mRNA_7124 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|162535
Unique NamemRNA_7124
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|162535 vs. uniprot
Match: A0A835Z4Q5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Q5_9STRA)

HSP 1 Score: 462 bits (1190), Expect = 1.570e-164
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 1 
Query:    1 MHTNLSAHHHHLFCSYRQVRAAGRRREWLESIVLVTLTAFGGHLLAQTLLREPPDLITCDTYLPLILASWYLVNHSPFNAIPALLAMPVVHQLAVVLMESHRAAVLCAVVTAAAGSLRAAGSAPNAPALPFFGPIIAGAVSACGGLFFPPDRGLRSLREGVPWPLQSALYAATFYHLAVHEQGPLGRFLRHYVLGAAVDAAAARAAVAALFSICGALQTAFGPSFNALAPLHAAVYAL 714
            MHTNLSAHHHHLFCSYRQVRAAGRRREWLESIVLVTLTAFGGHLLAQTLLREPPDLITCDTYLPLILASWYLVNHSPFNAIPALLAMPVVHQLAVVLMESHRAAVLCAVVTAAAGSLRAAGSAPNAPALPFFGPIIAGAVSACGGLFFPPDRGLRSLREGVPWPLQSALYAATFYHLAVHEQGPLGRFLRHYVLGAAVDAAAARAAVAALFSICGALQTAFGPSFNALAPLHAAVYAL
Sbjct:    1 MHTNLSAHHHHLFCSYRQVRAAGRRREWLESIVLVTLTAFGGHLLAQTLLREPPDLITCDTYLPLILASWYLVNHSPFNAIPALLAMPVVHQLAVVLMESHRAAVLCAVVTAAAGSLRAAGSAPNAPALPFFGPIIAGAVSACGGLFFPPDRGLRSLREGVPWPLQSALYAATFYHLAVHEQGPLGRFLRHYVLGAAVDAAAARAAVAALFSICGALQTAFGPSFNALAPLHAAVYAL 238
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BLAST of jgi.p|Trimin1|162535 vs. uniprot
Match: D7G2H0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2H0_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 1.010e-32
Identity = 82/225 (36.44%), Postives = 120/225 (53.33%), Query Frame = 1 
Query:   64 AGRRREWLESIVLVTLTAFGGHLLAQTLLREPPDLITCDTYLPLILASWYLVNHSPFNAIPALLAMPVVHQLAVVLMESHRAAVLCAVVTAAAGSLRAAGSAPNAPALPFFGPIIAGAVSACGGLFFPPDRGLRSLREGVPWPLQSALYAATFYHLAVHEQGPLGRFLRHYVLGAAVDAAA----------ARAAVAALFSICGALQTAFGPSFNALAPLHAAVY 708
            +G++  W ES+V+  + AFGG +LA  LL +PP +   D  +PL+   W++ N +    I AL+  P++ Q+ +VL E  RA  +C +V  +   L+     P A     +GPI+ G V  CGGLF P D+GL+ L+ G PWPLQSA Y + F++L V++   +G +LR        DAAA           RA VA    +    QT   P+FN   P+H  VY
Sbjct:   66 SGKQMFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPLVAVCWFVSNRAE-GPIFALINTPIMKQVILVLSEVFRANSMCGIVVLSNSILKPGKHYPIA----LWGPILLGTVGGCGGLFLPLDKGLKGLKNGAPWPLQSAFYGSMFFNLFVYDPN-VGPYLR--------DAAALFLDGDLVVQGRAIVAGFLCVVALAQTLISPAFNPFTPVHNVVY 276
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BLAST of jgi.p|Trimin1|162535 vs. uniprot
Match: A0A7S3MDR8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MDR8_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 5.960e-7
Identity = 56/213 (26.29%), Postives = 96/213 (45.07%), Query Frame = 1 
Query:   82 WLESIVLVTLTAFGGHLLAQTLLREPPDLITCDTYLPLILASWYLV-NHSPFNA-IPALLAMPVVHQLAVVLMESHRAAVLCAVVTAAAGSLRAAGSAPNAPALPFF--GPIIAGAVSACGGLFFPPDRGLRSLREGVPWPLQSALYAATFYHLAVHEQGPLGRFLRHYVLGAAVDAAAARAAVAALFSICGALQTAFGPSFNALAPLHAAVY 708
