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Homology
BLAST of jgi.p|Trimin1|163812 vs. uniprot
Match: A0A835YXX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX7_9STRA) HSP 1 Score: 191 bits (485), Expect = 4.570e-50 Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 1
Query: 808 SCELRRLXXXXXXXXXXXXXXLSLCSQLEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSADRLLPSFRCLAMLTSLDVQRIDTGKFPEKCVREMAALRTLDLRHWQAAALPEAVCDLRRLTHLDLGNSLQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDECGVKGVPATFVHAPGTGHWERIYAAYATVARKRS 1698
SCELRRLXXXXXXXXXXXXXXLSLCSQLEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSADRLLPSFRCLAMLTSLDVQRIDTGKFPEKCVREMAALRTLDLRHWQAAALPEAVCDLRRLTHLDLGNSLQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDECGVKGVPATFVHAPGTGHWERIYAAYATVARKRS
Sbjct: 270 SCELRRLXXXXXXXXXXXXXXLSLCSQLEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSADRLLPSFRCLAMLTSLDVQRIDTGKFPEKCVREMAALRTLDLRHWQAAALPEAVCDLRRLTHLDLGNSLQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDECGVKGVPATFVHAPGTGHWERIYAAYATVARKRS 566
BLAST of jgi.p|Trimin1|163812 vs. uniprot
Match: A0A835Z2F0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2F0_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 1.610e-10 Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1
Query: 1591 DECGVKGVPATFVHAPGTGHWERIYAAYATVARKRS 1698
DECGVKGVPATFVHAPGT +WERIYAAYATVARKRS
Sbjct: 570 DECGVKGVPATFVHAPGTRYWERIYAAYATVARKRS 605
BLAST of jgi.p|Trimin1|163812 vs. uniprot
Match: A0A835YRQ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRQ2_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 7.580e-6 Identity = 31/68 (45.59%), Postives = 38/68 (55.88%), Query Frame = 1
Query: 1024 LSADRLLPSFRCLAMLTSLDVQRIDTGKFPEKCVREMAALRTLDLRHWQAAALPEAVCDLRRLTHLDL 1227
L A RLLPSFRC A+LTSLD++ D +FP C+R++ ALRT VC L L L L
Sbjct: 55 LDARRLLPSFRCFAVLTSLDLRGTDFTRFPAACIRDLTALRTXXXXXXXXXXXXXGVCALAELXRLSL 122
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
ProteomeId | Trimin1|163812|e_gw1.27.192.1 |
Hectar predicted targeting category | other localisation |
TranscriptId | 164134 |
Track | FilteredModels1 |
ProteinId | 163812 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6989 ID=mRNA_6989|Name=jgi.p|Trimin1|163812|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1701bp|location=Sequence derived from alignment at Contig_27:1017334..1021344+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
