mRNA_7138 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|348219 vs. uniprot
Match: A0A835Z600_9STRA (Heme oxygenase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z600_9STRA) HSP 1 Score: 442 bits (1138), Expect = 3.200e-156 Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 3
Query: 159 MSKADPNSFVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVGANDALAALRDTGLERTAALEKDIAWMLETYPELATPPVSDNAAAYCAFLKDIAAKSVPGFVCHFYNHYFAHTAGGIMIGKKVADLCLGGQKLAFYQWASDVRALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLLGSITGA 809
MSKADPNSFVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVGANDALAALRDTGLERTAALEKDIAWMLETYPELATPPVSDNAAAYCAFLKDIAAKSVPGFVCHFYNHYFAHTAGGIMIGKKVADLCLGGQKLAFYQWASDVRALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLLGSITGA
Sbjct: 1 MSKADPNSFVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVGANDALAALRDTGLERTAALEKDIAWMLETYPELATPPVSDNAAAYCAFLKDIAAKSVPGFVCHFYNHYFAHTAGGIMIGKKVADLCLGGQKLAFYQWASDVRALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLLGSITGA 217
BLAST of jgi.p|Trimin1|348219 vs. uniprot
Match: A0A6H5KUU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU7_9PHAE) HSP 1 Score: 280 bits (715), Expect = 2.500e-90 Identity = 137/227 (60.35%), Postives = 164/227 (72.25%), Query Frame = 3
Query: 153 GAMSKADPNSFVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVGANDALAALRDTGLERTAALEKDIAWMLETYPEL---------ATPPVSDNAAAYCAFLKDIAAKSVPGFVCHFYNHYFAHTAGGIMIGKKVADLCLGGQKLAFYQW-ASDVRALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLLGSIT 803
G K D NSFVQ +MR AMKLHTRDQ+P+EG+QE G F++W P+R GYLQFLVDS+ VY +E G++ LA R+TGLERT AL KDIAWMLETY + P ++NA Y +FL++ A S+P F+CH+YNHYFAHTAGG MIG+KVA+ CL G+ L FYQW A DV+ LLD VRV IDAMA GWS EEK+ C+ ETARTFKYGGSLL SIT
Sbjct: 96 GVKPKTDKNSFVQWDMRRAAMKLHTRDQSPKEGKQENKGTPFSDWKPSRRGYLQFLVDSKVVYEALEEACGSDPRLAEFRNTGLERTEALTKDIAWMLETYSDSWAEGGGGDGKAPSPTENALEYASFLREKVASSLPAFMCHYYNHYFAHTAGGRMIGRKVAESCLDGRTLEFYQWGADDVKVLLDGVRVKIDAMAKGWSEEEKEACVSETARTFKYGGSLLSSIT 322
BLAST of jgi.p|Trimin1|348219 vs. uniprot
Match: D7FK52_ECTSI (Heme oxygenase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK52_ECTSI) HSP 1 Score: 255 bits (652), Expect = 1.820e-79 Identity = 130/244 (53.28%), Postives = 159/244 (65.16%), Query Frame = 3
Query: 153 GAMSKADPNSFVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVGANDALAALRDTGLERTAALEKDIAWMLETYPEL---------ATPPVSDNAAAYCAFLKDIAAKSVPGFVCHFYNHYFAHTAGGIMIGKKVA------------------DLCLGGQKLAFYQWASD-VRALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLLGSI 800
G K D NSFVQ +MR AMKLHTRDQ+P+EG+QE G KF++W P+R GYLQFLVDS+ VY +E G++ LA R+TGLERT AL KDIAWMLE YP+ P ++NA Y +FL++ A ++PGF+CH+YNHYFAHTAGG MIG+KVA D CL G+ L FYQW SD V+ LLD VRV IDAMA GWS EEK+ C+ ETARTF +G +
