniprot
Match: A0A0M0JY97_9EUKA (Heme oxygenase 1 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JY97_9EUKA)

HSP 1 Score: 219 bits (558), Expect = 2.010e-67
Identity = 121/226 (53.54%), Postives = 149/226 (65.93%), Query Frame = 3
Query:  141 RGGHG-AMSKA--DPNSFVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVGANDALAALRDTGLERTAALEKDIAWMLETYPELATPPVSDNAAAYCAFLKDIAAKS-VPGFVCHFYNHYFAHTAGGIMIGKKVADLCLGGQKLAFYQWASDV-RALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLLGSIT 803
            R  HG AM+ A  +  SFVQ EMRG AM LHTRDQAPREG+Q    +  + W PTRA YLQFLVDSR VY T +E+V   +  A+ R +GLER AAL+KDIAW   T+ E   P V      Y A L+ + A   +  FVCHFYN YFAHTAGG MIGK++A + L G  L FYQW  DV + LL  +R  IDA+  GWSRE+KD+CL ETA +FK GG+++  I+
Sbjct:   36 RAAHGLAMTAATGEVPSFVQTEMRGAAMALHTRDQAPREGKQPAQ-RPMSSWQPTRADYLQFLVDSRKVYRTLEEIVEETEMFASFRASGLERGAALDKDIAWFAATHGEK-EPAVKSQGETYAAELRKMVADGELERFVCHFYNFYFAHTAGGRMIGKRMAGMLLDGHTLEFYQWDGDVDQVLLPGLRTKIDALVAGWSREQKDKCLAETANSFKGGGAMMQHIS 259          
BLAST of jgi.p|Trimin1|348219 vs. uniprot
Match: A0A2K3D9D4_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3D9D4_CHLRE)

HSP 1 Score: 217 bits (553), Expect = 1.140e-66
Identity = 109/207 (52.66%), Postives = 144/207 (69.57%), Query Frame = 3
Query:  195 EMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVGANDALAALRDTGLERTAALEKDIAWMLETYPELATPPVSDNAAA--YCAFLKDIAAKSVPGFVCHFYNHYFAHTAGGIMIGKKVADLCLGGQKLAFYQWASDVRALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLLGSITGA 809
            EMR VAMKLHT+DQAP+EG++E    K   W PTR GYL+FLV+S+ V+ TF+ +V ++DA  ALR+TGLER   L  DIAWM +++ +LA P +  + AA  Y AFL+ +A    P F+CH+YN YFAHTAGG MIG KV+ + L GQ L FY+W  DV   L+ VR +I+ MA+GW+  EK+ CL ET  +FKY G +L +IT A
Sbjct:   60 EMRKVAMKLHTKDQAPKEGEKE--APKQGPWTPTRPGYLRFLVESKEVFDTFERLVNSSDAYKALRNTGLERGPGLAADIAWMEQSF-QLAPPDMKPDGAAATYVAFLEKLAKTDPPAFICHYYNFYFAHTAGGRMIGNKVSSMLLDGQTLEFYKWQGDVNEHLEGVRKSINVMAEGWTPAEKEHCLAETESSFKYSGQILRAITEA 263          
BLAST of jgi.p|Trimin1|348219 vs. uniprot
Match: A0A0D2MSL3_9CHLO (Heme oxygenase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MSL3_9CHLO)

HSP 1 Score: 216 bits (550), Expect = 3.240e-66
Identity = 110/228 (48.25%), Postives = 148/228 (64.91%), Query Frame = 3
Query:  150 HGAMSKAD--PNSFVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVGANDA--LAALRDTGLERTAALEKDIAWMLETY----PELATPPVSDNAAAYCAFLKDIAAKSVPGFVCHFYNHYFAHTAGGIMIGKKVADLCLGGQKLAFYQWASDVRALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLLGSITGA 809
            HGA+S  +     F+ GEMR VAMKLHTRDQAP+EG Q+ + +    W PTR GY++FL +SRAVYS F++++   +       + TGLER AA++KD+AW  ETY    P+L   P      AY      +A    P F+CH+YN++FAHTAGG MIG KV+ + L   +L FY++  DV  LLDAVR  I+A+++ W+RE+KD CL ETA TFKY GSL+  I G+
