mRNA_7090 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|151017
Unique NamemRNA_7090
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|151017 vs. uniprot
Match: A0A835YQH0_9STRA (Sec-independent periplasmic protein translocase TatC (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQH0_9STRA)

HSP 1 Score: 201 bits (512), Expect = 2.600e-65
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 
Query:    1 ELFFDEHIEEIRQRGFQSLIIIFSFILVAFLEIKGIVQILEIPVENVRFFQAAPGEYFLSTLKIAFYTGFIFSIPILLSQFIFFLLPGLTSREKKLIIGLLLSSVLLFLFG 333
            ELFFDEHIEEIRQRGFQSLIIIFSFILVAFLEIKGIVQILEIPVENVRFFQAAPGEYFLSTLKIAFYTGFIFSIPILLSQFIFFLLPGLTSREKKLIIGLLLSSVLLFLFG
Sbjct:    1 ELFFDEHIEEIRQRGFQSLIIIFSFILVAFLEIKGIVQILEIPVENVRFFQAAPGEYFLSTLKIAFYTGFIFSIPILLSQFIFFLLPGLTSREKKLIIGLLLSSVLLFLFG 111
[Close]
BLAST of jgi.p|Trimin1|151017 vs. uniprot
Match: B7T1R2_VAULI (Photosystem assembly protein Ycf3 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1R2_VAULI)

HSP 1 Score: 134 bits (336), Expect = 1.030e-36
Identity = 72/111 (64.86%), Postives = 89/111 (80.18%), Query Frame = 1 
Query:    1 ELFFDEHIEEIRQRGFQSLIIIFSFILVAFLEIKGIVQILEIPVENVRFFQAAPGEYFLSTLKIAFYTGFIFSIPILLSQFIFFLLPGLTSREKKLIIGLLLSSVLLFLFG 333
            ELF +EHIEEIRQR  QS+  IF FIL +F+++K IV++LEIPV N+ FFQ +PGEYFL TLKI+ YTG IFSIPILL+Q IFFLLPGL ++EK  ++GL+L S  LF FG
Sbjct:   25 ELFTNEHIEEIRQRLTQSIFSIFLFILFSFIKMKSIVKVLEIPVGNIHFFQNSPGEYFLLTLKISIYTGLIFSIPILLTQIIFFLLPGLRNQEKNFVVGLILGSFSLFSFG 135
[Close]
BLAST of jgi.p|Trimin1|151017 vs. uniprot
Match: A0A0K2RW74_9STRA (Sec-independent periplasmic protein translocase n=1 Tax=Triparma laevis TaxID=1534972 RepID=A0A0K2RW74_9STRA)

HSP 1 Score: 127 bits (319), Expect = 2.950e-34
Identity = 67/111 (60.36%), Postives = 86/111 (77.48%), Query Frame = 1 
Query:    1 ELFFDEHIEEIRQRGFQSLIIIFSFILVAFLEIKGIVQILEIPVENVRFFQAAPGEYFLSTLKIAFYTGFIFSIPILLSQFIFFLLPGLTSREKKLIIGLLLSSVLLFLFG 333
            EL F EHIEE+RQR FQ ++II     V+F+E+K +V+ILE+PV NV+FFQAAPGEYFLSTLKI+FYTG +F  P  L Q + FLLPGLT  EK++I+ LL +S++LF  G
Sbjct:   18 ELPFSEHIEELRQRSFQLVLIILLLTCVSFVEVKFLVKILELPVSNVKFFQAAPGEYFLSTLKISFYTGLLFGSPFALGQILLFLLPGLTQNEKRIILPLLFASLILFGLG 128
[Close]
BLAST of jgi.p|Trimin1|151017 vs. uniprot
Match: A0A7S1BS39_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BS39_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.410e-34
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 1 
Query:    1 ELFFDEHIEEIRQRGFQSLIIIFSFILVAFLEIKGIVQILEIPVENVRFFQAAPGEYFLSTLKIAFYTGFIFSIPILLSQFIFFLLPGLTSREKKLIIGLLLSSVLLFLFG 333
            EL F EH+EE+RQR FQ   II      AF+E+K IV+ILE+PV +V+FFQ +PGEYF+ST+KI+FY G +FS P +LSQ + FLLPGLT  EKK+I+ LLLSS++LF  G
Sbjct:   23 ELPFSEHVEELRQRSFQVFWIILLLTFAAFIEVKFIVKILELPVADVKFFQISPGEYFISTVKISFYAGLLFSSPFILSQLLLFLLPGLTENEKKIILPLLLSSLVLFGLG 133
[Close]
BLAST of jgi.p|Trimin1|151017 vs. uniprot
Match: A0A2U9NLZ2_9STRA (Sec-independent protein translocase-like protein n=1 Tax=Proboscia sp. TaxID=1923967 RepID=A0A2U9NLZ2_9STRA)

