mRNA_7104 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|167875 vs. uniprot
Match: A0A835YTE0_9STRA (Ion_trans_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTE0_9STRA) HSP 1 Score: 353 bits (907), Expect = 2.730e-123 Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 1 Query: 1 MHGAPRQKLSAADPPTTPFPFRRLFQSLSGAQVLQHYERVRPVNYEALSLLRFAVLLPLVTHIMGCGLFIVAEVAADAYDFRDDNGIQDYSRYRQWLYGIYWASMTLSTIGYGDVGLVTSSERAYAIVCMMVGATMYAYLCGAIINIILTMGSFESERQARLKAVNLFMAEVKVRMYMYL 540 MHGAPRQKLSAADPPTTPFPFRRLFQSLSGAQVLQHYERVRPVNYEALSLLRFAVLLPLVTHIMGCGLFIVAEVAADAYDFRDDNGIQDYSRYRQWLYGIYWASMTLSTIGYGDVGLVTSSERAYAIVCMMVGATMYAYLCGAIINIILTMGSFESERQARLKAVNLFMAEVKVRMYMYL Sbjct: 1 MHGAPRQKLSAADPPTTPFPFRRLFQSLSGAQVLQHYERVRPVNYEALSLLRFAVLLPLVTHIMGCGLFIVAEVAADAYDFRDDNGIQDYSRYRQWLYGIYWASMTLSTIGYGDVGLVTSSERAYAIVCMMVGATMYAYLCGAIINIILTMGSFESERQARLKAVNLFMAEVKVRMYMYL 180
BLAST of jgi.p|Trimin1|167875 vs. uniprot
Match: A0A836CIA7_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIA7_9STRA) HSP 1 Score: 187 bits (475), Expect = 1.790e-53 Identity = 95/155 (61.29%), Postives = 120/155 (77.42%), Query Frame = 1 Query: 61 FRRLFQSLSGAQVLQHYERVRPVNYEALSLLRFAVLLPLVTHIMGCGLFIVAEVAADAYDFRDDNGIQDYSRYRQWLYGIYWASMTLSTIGYGDVGLVTSSERAYAIVCMMVGATMYAYLCGAIINIILTMGSFESERQARLKAVNLFMAEVKVR 525 F RL Q+LSG +L+ YE PVNYEA+ L RFAVLLPLV HIMGCGL+IVA+VA+++YDFR+ N I S + QW+YGIYWA+MT+STIGYGDV LVT ER YAIVCM+VGA++YAYL GA+I I++ S E +R+ +L A+N MA+ K R Sbjct: 204 FGRLAQALSGKHLLRQYEWREPVNYEAIQLARFAVLLPLVLHIMGCGLYIVADVASESYDFRNANDIVHDSDFLQWVYGIYWAAMTVSTIGYGDVSLVTFVERGYAIVCMIVGASLYAYLVGALIAIVMEFASKEQDRREKLTAINDLMAQAKAR 358
BLAST of jgi.p|Trimin1|167875 vs. uniprot
Match: A0A835Z0D8_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0D8_9STRA) HSP 1 Score: 172 bits (437), Expect = 5.010e-47 Identity = 98/183 (53.55%), Postives = 120/183 (65.57%), Query Frame = 1 Query: 61 FRRLFQSLSGAQ-VLQHYERVRPVNYEALSLL----------------------------RFAVLLPLVTHIMGCGLFIVAEVAADAYDFRDDNGIQDYSRYRQWLYGIYWASMTLSTIGYGDVGLVTSSERAYAIVCMMVGATMYAYLCGAIINIILTMGSFESERQARLKAVNLFMAEVKV 522 F RL Q+LSG Q +L YER RPV+Y+ LSLL R AVLLPLV HIMGCGL+IVA + + YDFR+ NGI+ S + QW++GIYWA+MT +TIGYGDV LVT +ERAY I+CM+VGAT YAYL G +I I+ TM E ER+ARL AVN MA+VK+ Sbjct: 184 FGRLAQTLSGQQGMLSQYERSRPVSYDPLSLLXXXXXXXXXXXXXXXXXXXXXXXXXXLARLAVLLPLVLHIMGCGLYIVASLEHETYDFREANGIEGDSVFEQWVFGIYWAAMTCTTIGYGDVVLVTYAERAYVIICMLVGATCYAYLVGTMIGILATMAKKERERRARLTAVNELMADVKL 366
BLAST of jgi.p|Trimin1|167875 vs. uniprot
Match: A0A835YZG9_9STRA (Ion_trans_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZG9_9STRA) HSP 1 Score: 168 bits (426), Expect = 3.120e-45 Identity = 83/133 (62.41%), Postives = 105/133 (78.95%), Query Frame = 1 Query: 136 EALSLLRFAVLLPLVTHIMGCGLFIVAEVAADAYDFRDDNGIQDYSRYRQWLYGIYWASMTLSTIGYGDVGLVTSSERAYAIVCMMVGATMYAYLCGAIINIILTMGSFESERQARLKAVNLFMAEVKVRMYM 534 E L L RFAVLLPLV H MGCGL+I+A +A + YDFR+ NGI+ S++ QW+YGIYWA+MT+STIGYGDV LVT +ER YAI CM++GAT YAYL GA+INI+L MG+ E ER+ L AVN MA +K+ ++M Sbjct: 460 ELLQLWRFAVLLPLVLHFMGCGLYIIANIANETYDFREANGIEGDSQFLQWVYGIYWAAMTVSTIGYGDVSLVTYAERGYAIACMIIGATCYAYLVGAVINIMLKMGAKEQERRDGLAAVNYLMANIKLPVHM 592