Sbjct:   37 HGAVSATELKKQGFI-GEMRAVAMKLHTRDQAPKEGGQKASPRPMPTWQPTREGYVRFLAESRAVYSAFEDIISKAERPEYEQFQGTGLERVAAIDKDLAWFQETYGISAPQL---PADSPGLAYAXXXXGLAVSDPPAFICHYYNYFFAHTAGGRMIGSKVSSMILDNAELEFYKYDGDVAPLLDAVRSKINALSESWTREQKDHCLQETADTFKYSGSLMPFIMGS 260          
BLAST of jgi.p|Trimin1|348219 vs. uniprot
Match: A0A7R9TEH2_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TEH2_9VIRI)

HSP 1 Score: 213 bits (543), Expect = 1.310e-65
Identity = 107/217 (49.31%), Postives = 141/217 (64.98%), Query Frame = 3
Query:  150 HGAMSKADPNSFVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVG---ANDALAALRDTGLERTAALEKDIAWMLETYPELATPPVSDNAAAYCAFLKDIAAKSVPGFVCHFYNHYFAHTAGGIMIGKKVADLCLGGQKLAFYQWASDVRALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLL 791
            HG M          GEMR  AMKLHT++QAP+EGQ EE  K  ++W PTR  Y Q+LVDS+ VY   +EVV    A+  LA  + TGLER  AL KD+ +    Y  +  P  ++  + Y AFL++ AA  VPGF+CH+YN YFAHTAGG  IGK ++D+ L G+KL FY W   ++  +D VR +I++MA+GWS EEK  CL+ETA +FKY G+LL
Sbjct:   11 HGRMGAPKKEDGFLGEMRAYAMKLHTKEQAPKEGQAEEPSKPMSKWEPTRELYAQYLVDSKVVYDALEEVVASAPADSPLAVFQSTGLERGPALAKDLEFFESEYG-IKAPEPTEAGSGYAAFLREKAASDVPGFMCHYYNVYFAHTAGGRQIGKMLSDMVLDGKKLEFYSWEGVLKDHMDGVRGSINSMAEGWSEEEKTACLEETAPSFKYAGTLL 226          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348219 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z600_9STRA3.200e-156100.00Heme oxygenase-like protein n=1 Tax=Tribonema minu... [more]
A0A6H5KUU7_9PHAE2.500e-9060.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK52_ECTSI1.820e-7953.28Heme oxygenase 1 n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A8J5XQF0_DIALT2.530e-6953.99Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A6V1QVP2_HETAK4.990e-6951.67Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
I0YPD9_COCSC1.880e-6753.08Heme oxygenase-like protein n=2 Tax=Coccomyxa TaxI... [more]
A0A0M0JY97_9EUKA2.010e-6753.54Heme oxygenase 1 n=1 Tax=Chrysochromulina tobinii ... [more]
A0A2K3D9D4_CHLRE1.140e-6652.66Uncharacterized protein n=2 Tax=Chlamydomonas TaxI... [more]
A0A0D2MSL3_9CHLO3.240e-6648.25Heme oxygenase n=1 Tax=Monoraphidium neglectum Tax... [more]
A0A7R9TEH2_9VIRI1.310e-6549.31Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_21contigContig_21:172216..173286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348219|estExt_Genemark1.C_Ctg_210020
BRITEko00000,ko00001,ko01000
KEGG rclassRC01270
KEGG ReactionR11579
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG koko:K21480
EC1.14.15.20
Preferred nameHY1
Descriptionheme oxidation
COG categoryP
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5398@1|root,KOG4480@2759|Eukaryota