HSP 1 Score: 127 bits (318), Expect = 4.170e-34
Identity = 66/111 (59.46%), Postives = 87/111 (78.38%), Query Frame = 1 
Query:    1 ELFFDEHIEEIRQRGFQSLIIIFSFILVAFLEIKGIVQILEIPVENVRFFQAAPGEYFLSTLKIAFYTGFIFSIPILLSQFIFFLLPGLTSREKKLIIGLLLSSVLLFLFG 333
            EL   EHIEE+RQR F ++ II   +  +F+E+K +VQILE PV NV+FFQ++PGEYF+ST+KI+FYTG +FS P LLSQ I FLLPGLT  E K+I+ +LL S++LF+FG
Sbjct:   18 ELPVSEHIEELRQRSFHTVCIIILLVSFSFIEVKSLVQILEFPVNNVKFFQSSPGEYFVSTVKISFYTGLLFSTPFLLSQIILFLLPGLTKTEIKVILPILLISLILFVFG 128
[Close]
BLAST of jgi.p|Trimin1|151017 vs. uniprot
Match: A0A023HA18_9STRA (Sec-independent protein translocase component TatC n=1 Tax=Asterionella formosa TaxID=210441 RepID=A0A023HA18_9STRA)

HSP 1 Score: 124 bits (311), Expect = 4.690e-33
Identity = 68/111 (61.26%), Postives = 85/111 (76.58%), Query Frame = 1 
Query:    1 ELFFDEHIEEIRQRGFQSLIIIFSFILVAFLEIKGIVQILEIPVENVRFFQAAPGEYFLSTLKIAFYTGFIFSIPILLSQFIFFLLPGLTSREKKLIIGLLLSSVLLFLFG 333
            EL F EHIEE+RQR F    II     +AFLE+K IV+ILE+P+ NV+FFQ APGEYF+STLKI+FYTG +F+ P ++ Q I FLLPGLT +E K+I+ LLLSS+LLF  G
Sbjct:   18 ELPFSEHIEELRQRLFLLFWIILLLTSIAFLEVKIIVKILELPISNVKFFQTAPGEYFISTLKISFYTGLLFTSPFVIGQLILFLLPGLTKKETKIILPLLLSSLLLFGLG 128
[Close]
BLAST of jgi.p|Trimin1|151017 vs. uniprot
Match: A0A023HBS3_9STRA (Sec-independent protein translocase component TatC n=2 Tax=Gomphonemataceae TaxID=97225 RepID=A0A023HBS3_9STRA)

HSP 1 Score: 124 bits (310), Expect = 6.620e-33
Identity = 67/111 (60.36%), Postives = 85/111 (76.58%), Query Frame = 1 
Query:    1 ELFFDEHIEEIRQRGFQSLIIIFSFILVAFLEIKGIVQILEIPVENVRFFQAAPGEYFLSTLKIAFYTGFIFSIPILLSQFIFFLLPGLTSREKKLIIGLLLSSVLLFLFG 333
            EL F EHIEE+RQR F    +I     +AF+E+K +V+ILE+PV NV+FFQ APGEYF+ST+KI+FYTG +FS P ++SQ I FLLPGLT +E K+I+ LLL S  LFLFG
Sbjct:   18 ELPFSEHIEELRQRIFLLFWVILFLTCIAFIEVKSLVKILELPVSNVKFFQVAPGEYFISTIKISFYTGILFSSPFVISQLILFLLPGLTKKETKIILPLLLGS--LFLFG 126
[Close]
BLAST of jgi.p|Trimin1|151017 vs. uniprot
Match: A0A0K1DC26_PSEMU (Sec-independent protein translocase component TatC n=10 Tax=Bacillariaceae TaxID=33852 RepID=A0A0K1DC26_PSEMU)