BLAST of jgi.p|Trimin1|167875 vs. uniprot
Match: A0A835Z1Q1_9STRA (Ion_trans_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Q1_9STRA) HSP 1 Score: 132 bits (332), Expect = 2.010e-36 Identity = 64/107 (59.81%), Postives = 82/107 (76.64%), Query Frame = 1 Query: 166 LLPLVTHIMGCGLFIVAEVAADAYDFRDDNGIQDYSRYRQWLYGIYWASMTLSTIGYGDVGLVTSSERAYAIVCMMVGATMYAYLCGAIINIILTMGSFESERQARL 486 +LPLV H+MGCGLFIVA +A + YDFR N I S + QW+YGIYWA+MT+STIGYGDV LVT +ER YAI CM+VGA++YAY GA+INI ++ S S+++ L Sbjct: 1 MLPLVLHVMGCGLFIVANIAGEGYDFRQANDIGQDSDFLQWVYGIYWAAMTVSTIGYGDVELVTFAERGYAIACMLVGASLYAYHIGALINITRSIVSMPSQQRLTL 107
BLAST of jgi.p|Trimin1|167875 vs. uniprot
Match: A0A7S3XPY5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPY5_HETAK) HSP 1 Score: 107 bits (268), Expect = 7.120e-26 Identity = 55/138 (39.86%), Postives = 86/138 (62.32%), Query Frame = 1 Query: 94 QVLQHYERVRPVNYEALSLLRFAVLLPLVTHIMGCGLFIVAEVAADAYDFRDDNGIQDYSRYRQWLYGIYWASMTLSTIGYGDVGLVTSSERAYAIVCMMVGATMYAYLCGAIINIILTMGSFESERQARLKAVNLFM 507 ++ Q Y+ +NY L+LL+F V + + H+M CGL + ++ D+ + D N + D S Q++ +YWASMT+STIGYGD+ LVT +ER YA +CMMVGAT YA++ G + +I+ + S+ L +N +M Sbjct: 55 RMFQSYQMDYSINYNQLALLKFLVSIVFIIHLMTCGLIFLPQIQ-DSDGWLDANEVTDMSMGDQYIVAMYWASMTVSTIGYGDISLVTQAERVYASICMMVGATAYAFIVGQLCGLIVNLDKEGSQFTNELSDLNQYM 191
BLAST of jgi.p|Trimin1|167875 vs. uniprot
Match: A0A7S3XPY6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPY6_HETAK) HSP 1 Score: 110 bits (275), Expect = 5.800e-25 Identity = 52/143 (36.36%), Postives = 90/143 (62.94%), Query Frame = 1 Query: 94 QVLQHYERVRPVNYEALSLLRFAVLLPLVTHIMGCGLFIVAEVAADAYDFRDDNGIQDYSRYRQWLYGIYWASMTLSTIGYGDVGLVTSSERAYAIVCMMVGATMYAYLCGAIINIILTMGSFESERQARLKAVNLFMAEVKV 522 ++ Q Y+ VNY +L++F + + H+M CGL + E+ D Y ++D+NG++ S ++++ +YW++MT+STIGYGDV LVT +ER YA +CM++GA YA++ G + +I+ + + + L +N FMA K+ Sbjct: 55 RLFQTYQMDFAVNYNTFALVKFLTTIIFIVHMMSCGLVFLEELTEDGYTWQDENGVRGQSTGYRYIWAMYWSTMTVSTIGYGDVSLVTQAERLYASLCMIIGAMSYAFIVGQLCTLIVNLDKEGVQFRDDLSDLNRFMANEKL 197
BLAST of jgi.p|Trimin1|167875 vs. uniprot
Match: A0A7S4D4V8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4V8_HETAK) HSP 1 Score: 107 bits (268), Expect = 6.770e-25 Identity = 55/138 (39.86%), Postives = 86/138 (62.32%), Query Frame = 1 Query: 94 QVLQHYERVRPVNYEALSLLRFAVLLPLVTHIMGCGLFIVAEVAADAYDFRDDNGIQDYSRYRQWLYGIYWASMTLSTIGYGDVGLVTSSERAYAIVCMMVGATMYAYLCGAIINIILTMGSFESERQARLKAVNLFM 507 ++ Q Y+ +NY L+LL+F V + + H+M CGL + ++ D+ + D N + D S Q++ +YWASMT+STIGYGD+ LVT +ER YA +CMMVGAT YA++ G + +I+ + S+ L +N +M Sbjct: 166 RMFQSYQMDYSINYNQLALLKFLVSIVFIIHLMTCGLIFLPQIQ-DSDGWLDANEVTDMSMGDQYIVAMYWASMTVSTIGYGDISLVTQAERVYASICMMVGATAYAFIVGQLCGLIVNLDKEGSQFTNELSDLNQYM 302