Sbjct: 96 GVKPKTDKNSFVQWDMRRAAMKLHTRDQSPKEGKQENKGTKFSDWKPSRRGYLQFLVDSKVVYEALEEACGSDPRLAEFRNTGLERTEALTKDIAWMLEAYPDSWAEGGGGDGKAPSPTENALEYASFLREKVASTLPGFMCHYYNHYFAHTAGGRMIGRKVAESALGVFFKHVSAFPFRSDSCLDGRTLEFYQWGSDDVKVLLDGVRVKIDAMAKGWSEEEKEACVSETARTFNLRVFFVGRM 339
BLAST of jgi.p|Trimin1|348219 vs. uniprot
Match: A0A8J5XQF0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XQF0_DIALT) HSP 1 Score: 222 bits (566), Expect = 2.530e-69 Identity = 115/213 (53.99%), Postives = 144/213 (67.61%), Query Frame = 3
Query: 162 SKADPNSFVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVGANDALAALRDTGLERTAALEKDIAWMLETYPELATPPVSDNAAAYCAFLKDIAAKSVPGFVCHFYNHYFAHTAGGIMIGKKVADLCLGGQKLAFYQWASDVRALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLLGSI 800
S FVQ EMR AM LHTRDQA +EGQQ+ K A+W PTR GYLQFLVDSR VY +E+VG LA L++TGLERT AL+KDIAW L ++ A Y A LK + S P F+CHFYN+YFAHTAGG MIGK+++D+ L G+ L FY+W DV+ LLDA R +IDAMA W+++E+D CL +TA +FK GG L+ S+
Sbjct: 4 STTQATGFVQTEMRKAAMALHTRDQA-KEGQQQAQ-KPLAKWEPTRKGYLQFLVDSRHVYGAVEEIVGERAELATLKNTGLERTVALDKDIAWFLSDEGGCQPTTPTEAATGYAAELKRL---STPAFICHFYNYYFAHTAGGRMIGKQMSDMLLDGRVLEFYKWDGDVKELLDAARQHIDAMAASWTQDERDACLAQTAASFKGGGGLMASL 211
BLAST of jgi.p|Trimin1|348219 vs. uniprot
Match: A0A6V1QVP2_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QVP2_HETAK) HSP 1 Score: 223 bits (568), Expect = 4.990e-69 Identity = 108/209 (51.67%), Postives = 147/209 (70.33%), Query Frame = 3
Query: 180 SFVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVGANDALAALRDTGLERTAALEKDIAWMLETYPELATPPVSDNAAAYCAFLKDIAAKSVPGFVCHFYNHYFAHTAGGIMIGKKVADLCLGGQKLAFYQWASDVRALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLLGSITG 806
SFVQ +MR AMKLHT+DQA REG+Q+ K ++W+P YLQFLVDSR VY T +++ + L ++TGLERTAAL++DIAWM E + + P S Y L+++ +S+PGFVCH+YNHYFAHTAGG+MIG+K+++ L G L FY+WA DV+ + AV +IDA+AD WS +K ECL+ET TF+YGG+LL ++G
Sbjct: 47 SFVQNDMRAYAMKLHTKDQA-REGEQKAQ-KPVSKWSPEPINYLQFLVDSRLVYQTMEDICNSTPGLEKFQNTGLERTAALDQDIAWMSEKF-SVDVPAASPLGQGYADVLREVVGRSLPGFVCHYYNHYFAHTAGGLMIGRKISEALLEGATLEFYKWAGDVKEMGMAVIRDIDALADTWSDAQKQECLEETGNTFRYGGALLSHLSG 252
BLAST of jgi.p|Trimin1|348219 vs. uniprot
Match: I0YPD9_COCSC (Heme oxygenase-like protein n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YPD9_COCSC) HSP 1 Score: 218 bits (554), Expect = 1.880e-67 Identity = 112/211 (53.08%), Postives = 146/211 (69.19%), Query Frame = 3
Query: 183 FVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVGAND--ALAALRDTGLERTAALEKDIAWMLETYPELATPPVSDNAA--AYCAFLKDIAAKSVPGFVCHFYNHYFAHTAGGIMIGKKVADLCLGGQKLAFYQWASDVRALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLLGSIT 803
