mRNA_7082 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167844
Unique NamemRNA_7082
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|167844 vs. uniprot
Match: A0A835YPV0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPV0_9STRA)

HSP 1 Score: 267 bits (682), Expect = 1.510e-90
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 
Query:    1 MLEKTYLGVIEVGNERVWPIEGILLGPNSRPMVSLGVRCASQTNAINVFFIVDTGAATTHLSKHALEAVLGNGNPVPNSAALCINGNILPVRLSDSTGYNADLCVLGADFFRKAHVTLKVNYVQQTVTLRTA 396
            MLEKTYLGVIEVGNERVWPIEGILLGPNSRPMVSLGVRCASQTNAINVFFIVDTGAATTHLSKHALEAVLGNGNPVPNSAALCINGNILPVRLSDSTGYNADLCVLGADFFRKAHVTLKVNYVQQTVTLRTA
Sbjct:    1 MLEKTYLGVIEVGNERVWPIEGILLGPNSRPMVSLGVRCASQTNAINVFFIVDTGAATTHLSKHALEAVLGNGNPVPNSAALCINGNILPVRLSDSTGYNADLCVLGADFFRKAHVTLKVNYVQQTVTLRTA 132
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BLAST of jgi.p|Trimin1|167844 vs. uniprot
Match: A0A2J7ZNR0_9CHLO (Uncharacterized protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZNR0_9CHLO)

HSP 1 Score: 80.1 bits (196), Expect = 2.340e-16
Identity = 51/131 (38.93%), Postives = 74/131 (56.49%), Query Frame = 1 
Query:    1 MLEKTYLGVIEVGNERVWPIEGILLGPNSRPMVSLGVRCASQTNAINVFFIVDTGAATTHLSKHALEAVLGNGNPVPNSAALCING-NILPVRLSDSTGYNADLCVLGADFFRKAHVTLKVNYVQQTVTLR 390
            +LE  YL   +   E  WP++GIL GP SRP++ L +R   +  A+NVFF+V TGA  T +S     A+      +P +A + + G +   V+L D      D+ VLG DF  +   TLKV+Y +QTVTL+
Sbjct:   37 LLEVRYLS--DSNGEVEWPVKGILWGPASRPLICLPMRGRWRDKAVNVFFLVTTGAPRTEVSASVFTAL--GCEVIPAAATVDLGGVSGTKVQLCDQ-----DISVLGTDFLSRNSCTLKVDYSEQTVTLQ 158
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BLAST of jgi.p|Trimin1|167844 vs. uniprot
Match: A0A6G0UCT1_9BILA (Uncharacterized protein (Fragment) n=1 Tax=Halicephalobus sp. NKZ332 TaxID=2598192 RepID=A0A6G0UCT1_9BILA)

HSP 1 Score: 58.9 bits (141), Expect = 3.890e-8
Identity = 39/115 (33.91%), Postives = 61/115 (53.04%), Query Frame = 1 
Query:   52 WPIEGILLGPNSRPMVSLGVRCASQ--TNAINVFFIVDTGAATTHLSKHALEAVLGNGNPVPNSA-ALCINGNILPVRLSDSTGYNADLCVLGADFFRKAHVTLKVNYVQQTVTL 387
            +P+ GI+ GPN R M+ L V+ A +  +NAINV+F+VDT +  T L+  +LE+  G GN   +      I      +    S G    + +LGAD  RK  +++ V++   T  L
Sbjct:   58 FPVSGIIHGPNIRYMIPLVVQRAGKPNSNAINVWFLVDTSSPFTCLTVKSLESFFGQGNVADDEYYRFAIQDQKSNIECRTSKGNFEFVNLLGADAMRKLKLSIDVDWETDTFKL 172
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BLAST of jgi.p|Trimin1|167844 vs. uniprot
Match: A0A2A2KHQ7_9BILA (Uncharacterized protein n=1 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2KHQ7_9BILA)