BLAST of jgi.p|Trimin1|167875 vs. uniprot
Match: A0A7S4DBB3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBB3_HETAK) HSP 1 Score: 89.7 bits (221), Expect = 1.340e-17 Identity = 52/146 (35.62%), Postives = 81/146 (55.48%), Query Frame = 1 Query: 82 LSGAQVLQHYERVRPVNYEALSLLRFAVLLPLVTHIMGCGLFIVAEVAADAYDFR--DDNGIQDYSRYRQWLYGIYWASMTLSTIGYGDVGLVTSSERAYAIVCMMVGATMYAYLCGAIINIILTMGSFESERQARLKAVNLFMAE 513 L + V + Y VN+ + L+ + + H+M CGL A D+ DN + D+S +L YWA+MT+STIGYGD+ LVT +ER YAI CM++GA+ YA + G + +I++M S +++L +N MA+ Sbjct: 128 LKASNVFEKYYADFSVNFNVMEGLKMLFITLFLIHLMACGLVYTAVNFPGEGDWTWLHDNEVIDWSGKDLYLIAFYWATMTVSTIGYGDIALVTQAERVYAICCMIIGASTYACITGQLCTLIISMTSGSQLFKSQLGVLNSVMAD 273
BLAST of jgi.p|Trimin1|167875 vs. uniprot
Match: A0A090M763_OSTTA (IQ motif, EF-hand binding site n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M763_OSTTA) HSP 1 Score: 85.9 bits (211), Expect = 3.160e-16 Identity = 47/154 (30.52%), Postives = 85/154 (55.19%), Query Frame = 1 Query: 91 AQVLQHYERVRPVNYEALSLLRFAVLLPLVTHIMGCGLFIVAEVAADAYDFR---DDNGI----------QDYSRYRQWLYGIYWASMTLSTIGYGDVGLVTSSERAYAIVCMMVGATMYAYLCGAIINIILTMGSFESERQARLKAVNLFMAE 513 +++ ++ E ++Y + L++F + + H + CG +V ++ +Y + D G+ + +R +L +YW++MT+STIGYGD+ VTS ER Y I+ M++GA Y Y+ GA+ N+I T ++ QA ++ +N FM E Sbjct: 289 SRLYKNLELKYSLDYSLIELVKFGITAVMFAHWLACGFGLVEDLERASYSWSRLTDFGGVVVGVDGGDPREIVGSFRLYLAALYWSTMTISTIGYGDIVPVTSGERVYVIIAMLIGAFEYGYIVGAVSNVIATRNEKTNKFQALMRDLNSFMGE 442 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167875 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7104 ID=mRNA_7104|Name=jgi.p|Trimin1|167875|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=543bp|location=Sequence derived from alignment at Contig_54:704355..705709+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCACGGCGCGCCGCGGCAGAAATTAAGCGCCGCTGACCCCCCCACCACback to top protein sequence of jgi.p|Trimin1|167875 >Trimin1|167875|e_gw1.54.145.1 ID=Trimin1|167875|e_gw1.54.145.1|Name=jgi.p|Trimin1|167875|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=181bp MHGAPRQKLSAADPPTTPFPFRRLFQSLSGAQVLQHYERVRPVNYEALSLback to top mRNA from alignment at Contig_54:704355..705709+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7104 ID=mRNA_7104|Name=jgi.p|Trimin1|167875|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1355bp|location=Sequence derived from alignment at Contig_54:704355..705709+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_54:704355..705709+ >mRNA_7104 ID=mRNA_7104|Name=jgi.p|Trimin1|167875|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=543bp|location=Sequence derived from alignment at Contig_54:704355..705709+ (Tribonema minus UTEX_B_3156 )back to top |