FV+ EMR VAMKLHTRDQAP+EGQQE K + W PTR GYL+FL +S+ VY T + +V A ++TGLER+A L +DIAWM + Y LA +S++ AY + LK++A P F+CHFYN YFAHTAGG MIG KVA + L ++L FY++ D RA LD VR ++A+A+GW+REEKD CL+ET ++FKY G LL +IT
Sbjct: 7 FVE-EMRFVAMKLHTRDQAPKEGQQESAEKAWKAWEPTRVGYLRFLAESKEVYETLENIVAEASFPEYARFQNTGLERSAGLSEDIAWMQQEY-SLAPVQLSEDGPGRAYSSLLKELARDCPPKFLCHFYNVYFAHTAGGRMIGTKVASMILDSRELQFYKYEGDFRAKLDEVRAQLNAVAEGWTREEKDSCLEETQKSFKYSGGLLRTIT 215
BLAST of jgi.p|Trimin1|348219 vs. uniprot
Match: A0A0M0JY97_9EUKA (Heme oxygenase 1 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JY97_9EUKA) HSP 1 Score: 219 bits (558), Expect = 2.010e-67 Identity = 121/226 (53.54%), Postives = 149/226 (65.93%), Query Frame = 3
Query: 141 RGGHG-AMSKA--DPNSFVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVGANDALAALRDTGLERTAALEKDIAWMLETYPELATPPVSDNAAAYCAFLKDIAAKS-VPGFVCHFYNHYFAHTAGGIMIGKKVADLCLGGQKLAFYQWASDV-RALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLLGSIT 803
R HG AM+ A + SFVQ EMRG AM LHTRDQAPREG+Q + + W PTRA YLQFLVDSR VY T +E+V + A+ R +GLER AAL+KDIAW T+ E P V Y A L+ + A + FVCHFYN YFAHTAGG MIGK++A + L G L FYQW DV + LL +R IDA+ GWSRE+KD+CL ETA +FK GG+++ I+
Sbjct: 36 RAAHGLAMTAATGEVPSFVQTEMRGAAMALHTRDQAPREGKQPAQ-RPMSSWQPTRADYLQFLVDSRKVYRTLEEIVEETEMFASFRASGLERGAALDKDIAWFAATHGEK-EPAVKSQGETYAAELRKMVADGELERFVCHFYNFYFAHTAGGRMIGKRMAGMLLDGHTLEFYQWDGDVDQVLLPGLRTKIDALVAGWSREQKDKCLAETANSFKGGGAMMQHIS 259
BLAST of jgi.p|Trimin1|348219 vs. uniprot
Match: A0A2K3D9D4_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3D9D4_CHLRE) HSP 1 Score: 217 bits (553), Expect = 1.140e-66 Identity = 109/207 (52.66%), Postives = 144/207 (69.57%), Query Frame = 3
Query: 195 EMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVGANDALAALRDTGLERTAALEKDIAWMLETYPELATPPVSDNAAA--YCAFLKDIAAKSVPGFVCHFYNHYFAHTAGGIMIGKKVADLCLGGQKLAFYQWASDVRALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLLGSITGA 809
EMR VAMKLHT+DQAP+EG++E K W PTR GYL+FLV+S+ V+ TF+ +V ++DA ALR+TGLER L DIAWM +++ +LA P + + AA Y AFL+ +A P F+CH+YN YFAHTAGG MIG KV+ + L GQ L FY+W DV L+ VR +I+ MA+GW+ EK+ CL ET +FKY G +L +IT A
Sbjct: 60 EMRKVAMKLHTKDQAPKEGEKE--APKQGPWTPTRPGYLRFLVESKEVFDTFERLVNSSDAYKALRNTGLERGPGLAADIAWMEQSF-QLAPPDMKPDGAAATYVAFLEKLAKTDPPAFICHYYNFYFAHTAGGRMIGNKVSSMLLDGQTLEFYKWQGDVNEHLEGVRKSINVMAEGWTPAEKEHCLAETESSFKYSGQILRAITEA 263
BLAST of jgi.p|Trimin1|348219 vs. uniprot
Match: A0A0D2MSL3_9CHLO (Heme oxygenase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MSL3_9CHLO) HSP 1 Score: 216 bits (550), Expect = 3.240e-66 Identity = 110/228 (48.25%), Postives = 148/228 (64.91%), Query Frame = 3
Query: 150 HGAMSKAD--PNSFVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVGANDA--LAALRDTGLERTAALEKDIAWMLETY----PELATPPVSDNAAAYCAFLKDIAAKSVPGFVCHFYNHYFAHTAGGIMIGKKVADLCLGGQKLAFYQWASDVRALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLLGSITGA 809