            W +++    + AFGG  LA  ++   P  +  +T+L +++ SWY+V N  P +  +  L+ + V  ++  V     +   +   +  AA ++ A    P++   PF    P++ G V  CGG F P   GL  + EG  W +++A  A   Y +       + RF    +L A +           +F I G L    GP  + L P+ AA+Y
Sbjct:   71 WAKAVTATGIAAFGGGFLAPLIVARTPVPLMEETFLWMVVVSWYIVHNLGPLSDFLSDLMKVEVSKKIFTVAFGIFKTTQIVGGLELAAKAVAAEDLLPHSAYFPFALAAPLLCGFVGGCGGAFLPFTNGLAPIEEGKVWNIRAAFLAPLAYLI-------MTRFCGVEMLNAKMTIC--------VFRILGDLFP--GPRDSMLGPVTAALY 266
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162535 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z4Q5_9STRA1.570e-164100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7G2H0_ECTSI1.010e-3236.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3MDR8_9STRA5.960e-726.29Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_21contigContig_21:69798..70511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|162535|e_gw1.21.175.1
Max annot lvl2759|Eukaryota
EggNOG OGs2BW3U@1|root,2SEWS@2759|Eukaryota
Evalue1.66e-33
Seed ortholog2880.D7G2H0
Hectar predicted targeting categoryother localisation
TranscriptId162857
TrackFilteredModels1
ProteinId162535
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162535gene_7124Tribonema minus UTEX_B_3156 geneContig_21 69798..70511 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7124_1exon_7124_1Tribonema minus UTEX_B_3156 exonContig_21 69798..70511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7124CDS_7124Tribonema minus UTEX_B_3156 CDSContig_21 69798..70511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162535Trimin1|162535|e_gw1.21.175.1Tribonema minus UTEX_B_3156 polypeptideContig_21 69798..70511 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7124 ID=mRNA_7124|Name=jgi.p|Trimin1|162535|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=714bp|location=Sequence derived from alignment at Contig_21:69798..70511+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCACACAAATTTATCTGCTCATCACCATCACCTCTTCTGCTCCTACCG
CCAGGTCCGTGCCGCCGGCAGACGTCGCGAGTGGCTGGAGAGCATCGTAC
TGGTGACTCTCACAGCCTTCGGCGGCCACCTCCTGGCTCAGACGCTGCTG
CGCGAGCCGCCCGACCTCATCACCTGCGATACATACCTACCCCTCATACT
GGCGTCGTGGTACCTGGTGAACCACTCCCCCTTCAACGCCATTCCTGCGC
TGCTGGCGATGCCCGTGGTTCACCAGTTGGCGGTGGTGCTCATGGAGTCG
CACCGCGCGGCAGTGCTCTGCGCAGTTGTAACTGCCGCTGCGGGGTCCCT
CCGCGCCGCGGGCTCCGCTCCCAACGCGCCAGCACTGCCTTTTTTCGGGC
CGATCATAGCGGGCGCCGTGTCTGCCTGCGGAGGGCTCTTCTTCCCCCCT
GATAGGGGGCTGCGGAGCCTGCGGGAGGGGGTCCCCTGGCCCCTTCAGAG
CGCCCTTTACGCAGCGACGTTCTACCATCTGGCGGTGCACGAACAGGGCC
CACTGGGGCGCTTCCTCAGGCACTACGTGCTCGGCGCTGCGGTTGACGCC
GCGGCCGCGCGCGCCGCCGTGGCAGCGCTCTTCAGCATATGCGGAGCGCT
GCAGACGGCCTTCGGGCCCAGCTTCAACGCGCTCGCGCCGCTGCACGCCG
CTGTGTACGCGCTC