HSP 1 Score: 52.4 bits (124), Expect = 1.110e-5
Identity = 34/107 (31.78%), Postives = 57/107 (53.27%), Query Frame = 1 
Query:   52 WPIEGILLGPNSRPMVSLGVRCASQTN--AINVFFIVDTGAATTHLSKHALEAVLGNGNPVPNSAALCINGNILPVRLSDSTGYNADLCVLGADFFRKAHVTLKVNY 366
            +P  G + G N R MV L  + A +TN  A+ ++F+VDTG+  T LS  +LE++ G GN   +  +L I      +    S     ++ +LGAD  +   +++ VN+
Sbjct:   58 FPATGTIHGRNIRYMVPLICQRAGKTNSKAVFIWFLVDTGSPFTCLSTKSLESLFGEGNITHSLYSLAIQDQKSIIECQVSKADFQEVNILGADAMQYLKLSIMVNW 164
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167844 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835YPV0_9STRA1.510e-90100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2J7ZNR0_9CHLO2.340e-1638.93Uncharacterized protein n=1 Tax=Tetrabaena sociali... [more]
A0A6G0UCT1_9BILA3.890e-833.91Uncharacterized protein (Fragment) n=1 Tax=Halicep... [more]
A0A2A2KHQ7_9BILA1.110e-531.78Uncharacterized protein n=1 Tax=Diploscapter pachy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_54contigContig_54:531825..532223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167844|e_gw1.54.7.1
Max annot lvl2759|Eukaryota
EggNOG OGs2D156@1|root,2SGRE@2759|Eukaryota
Evalue1.74e-10
Seed ortholog3067.XP_002959280.1
Hectar predicted targeting categoryother localisation
TranscriptId168166
TrackFilteredModels1
ProteinId167844
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167844gene_7082Tribonema minus UTEX_B_3156 geneContig_54 531825..532223 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7082_1exon_7082_1Tribonema minus UTEX_B_3156 exonContig_54 531825..532223 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7082CDS_7082Tribonema minus UTEX_B_3156 CDSContig_54 531825..532223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167844Trimin1|167844|e_gw1.54.7.1Tribonema minus UTEX_B_3156 polypeptideContig_54 531825..532223 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7082 ID=mRNA_7082|Name=jgi.p|Trimin1|167844|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=399bp|location=Sequence derived from alignment at Contig_54:531825..532223+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGAAAAAACCTACCTTGGTGTTATTGAGGTGGGGAATGAAAGAGT
GTGGCCCATTGAGGGCATACTACTCGGTCCTAACAGTAGGCCAATGGTGA
GTCTTGGTGTGAGGTGTGCTTCACAGACAAATGCTATCAACGTCTTTTTT
ATTGTCGATACTGGTGCTGCCACTACGCACCTCAGCAAACATGCACTTGA
AGCAGTTTTGGGAAATGGCAACCCTGTGCCAAACTCAGCAGCTCTCTGCA
TCAATGGCAACATCTTGCCTGTGCGTCTATCTGACTCTACAGGATATAAC
GCAGACCTTTGCGTTCTCGGGGCAGACTTCTTCAGGAAGGCACATGTCAC
GTTGAAAGTCAACTATGTACAACAGACAGTGACACTGCGCACTGCCTAA
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protein sequence of jgi.p|Trimin1|167844

>Trimin1|167844|e_gw1.54.7.1 ID=Trimin1|167844|e_gw1.54.7.1|Name=jgi.p|Trimin1|167844|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=133bp
MLEKTYLGVIEVGNERVWPIEGILLGPNSRPMVSLGVRCASQTNAINVFF
IVDTGAATTHLSKHALEAVLGNGNPVPNSAALCINGNILPVRLSDSTGYN
ADLCVLGADFFRKAHVTLKVNYVQQTVTLRTA*
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mRNA from alignment at Contig_54:531825..532223+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7082 ID=mRNA_7082|Name=jgi.p|Trimin1|167844|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=399bp|location=Sequence derived from alignment at Contig_54:531825..532223+ (Tribonema minus UTEX_B_3156 )
ATGCTTGAAAAAACCTACCTTGGTGTTATTGAGGTGGGGAATGAAAGAGT
GTGGCCCATTGAGGGCATACTACTCGGTCCTAACAGTAGGCCAATGGTGA
GTCTTGGTGTGAGGTGTGCTTCACAGACAAATGCTATCAACGTCTTTTTT
ATTGTCGATACTGGTGCTGCCACTACGCACCTCAGCAAACATGCACTTGA
AGCAGTTTTGGGAAATGGCAACCCTGTGCCAAACTCAGCAGCTCTCTGCA
TCAATGGCAACATCTTGCCTGTGCGTCTATCTGACTCTACAGGATATAAC
GCAGACCTTTGCGTTCTCGGGGCAGACTTCTTCAGGAAGGCACATGTCAC
GTTGAAAGTCAACTATGTACAACAGACAGTGACACTGCGCACTGCCTAA
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Coding sequence (CDS) from alignment at Contig_54:531825..532223+

>mRNA_7082 ID=mRNA_7082|Name=jgi.p|Trimin1|167844|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=399bp|location=Sequence derived from alignment at Contig_54:531825..532223+ (Tribonema minus UTEX_B_3156 )
ATGCTTGAAAAAACCTACCTTGGTGTTATTGAGGTGGGGAATGAAAGAGT
GTGGCCCATTGAGGGCATACTACTCGGTCCTAACAGTAGGCCAATGGTGA
GTCTTGGTGTGAGGTGTGCTTCACAGACAAATGCTATCAACGTCTTTTTT
ATTGTCGATACTGGTGCTGCCACTACGCACCTCAGCAAACATGCACTTGA
AGCAGTTTTGGGAAATGGCAACCCTGTGCCAAACTCAGCAGCTCTCTGCA
TCAATGGCAACATCTTGCCTGTGCGTCTATCTGACTCTACAGGATATAAC
GCAGACCTTTGCGTTCTCGGGGCAGACTTCTTCAGGAAGGCACATGTCAC
GTTGAAAGTCAACTATGTACAACAGACAGTGACACTGCGCACTGCCTAA
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