Evalue8.9e-81
Seed ortholog2880.D7FK52
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionheme oxygenase 1
Ec32 orthologEc-04_005790.1
TranscriptId348541
TrackFilteredModels1
ProteinId348219
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348219gene_7138Tribonema minus UTEX_B_3156 geneContig_21 172216..173286 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7138_2exon_7138_2Tribonema minus UTEX_B_3156 exonContig_21 172216..172996 -
exon_7138_1exon_7138_1Tribonema minus UTEX_B_3156 exonContig_21 173229..173286 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_7138UTR3_7138Tribonema minus UTEX_B_3156 three_prime_UTRContig_21 172216..172242 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7138CDS_7138Tribonema minus UTEX_B_3156 CDSContig_21 172243..172896 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_7138UTR5_7138Tribonema minus UTEX_B_3156 five_prime_UTRContig_21 173229..173286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348219Trimin1|348219|estExt_Genemark1.C_Ctg_210020Tribonema minus UTEX_B_3156 polypeptideContig_21 172243..172896 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7138 ID=mRNA_7138|Name=jgi.p|Trimin1|348219|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=839bp|location=Sequence derived from alignment at Contig_21:172216..173286- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGGCGTCTCGGTTACCGACAAGGTCATTGGCACATCCGGGAGCTAAACTC
GCCAGCAGGCACCCGCAGAGCCGATCGCTCATTTGCTCAGCAGCATCATC
AGCACAAACGCAGGGCAGCAGCAGTAGCAGCAGTGGCTCGAGGGGAGGCC
ATGGCGCGATGAGCAAAGCCGACCCGAACTCCTTCGTGCAGGGGGAAATG
AGGGGGGTGGCGATGAAGCTGCACACCCGGGATCAAGCCCCCAGAGAGGG
GCAGCAGGAGGAAACGGGGAAGAAGTTTGCGGAATGGGCGCCGACGCGCG
CCGGCTACCTCCAGTTTCTAGTTGACTCTCGAGCAGTCTACTCCACCTTC
GACGAGGTGGTCGGCGCCAACGACGCCCTGGCGGCGTTGCGGGACACGGG
TCTCGAGCGCACGGCAGCCTTGGAAAAGGACATTGCGTGGATGCTGGAGA
CATACCCGGAGCTCGCGACGCCGCCCGTCTCGGACAACGCCGCCGCGTAC
TGCGCGTTCTTGAAAGACATTGCCGCAAAGAGCGTCCCCGGCTTCGTGTG
CCACTTCTACAACCACTACTTTGCGCACACGGCGGGCGGGATCATGATCG
GCAAGAAGGTCGCGGACCTGTGCCTGGGGGGGCAGAAGCTGGCGTTCTAC
CAGTGGGCGTCGGATGTCCGAGCGCTGCTTGACGCGGTGCGCGTCAACAT
CGACGCCATGGCCGACGGATGGAGCCGCGAGGAGAAGGATGAGTGCCTGG
ACGAAACGGCGCGCACGTTCAAGTACGGCGGGTCGCTCCTCGGCAGCATC
ACCGGCGCCTGAGAGAACCCCCCTGTTCGGGGAGCGAGG
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protein sequence of jgi.p|Trimin1|348219

>Trimin1|348219|estExt_Genemark1.C_Ctg_210020 ID=Trimin1|348219|estExt_Genemark1.C_Ctg_210020|Name=jgi.p|Trimin1|348219|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=218bp
MSKADPNSFVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGY
LQFLVDSRAVYSTFDEVVGANDALAALRDTGLERTAALEKDIAWMLETYP