HSP 1 Score: 123 bits (308), Expect = 1.320e-32
Identity = 64/111 (57.66%), Postives = 86/111 (77.48%), Query Frame = 1 
Query:    1 ELFFDEHIEEIRQRGFQSLIIIFSFILVAFLEIKGIVQILEIPVENVRFFQAAPGEYFLSTLKIAFYTGFIFSIPILLSQFIFFLLPGLTSREKKLIIGLLLSSVLLFLFG 333
            EL F EH+EE+RQR F  + II  F   AF+E+K +V+ILE+P+ NV+FFQ +PGEYF+ST+KIAFYTG +FS P+ + Q I FLLPGLT +E K+I+ LL+SS++LF  G
Sbjct:   18 ELPFSEHVEELRQRIFLIVGIILLFTCFAFVEVKSLVKILELPINNVKFFQLSPGEYFISTVKIAFYTGLLFSSPVAIGQLILFLLPGLTKKETKIILPLLISSLILFGLG 128
[Close]
BLAST of jgi.p|Trimin1|151017 vs. uniprot
Match: A0A2U9NMT5_9STRA (Sec-independent protein translocase-like protein n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A2U9NMT5_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.320e-32
Identity = 63/111 (56.76%), Postives = 87/111 (78.38%), Query Frame = 1 
Query:    1 ELFFDEHIEEIRQRGFQSLIIIFSFILVAFLEIKGIVQILEIPVENVRFFQAAPGEYFLSTLKIAFYTGFIFSIPILLSQFIFFLLPGLTSREKKLIIGLLLSSVLLFLFG 333
            EL F EH+EE+RQR F    II     +AFL++K +V+ILE+PV+NV+FFQ +PGEYF+ST+KI+FYTG +FS P ++SQ + FLLPGLT +E K+I+ LL+SS++LF  G
Sbjct:   18 ELPFSEHVEELRQRCFHIFWIILFLTTIAFLDVKFLVKILELPVDNVKFFQLSPGEYFVSTVKISFYTGLLFSSPFVISQILLFLLPGLTEKETKVILPLLISSLILFCLG 128
[Close]
BLAST of jgi.p|Trimin1|151017 vs. uniprot
Match: A0A023HBH7_9STRA (Sec-independent protein translocase component TatC n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A023HBH7_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.870e-32
Identity = 67/111 (60.36%), Postives = 84/111 (75.68%), Query Frame = 1 
Query:    1 ELFFDEHIEEIRQRGFQSLIIIFSFILVAFLEIKGIVQILEIPVENVRFFQAAPGEYFLSTLKIAFYTGFIFSIPILLSQFIFFLLPGLTSREKKLIIGLLLSSVLLFLFG 333
            EL F EHIEE+RQR F    II     VAF E+K +V+ILE PV NV+FFQ +PGEYF+ST+KI+FYTG +FS P ++SQ I FLLPGLT +E K+I+ LLLSS++LF  G
Sbjct:   18 ELPFSEHIEELRQRIFHLFWIILLLTCVAFFEVKILVKILEFPVNNVKFFQISPGEYFISTIKISFYTGLLFSSPFVISQLILFLLPGLTKKETKIILPLLLSSLILFGLG 128
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151017 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YQH0_9STRA2.600e-65100.00Sec-independent periplasmic protein translocase Ta... [more]
B7T1R2_VAULI1.030e-3664.86Photosystem assembly protein Ycf3 n=1 Tax=Vaucheri... [more]
A0A0K2RW74_9STRA2.950e-3460.36Sec-independent periplasmic protein translocase n=... [more]
A0A7S1BS39_9STRA3.410e-3459.46Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A2U9NLZ2_9STRA4.170e-3459.46Sec-independent protein translocase-like protein n... [more]
A0A023HA18_9STRA4.690e-3361.26Sec-independent protein translocase component TatC... [more]
A0A023HBS3_9STRA6.620e-3360.36Sec-independent protein translocase component TatC... [more]
A0A0K1DC26_PSEMU1.320e-3257.66Sec-independent protein translocase component TatC... [more]
A0A2U9NMT5_9STRA1.320e-3256.76Sec-independent protein translocase-like protein n... [more]
A0A023HBH7_9STRA1.870e-3260.36Sec-independent protein translocase component TatC... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_54contigContig_54:625873..626205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|151017|gw1.54.180.1
KEGG TC2.A.64
BRITEko00000,ko00001,ko00002,ko00194,ko02044
KEGG ModuleM00162,M00336
KEGG Pathwayko00195,ko01100,ko03060,ko03070,map00195,map01100,map03060,map03070
KEGG koko:K02634,ko:K03118
GOsGO:0000003,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006810,GO:0006886,GO:0006996,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009566,GO:0009567,GO:0009579,GO:0009657,GO:0009668,GO:0009977,GO:0009987,GO:0010027,GO:0015031,GO:0015291,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0019953,GO:0022414,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0031360,GO:0031361,GO:0031976,GO:0031984,GO:0032991,GO:0033036,GO:0033281,GO:0034357,GO:0034613,GO:0042651,GO:0042886,GO:0042887,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043235,GO:0043953,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0055035,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0098796,GO:0098797,GO:1904680
Preferred nametatC
Descriptionprotein transport by the Tat complex
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0805@1|root,2QVCB@2759|Eukaryota
Evalue3.84e-31
Seed ortholog159749.E7BWE0
Hectar predicted targeting categorysignal anchor
TranscriptId151339
TrackFilteredModels1
ProteinId151017
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151017gene_7090Tribonema minus UTEX_B_3156 geneContig_54 625873..626205 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7090_1exon_7090_1Tribonema minus UTEX_B_3156 exonContig_54 625873..626205 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7090CDS_7090Tribonema minus UTEX_B_3156 CDSContig_54 625873..626205 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151017Trimin1|151017|gw1.54.180.1Tribonema minus UTEX_B_3156 polypeptideContig_54 625873..626205 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7090 ID=mRNA_7090|Name=jgi.p|Trimin1|151017|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=333bp|location=Sequence derived from alignment at Contig_54:625873..626205- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAACTTTTTTTTGATGAGCATATTGAAGAAATTCGACAAAGGGGTTTTCA
AAGTTTAATTATTATTTTTTCTTTTATTCTAGTTGCATTTTTAGAAATTA
AAGGAATTGTACAGATACTCGAGATTCCTGTTGAAAATGTTCGTTTTTTC
CAAGCGGCTCCTGGTGAATACTTTTTATCTACTTTGAAAATTGCCTTTTA
TACAGGTTTTATTTTTAGTATTCCGATTCTGCTTAGCCAATTTATTTTCT
TTTTATTACCTGGTTTAACAAGTAGAGAAAAAAAACTGATAATAGGTTTA
TTATTAAGCTCGGTTTTGTTATTTTTATTTGGG
back to top

