mRNA_7000 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154094
Unique NamemRNA_7000
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|154094 vs. uniprot
Match: A0A835YPQ0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPQ0_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.400e-48
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 
Query:    1 VETVQYPGLASFPQKELADRQHKGGVHGTKLWFEVAGGSVLMDSVQRPCSLCENLGATESIITCPAVMTHANM 219
            VETVQYPGLASFPQKELADRQHKGGVHGTKLWFEVAGGSVLMDSVQRPCSLCENLGATESIITCPAVMTHANM
Sbjct:    1 VETVQYPGLASFPQKELADRQHKGGVHGTKLWFEVAGGSVLMDSVQRPCSLCENLGATESIITCPAVMTHANM 73
[Close]
BLAST of jgi.p|Trimin1|154094 vs. uniprot
Match: A0A836CFW8_9STRA (Cystathionine gamma-lyase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFW8_9STRA)

HSP 1 Score: 137 bits (344), Expect = 3.140e-37
Identity = 67/77 (87.01%), Postives = 69/77 (89.61%), Query Frame = 1 
Query:    1 VETVQYPGLASFPQKELADRQHKGGVHGTKLWFEVAGGSV----LMDSVQRPCSLCENLGATESIITCPAVMTHANM 219
            V+TV YPGLASFPQKELADRQHKGGVHGT LWFEVAGG+     LMDSVQRP SLCENLGATESIITCPAVMTHANM
Sbjct:  286 VQTVHYPGLASFPQKELADRQHKGGVHGTMLWFEVAGGTEAGRKLMDSVQRPWSLCENLGATESIITCPAVMTHANM 362
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BLAST of jgi.p|Trimin1|154094 vs. uniprot
Match: R1BBN3_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BBN3_EMIHU)

HSP 1 Score: 120 bits (300), Expect = 7.640e-33
Identity = 58/77 (75.32%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:    1 VETVQYPGLASFPQKELADRQHKGGVHGTKLWFEVAGGSV----LMDSVQRPCSLCENLGATESIITCPAVMTHANM 219
            V+ V YPGLASFPQKELADRQH  G+HG  LWFEV GG+     LMDS+QRP SLCENLGA ESI TCPAVMTHANM
Sbjct:   48 VDVVGYPGLASFPQKELADRQHMNGLHGGMLWFEVKGGTAAGRALMDSIQRPWSLCENLGALESICTCPAVMTHANM 124
[Close]
BLAST of jgi.p|Trimin1|154094 vs. uniprot
Match: R1DRA9_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DRA9_EMIHU)

HSP 1 Score: 121 bits (303), Expect = 1.510e-31
Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:    1 VETVQYPGLASFPQKELADRQHKGGVHGTKLWFEVAGGSV----LMDSVQRPCSLCENLGATESIITCPAVMTHANM 219
            V+ V+YPGLASFPQKELADRQH  G+HG  LWFEV GG+     LMDS+QRP SLCENLGA ESI TCPAVMTHANM
Sbjct:  225 VDVVRYPGLASFPQKELADRQHMNGLHGGMLWFEVKGGTAAGRALMDSIQRPWSLCENLGALESICTCPAVMTHANM 301
[Close]
BLAST of jgi.p|Trimin1|154094 vs. uniprot
Match: A0A7S3WA90_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WA90_EMIHU)

HSP 1 Score: 121 bits (303), Expect = 5.690e-31
Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:    1 VETVQYPGLASFPQKELADRQHKGGVHGTKLWFEVAGGSV----LMDSVQRPCSLCENLGATESIITCPAVMTHANM 219
            V+ V+YPGLASFPQKELADRQH  G+HG  LWFEV GG+     LMDS+QRP SLCENLGA ESI TCPAVMTHANM
Sbjct:  317 VDVVRYPGLASFPQKELADRQHMNGLHGGMLWFEVKGGTAAGRALMDSIQRPWSLCENLGALESICTCPAVMTHANM 393
[Close]
BLAST of jgi.p|Trimin1|154094 vs. uniprot
Match: A0A3R7K4U0_9TRYP (Cystathione gamma lyase n=1 Tax=Trypanosoma conorhini TaxID=83891 RepID=A0A3R7K4U0_9TRYP)