HGA+S + F+ GEMR VAMKLHTRDQAP+EG Q+ + + W PTR GY++FL +SRAVYS F++++ + + TGLER AA++KD+AW ETY P+L P AY +A P F+CH+YN++FAHTAGG MIG KV+ + L +L FY++ DV LLDAVR I+A+++ W+RE+KD CL ETA TFKY GSL+ I G+
Sbjct: 37 HGAVSATELKKQGFI-GEMRAVAMKLHTRDQAPKEGGQKASPRPMPTWQPTREGYVRFLAESRAVYSAFEDIISKAERPEYEQFQGTGLERVAAIDKDLAWFQETYGISAPQL---PADSPGLAYAXXXXGLAVSDPPAFICHYYNYFFAHTAGGRMIGSKVSSMILDNAELEFYKYDGDVAPLLDAVRSKINALSESWTREQKDHCLQETADTFKYSGSLMPFIMGS 260
BLAST of jgi.p|Trimin1|348219 vs. uniprot
Match: A0A7R9TEH2_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TEH2_9VIRI) HSP 1 Score: 213 bits (543), Expect = 1.310e-65 Identity = 107/217 (49.31%), Postives = 141/217 (64.98%), Query Frame = 3
Query: 150 HGAMSKADPNSFVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYLQFLVDSRAVYSTFDEVVG---ANDALAALRDTGLERTAALEKDIAWMLETYPELATPPVSDNAAAYCAFLKDIAAKSVPGFVCHFYNHYFAHTAGGIMIGKKVADLCLGGQKLAFYQWASDVRALLDAVRVNIDAMADGWSREEKDECLDETARTFKYGGSLL 791
HG M GEMR AMKLHT++QAP+EGQ EE K ++W PTR Y Q+LVDS+ VY +EVV A+ LA + TGLER AL KD+ + Y + P ++ + Y AFL++ AA VPGF+CH+YN YFAHTAGG IGK ++D+ L G+KL FY W ++ +D VR +I++MA+GWS EEK CL+ETA +FKY G+LL
Sbjct: 11 HGRMGAPKKEDGFLGEMRAYAMKLHTKEQAPKEGQAEEPSKPMSKWEPTRELYAQYLVDSKVVYDALEEVVASAPADSPLAVFQSTGLERGPALAKDLEFFESEYG-IKAPEPTEAGSGYAAFLREKAASDVPGFMCHYYNVYFAHTAGGRQIGKMLSDMVLDGKKLEFYSWEGVLKDHMDGVRGSINSMAEGWSEEEKTACLEETAPSFKYAGTLL 226 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348219 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7138 ID=mRNA_7138|Name=jgi.p|Trimin1|348219|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=839bp|location=Sequence derived from alignment at Contig_21:172216..173286- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CGGCGTCTCGGTTACCGACAAGGTCATTGGCACATCCGGGAGCTAAACTCback to top protein sequence of jgi.p|Trimin1|348219 >Trimin1|348219|estExt_Genemark1.C_Ctg_210020 ID=Trimin1|348219|estExt_Genemark1.C_Ctg_210020|Name=jgi.p|Trimin1|348219|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=218bp MSKADPNSFVQGEMRGVAMKLHTRDQAPREGQQEETGKKFAEWAPTRAGYback to top mRNA from alignment at Contig_21:172216..173286- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7138 ID=mRNA_7138|Name=jgi.p|Trimin1|348219|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1071bp|location=Sequence derived from alignment at Contig_21:172216..173286- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_21:172216..173286- >mRNA_7138 ID=mRNA_7138|Name=jgi.p|Trimin1|348219|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=654bp|location=Sequence derived from alignment at Contig_21:172216..173286- (Tribonema minus UTEX_B_3156 )back to top |