ELATPPVSDNAAAYCAFLKDIAAKSVPGFVCHFYNHYFAHTAGGIMIGKK
VADLCLGGQKLAFYQWASDVRALLDAVRVNIDAMADGWSREEKDECLDET
ARTFKYGGSLLGSITGA*
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mRNA from alignment at Contig_21:172216..173286-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7138 ID=mRNA_7138|Name=jgi.p|Trimin1|348219|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1071bp|location=Sequence derived from alignment at Contig_21:172216..173286- (Tribonema minus UTEX_B_3156 )
CGGCGTCTCGGTTACCGACAAGGTCATTGGCACATCCGGGAGCTAAACTC GCCAGCAGGTGAGGGGGCATTGGCGTGTGCATGTTTCACATCAGATTGGA GCGAGTCATCAATGTCCATGCGTGGCGCGCAGATGTTTGCAAACAACAAT TGATGTAATCATAGCCTGTGTCTGGGAGCCTGCTCCTCTCTCATTTGTGC CGCTGCTTGCCATGTAGAACTACTCTGCTGGTACAGGCAACGACATAACA GCTCAGTGAATTACACTTCTCTTGCTCCACTGCGGTGCAGGCACCCGCAG AGCCGATCGCTCATTTGCTCAGCAGCATCATCAGCACAAACGCAGGGCAG CAGCAGTAGCAGCAGTGGCTCGAGGGGAGGCCATGGCGCGATGAGCAAAG CCGACCCGAACTCCTTCGTGCAGGGGGAAATGAGGGGGGTGGCGATGAAG CTGCACACCCGGGATCAAGCCCCCAGAGAGGGGCAGCAGGAGGAAACGGG GAAGAAGTTTGCGGAATGGGCGCCGACGCGCGCCGGCTACCTCCAGTTTC TAGTTGACTCTCGAGCAGTCTACTCCACCTTCGACGAGGTGGTCGGCGCC AACGACGCCCTGGCGGCGTTGCGGGACACGGGTCTCGAGCGCACGGCAGC CTTGGAAAAGGACATTGCGTGGATGCTGGAGACATACCCGGAGCTCGCGA CGCCGCCCGTCTCGGACAACGCCGCCGCGTACTGCGCGTTCTTGAAAGAC ATTGCCGCAAAGAGCGTCCCCGGCTTCGTGTGCCACTTCTACAACCACTA CTTTGCGCACACGGCGGGCGGGATCATGATCGGCAAGAAGGTCGCGGACC TGTGCCTGGGGGGGCAGAAGCTGGCGTTCTACCAGTGGGCGTCGGATGTC CGAGCGCTGCTTGACGCGGTGCGCGTCAACATCGACGCCATGGCCGACGG ATGGAGCCGCGAGGAGAAGGATGAGTGCCTGGACGAAACGGCGCGCACGT TCAAGTACGGCGGGTCGCTCCTCGGCAGCATCACCGGCGCCTGAGAGAAC CCCCCTGTTCGGGGAGCGAGG
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Coding sequence (CDS) from alignment at Contig_21:172216..173286-

>mRNA_7138 ID=mRNA_7138|Name=jgi.p|Trimin1|348219|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=654bp|location=Sequence derived from alignment at Contig_21:172216..173286- (Tribonema minus UTEX_B_3156 )
ATGAGCAAAGCCGACCCGAACTCCTTCGTGCAGGGGGAAATGAGGGGGGT
GGCGATGAAGCTGCACACCCGGGATCAAGCCCCCAGAGAGGGGCAGCAGG
AGGAAACGGGGAAGAAGTTTGCGGAATGGGCGCCGACGCGCGCCGGCTAC
CTCCAGTTTCTAGTTGACTCTCGAGCAGTCTACTCCACCTTCGACGAGGT
GGTCGGCGCCAACGACGCCCTGGCGGCGTTGCGGGACACGGGTCTCGAGC
GCACGGCAGCCTTGGAAAAGGACATTGCGTGGATGCTGGAGACATACCCG
GAGCTCGCGACGCCGCCCGTCTCGGACAACGCCGCCGCGTACTGCGCGTT
CTTGAAAGACATTGCCGCAAAGAGCGTCCCCGGCTTCGTGTGCCACTTCT
ACAACCACTACTTTGCGCACACGGCGGGCGGGATCATGATCGGCAAGAAG
GTCGCGGACCTGTGCCTGGGGGGGCAGAAGCTGGCGTTCTACCAGTGGGC
GTCGGATGTCCGAGCGCTGCTTGACGCGGTGCGCGTCAACATCGACGCCA
TGGCCGACGGATGGAGCCGCGAGGAGAAGGATGAGTGCCTGGACGAAACG
GCGCGCACGTTCAAGTACGGCGGGTCGCTCCTCGGCAGCATCACCGGCGC
CTGA
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