HSP 1 Score: 115 bits (288), Expect = 1.050e-30
Identity = 57/77 (74.03%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:    1 VETVQYPGLASFPQKELADRQHKGGVHGTKLWFEVAGGSV----LMDSVQRPCSLCENLGATESIITCPAVMTHANM 219
            VE V YPGL SFPQK LADRQH    HG  LWFEV GG+     LMD+V RP SLCENLGATESIITCPAVMTHANM
Sbjct:   91 VEKVMYPGLKSFPQKALADRQHANNCHGGMLWFEVRGGTAAGRKLMDTVPRPWSLCENLGATESIITCPAVMTHANM 167
[Close]
BLAST of jgi.p|Trimin1|154094 vs. uniprot
Match: D8LJS6_ECTSI (Cystathionine gamma-lyase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJS6_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 2.340e-30
Identity = 57/77 (74.03%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:    1 VETVQYPGLASFPQKELADRQHKGGVHGTKLWFEVAGGSV----LMDSVQRPCSLCENLGATESIITCPAVMTHANM 219
            V+ V+YPGLASFPQK LAD QH  G+HG+ LWFEV GG+     LM+SVQRP SLCENLGATESI+TCPAVMTHANM
Sbjct:  286 VDIVRYPGLASFPQKALADAQHGNGIHGSMLWFEVKGGTEAGRKLMNSVQRPWSLCENLGATESILTCPAVMTHANM 362
[Close]
BLAST of jgi.p|Trimin1|154094 vs. uniprot
Match: Q38DH3_TRYB2 (Cystathione gamma lyase, putative n=4 Tax=Trypanozoon TaxID=39700 RepID=Q38DH3_TRYB2)

HSP 1 Score: 118 bits (296), Expect = 5.710e-30
Identity = 57/77 (74.03%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:    1 VETVQYPGLASFPQKELADRQHKGGVHGTKLWFEVAGGSV----LMDSVQRPCSLCENLGATESIITCPAVMTHANM 219
            V+ V YPGL SFPQKELADRQH  G HG  LWFE+ GG+     LMD+VQRP SLCENLGATESIITCP+VMTHANM
Sbjct:  329 VDKVSYPGLKSFPQKELADRQHSNGNHGGMLWFELKGGTAAGRRLMDTVQRPWSLCENLGATESIITCPSVMTHANM 405
[Close]
BLAST of jgi.p|Trimin1|154094 vs. uniprot
Match: F0Y3F4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3F4_AURAN)

HSP 1 Score: 117 bits (294), Expect = 6.110e-30
Identity = 57/77 (74.03%), Postives = 61/77 (79.22%), Query Frame = 1 
Query:    1 VETVQYPGLASFPQKELADRQHKGGVHGTKLWFEVAGGSV----LMDSVQRPCSLCENLGATESIITCPAVMTHANM 219
            VETV+YPGLASFPQK LAD+QH  G HG  LWFEV GGS     LMD+  RP SLCENLGA ESIITCP+VMTHANM
Sbjct:  283 VETVRYPGLASFPQKALADKQHNDGFHGGMLWFEVKGGSAAGRKLMDTTPRPWSLCENLGAVESIITCPSVMTHANM 359
[Close]
BLAST of jgi.p|Trimin1|154094 vs. uniprot
Match: UPI0004F4857C (cystathione gamma lyase n=1 Tax=Trypanosoma grayi TaxID=71804 RepID=UPI0004F4857C)