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protein sequence of jgi.p|Trimin1|162535

>Trimin1|162535|e_gw1.21.175.1 ID=Trimin1|162535|e_gw1.21.175.1|Name=jgi.p|Trimin1|162535|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=238bp
MHTNLSAHHHHLFCSYRQVRAAGRRREWLESIVLVTLTAFGGHLLAQTLL
REPPDLITCDTYLPLILASWYLVNHSPFNAIPALLAMPVVHQLAVVLMES
HRAAVLCAVVTAAAGSLRAAGSAPNAPALPFFGPIIAGAVSACGGLFFPP
DRGLRSLREGVPWPLQSALYAATFYHLAVHEQGPLGRFLRHYVLGAAVDA
AAARAAVAALFSICGALQTAFGPSFNALAPLHAAVYAL
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mRNA from alignment at Contig_21:69798..70511+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7124 ID=mRNA_7124|Name=jgi.p|Trimin1|162535|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=714bp|location=Sequence derived from alignment at Contig_21:69798..70511+ (Tribonema minus UTEX_B_3156 )
ATGCACACAAATTTATCTGCTCATCACCATCACCTCTTCTGCTCCTACCG
CCAGGTCCGTGCCGCCGGCAGACGTCGCGAGTGGCTGGAGAGCATCGTAC
TGGTGACTCTCACAGCCTTCGGCGGCCACCTCCTGGCTCAGACGCTGCTG
CGCGAGCCGCCCGACCTCATCACCTGCGATACATACCTACCCCTCATACT
GGCGTCGTGGTACCTGGTGAACCACTCCCCCTTCAACGCCATTCCTGCGC
TGCTGGCGATGCCCGTGGTTCACCAGTTGGCGGTGGTGCTCATGGAGTCG
CACCGCGCGGCAGTGCTCTGCGCAGTTGTAACTGCCGCTGCGGGGTCCCT
CCGCGCCGCGGGCTCCGCTCCCAACGCGCCAGCACTGCCTTTTTTCGGGC
CGATCATAGCGGGCGCCGTGTCTGCCTGCGGAGGGCTCTTCTTCCCCCCT
GATAGGGGGCTGCGGAGCCTGCGGGAGGGGGTCCCCTGGCCCCTTCAGAG
CGCCCTTTACGCAGCGACGTTCTACCATCTGGCGGTGCACGAACAGGGCC
CACTGGGGCGCTTCCTCAGGCACTACGTGCTCGGCGCTGCGGTTGACGCC
GCGGCCGCGCGCGCCGCCGTGGCAGCGCTCTTCAGCATATGCGGAGCGCT
GCAGACGGCCTTCGGGCCCAGCTTCAACGCGCTCGCGCCGCTGCACGCCG
CTGTGTACGCGCTC
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Coding sequence (CDS) from alignment at Contig_21:69798..70511+

>mRNA_7124 ID=mRNA_7124|Name=jgi.p|Trimin1|162535|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=714bp|location=Sequence derived from alignment at Contig_21:69798..70511+ (Tribonema minus UTEX_B_3156 )
ATGCACACAAATTTATCTGCTCATCACCATCACCTCTTCTGCTCCTACCG
CCAGGTCCGTGCCGCCGGCAGACGTCGCGAGTGGCTGGAGAGCATCGTAC
TGGTGACTCTCACAGCCTTCGGCGGCCACCTCCTGGCTCAGACGCTGCTG
CGCGAGCCGCCCGACCTCATCACCTGCGATACATACCTACCCCTCATACT
GGCGTCGTGGTACCTGGTGAACCACTCCCCCTTCAACGCCATTCCTGCGC
TGCTGGCGATGCCCGTGGTTCACCAGTTGGCGGTGGTGCTCATGGAGTCG
CACCGCGCGGCAGTGCTCTGCGCAGTTGTAACTGCCGCTGCGGGGTCCCT
CCGCGCCGCGGGCTCCGCTCCCAACGCGCCAGCACTGCCTTTTTTCGGGC
CGATCATAGCGGGCGCCGTGTCTGCCTGCGGAGGGCTCTTCTTCCCCCCT
GATAGGGGGCTGCGGAGCCTGCGGGAGGGGGTCCCCTGGCCCCTTCAGAG
CGCCCTTTACGCAGCGACGTTCTACCATCTGGCGGTGCACGAACAGGGCC
CACTGGGGCGCTTCCTCAGGCACTACGTGCTCGGCGCTGCGGTTGACGCC
GCGGCCGCGCGCGCCGCCGTGGCAGCGCTCTTCAGCATATGCGGAGCGCT
GCAGACGGCCTTCGGGCCCAGCTTCAACGCGCTCGCGCCGCTGCACGCCG
CTGTGTACGCGCTC
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