protein sequence of jgi.p|Trimin1|151017

>Trimin1|151017|gw1.54.180.1 ID=Trimin1|151017|gw1.54.180.1|Name=jgi.p|Trimin1|151017|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=111bp
ELFFDEHIEEIRQRGFQSLIIIFSFILVAFLEIKGIVQILEIPVENVRFF
QAAPGEYFLSTLKIAFYTGFIFSIPILLSQFIFFLLPGLTSREKKLIIGL
LLSSVLLFLFG
back to top

mRNA from alignment at Contig_54:625873..626205-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7090 ID=mRNA_7090|Name=jgi.p|Trimin1|151017|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=333bp|location=Sequence derived from alignment at Contig_54:625873..626205- (Tribonema minus UTEX_B_3156 )
GAACTTTTTTTTGATGAGCATATTGAAGAAATTCGACAAAGGGGTTTTCA
AAGTTTAATTATTATTTTTTCTTTTATTCTAGTTGCATTTTTAGAAATTA
AAGGAATTGTACAGATACTCGAGATTCCTGTTGAAAATGTTCGTTTTTTC
CAAGCGGCTCCTGGTGAATACTTTTTATCTACTTTGAAAATTGCCTTTTA
TACAGGTTTTATTTTTAGTATTCCGATTCTGCTTAGCCAATTTATTTTCT
TTTTATTACCTGGTTTAACAAGTAGAGAAAAAAAACTGATAATAGGTTTA
TTATTAAGCTCGGTTTTGTTATTTTTATTTGGG
back to top

Coding sequence (CDS) from alignment at Contig_54:625873..626205-

>mRNA_7090 ID=mRNA_7090|Name=jgi.p|Trimin1|151017|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=333bp|location=Sequence derived from alignment at Contig_54:625873..626205- (Tribonema minus UTEX_B_3156 )
GAACTTTTTTTTGATGAGCATATTGAAGAAATTCGACAAAGGGGTTTTCA
AAGTTTAATTATTATTTTTTCTTTTATTCTAGTTGCATTTTTAGAAATTA
AAGGAATTGTACAGATACTCGAGATTCCTGTTGAAAATGTTCGTTTTTTC
CAAGCGGCTCCTGGTGAATACTTTTTATCTACTTTGAAAATTGCCTTTTA
TACAGGTTTTATTTTTAGTATTCCGATTCTGCTTAGCCAATTTATTTTCT
TTTTATTACCTGGTTTAACAAGTAGAGAAAAAAAACTGATAATAGGTTTA
TTATTAAGCTCGGTTTTGTTATTTTTATTTGGG
back to top