HSP 1 Score: 117 bits (293), Expect = 1.020e-29
Identity = 57/77 (74.03%), Postives = 61/77 (79.22%), Query Frame = 1 
Query:    1 VETVQYPGLASFPQKELADRQHKGGVHGTKLWFEVAGGSV----LMDSVQRPCSLCENLGATESIITCPAVMTHANM 219
            VE V YPGL SFPQK LADRQH   +HG  LWFEV GG+     LMD+VQRP SLCENLGATESIITCP+VMTHANM
Sbjct:  294 VERVMYPGLKSFPQKALADRQHANNLHGGMLWFEVRGGTAAGRRLMDTVQRPWSLCENLGATESIITCPSVMTHANM 370
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154094 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YPQ0_9STRA2.400e-48100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CFW8_9STRA3.140e-3787.01Cystathionine gamma-lyase n=1 Tax=Tribonema minus ... [more]
R1BBN3_EMIHU7.640e-3375.32Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1DRA9_EMIHU1.510e-3175.32Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S3WA90_EMIHU5.690e-3175.32Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A3R7K4U0_9TRYP1.050e-3074.03Cystathione gamma lyase n=1 Tax=Trypanosoma conorh... [more]
D8LJS6_ECTSI2.340e-3074.03Cystathionine gamma-lyase n=2 Tax=Ectocarpus TaxID... [more]
Q38DH3_TRYB25.710e-3074.03Cystathione gamma lyase, putative n=4 Tax=Trypanoz... [more]
F0Y3F4_AURAN6.110e-3074.03Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
UPI0004F4857C1.020e-2974.03cystathione gamma lyase n=1 Tax=Trypanosoma grayi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_54contigContig_54:14235..14891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154094|gw1.54.215.1
Descriptioncystathionine gamma-synthase activity
COG categoryE
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0626@1|root,KOG0053@2759|Eukaryota
Evalue2.48e-32
Seed ortholog2903.EOD38033
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCystathionine gamma-lyase
Ec32 orthologEc-12_003100.1
TranscriptId154416
TrackFilteredModels1
ProteinId154094
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154094gene_7000Tribonema minus UTEX_B_3156 geneContig_54 14235..14891 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7000_1exon_7000_1Tribonema minus UTEX_B_3156 exonContig_54 14235..14354 +
exon_7000_2exon_7000_2Tribonema minus UTEX_B_3156 exonContig_54 14793..14891 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7000CDS_7000Tribonema minus UTEX_B_3156 CDSContig_54 14235..14354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154094Trimin1|154094|gw1.54.215.1Tribonema minus UTEX_B_3156 polypeptideContig_54 14235..14891 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7000 ID=mRNA_7000|Name=jgi.p|Trimin1|154094|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=219bp|location=Sequence derived from alignment at Contig_54:14235..14891+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGGAGACAGTACAATATCCTGGGCTGGCATCATTCCCTCAAAAGGAGCT
TGCCGACAGGCAGCACAAGGGAGGGGTGCACGGCACCAAGCTCTGGTTTG
AAGTCGCAGGAGGGAGCGTGCTCATGGACTCAGTCCAGCGGCCATGTTCT
CTGTGCGAGAACCTCGGCGCAACAGAGAGCATCATCACCTGCCCCGCCGT
CATGACGCATGCTAACATG
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protein sequence of jgi.p|Trimin1|154094

>Trimin1|154094|gw1.54.215.1 ID=Trimin1|154094|gw1.54.215.1|Name=jgi.p|Trimin1|154094|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=73bp
VETVQYPGLASFPQKELADRQHKGGVHGTKLWFEVAGGSVLMDSVQRPCS
LCENLGATESIITCPAVMTHANM
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mRNA from alignment at Contig_54:14235..14891+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7000 ID=mRNA_7000|Name=jgi.p|Trimin1|154094|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=657bp|location=Sequence derived from alignment at Contig_54:14235..14891+ (Tribonema minus UTEX_B_3156 )
GTGGAGACAGTACAATATCCTGGGCTGGCATCATTCCCTCAAAAGGAGCT
TGCCGACAGGCAGCACAAGGGAGGGGTGCACGGCACCAAGCTCTGGTTTG
AAGTCGCAGGAGGGAGCGTGGTGAGTTGCACACAGCAGCACGCCTGCACT
TGTCCAGCGCCTCGTGCATGCTCTCAATGCAACTGCTGCCGTCCTGTGCT
TGTACATTGTCAACTGCGTGGACGTTCACTAGTGCACTGCCGTGGACGTT
CACTTCTAGGGAGAGTATATGAGCAAATTTTGGCATGTGTACCAGGAGCT
ATGCACACTTTTGGATATCATGTGAAGCCTTACTGCACCTAGCCGGCTTT
CATTGGTTTAACCACCTGAGCGGTTTGCCTCAGGCAATGACCTGTGGGTA
GCACATAGAGGCAGAGACTTTGCACCGCATGGAGGTGAACAAGAGAGGAC
CCAAGAGCACAACGTACTGATTGCTTTCATATAATCTGAAACTCGATGAC
ATTGTCTCACGCATCCATGGCTGAGTCATTTCTACTGTGACTGCGCAGGC
GGCGCAAGCTCATGGACTCAGTCCAGCGGCCATGTTCTCTGTGCGAGAAC
CTCGGCGCAACAGAGAGCATCATCACCTGCCCCGCCGTCATGACGCATGC
TAACATG
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Coding sequence (CDS) from alignment at Contig_54:14235..14891+

>mRNA_7000 ID=mRNA_7000|Name=jgi.p|Trimin1|154094|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=219bp|location=Sequence derived from alignment at Contig_54:14235..14891+ (Tribonema minus UTEX_B_3156 )
GTGGAGACAGTACAATATCCTGGGCTGGCATCATTCCCTCAAAAGGAGCT
TGCCGACAGGCAGCACAAGGGAGGGGTGCACGGCACCAAGCTCTGGTTTG
AAGTCGCAGGAGGGAGCGTGCTCATGGACTCAGTCCAGCGGCCATGTTCT
CTGTGCGAGAACCTCGGCGCAACAGAGAGCATCATCACCTGCCCCGCCGT
CATGACGCATGCTAACATG
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