TGCCGGGAGCTGACGCGCCTACCAGATGGCATCGGCGACCTTACAGCGCT GGCGACACTGGATCTGAGCGACTGCTCGGCACTCGACGTTTTACCTGAGA CCGTCGGCGGCTTGTGCGCGCTGACGGCGCTCAATCTGCATGAGTGCTGC AGCCTCACCTGCCTGCCGGACAGCCTCGGCAGCCTCGCTGCACTGACGGC CCTCAAGTTGAGTTCATGCGACACGCTGACGAGCTTGCCCCTCAGCATCG GCAAACTGCGTGCGCTGACGCAGCTGACGCTCGGCGGCTGCCGTGCGCTC GTGTCCCTGCCGGAGTCCATCGGCGACCTGGCGGCTCTGACGGCCCTCGA TCTGCCCCAATGCCGCGCGCTCGCCGCCCTGCCGGAGTCCATCGGCGGCC TGGCGGCTCTGATGGCCCTCGATCTGAGCGGCTGCCGAGCGCTGACGCGT CTGCCGGAAATCACCAGCCTGCCTGAGACCATCGGCGAAGTGACTGTGCT GACGGCGCTCTCCGTGCAAAGCTGCGGTCAGCTCAGTGCCCTGCCGGACA GCATCAGCGGCCTGACGCGGCTCACAGCACTGTCGCTGCACGAGTGCCAG GAGCTGAGGCACCTGAAAGATGGCATCGGCGACCTCACAGCGCTGACGAC ACTGGACCTGAGCTGCTGCTTCGCACTCGATACTATACCTGAGACCATCG GCGGCTTGTGCGCACTCACGACGCTCGACCTGCAGAAGTGCTACAGCCTC ACCTGCTTGCCGGACAGCCTCGGCAGCCTCGCTGCACTGGCGGCCCTCAA GTTGAGGTCATGCGAGTTGCGGCGTCTGCCTGACAGCATTGGCAATCTGT CCACGCTAACGGAGCTCGACTTGAGCTTATGCAGCCAGCTCGAAGCACTG CCAGACACCATCGGTCAACTAGCTGCTCTCACAGAGCTCGGCATCGCGGC GTGCAGCTCCCTGCCGCGCCTGCCAGCTTCCGTTGCGGCGCTCACGCAGT TGCAGTCGCTCGGGATGTCAGGGTTAAGTGCCGACAGGCTGCTCCCCAGT TTCCGCTGCCTCGCAATGCTGACGTCCCTGGATGTGCAACGCATTGACAC CGGGAAATTTCCGGAGAAGTGCGTCCGGGAGATGGCGGCGCTGCGGACGC TCGATCTGAGACATTGGCAGGCCGCGGCGCTGCCAGAGGCCGTCTGTGAC CTGCGAAGGCTGACGCACCTCGATCTGGGCAATTCACTGCAGCTTGCAGC GCTGCCAGAGTCCTTCGGCAGGCTGCACACGCTGACAGCGCTCAACATGT CCGGCTGCCCCGCGCTGACGAGCCTGCCCGGCGACATCGGCCGCCTGCGC GCGCTGATGCGGCTGACGCTCAGCGAGTGCCGTGCGCTCGTGTCCCTGCC GGAGTCCATCGACGGGATGCGGGCGTTGACGGCCCTTGACATGCGCGCCT GCCGCGCGCTCGTCGCCCTGCCGGAGTCCATCGGCGGCCTGGCAGCTATG AGGGCCCTCGACCTGCGCGGCTGCCGAGCGCTGACGCGACTGCCGCAGCG CATCGTCGAGCTGACGGCGCTGCAGCGCGTCGACCTCCGCGACGAGTGCG GGGTGAAGGGGGTGCCAGCTACCTTCGTGCACGCGCCGGGGACCGGGCAT TGGGAGCGCATCTACGCTGCGTATGCGACGGTGGCGCGCAAGCGCAGCTG A back to topprotein sequence of jgi.p|Trimin1|163812 >Trimin1|163812|e_gw1.27.192.1 ID=Trimin1|163812|e_gw1.27.192.1|Name=jgi.p|Trimin1|163812|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=567bp
CRELTRLPDGIGDLTALATLDLSDCSALDVLPETVGGLCALTALNLHECC SLTCLPDSLGSLAALTALKLSSCDTLTSLPLSIGKLRALTQLTLGGCRAL VSLPESIGDLAALTALDLPQCRALAALPESIGGLAALMALDLSGCRALTR LPEITSLPETIGEVTVLTALSVQSCGQLSALPDSISGLTRLTALSLHECQ ELRHLKDGIGDLTALTTLDLSCCFALDTIPETIGGLCALTTLDLQKCYSL TCLPDSLGSLAALAALKLRSCELRRLPDSIGNLSTLTELDLSLCSQLEAL PDTIGQLAALTELGIAACSSLPRLPASVAALTQLQSLGMSGLSADRLLPS FRCLAMLTSLDVQRIDTGKFPEKCVREMAALRTLDLRHWQAAALPEAVCD LRRLTHLDLGNSLQLAALPESFGRLHTLTALNMSGCPALTSLPGDIGRLR ALMRLTLSECRALVSLPESIDGMRALTALDMRACRALVALPESIGGLAAM RALDLRGCRALTRLPQRIVELTALQRVDLRDECGVKGVPATFVHAPGTGH WERIYAAYATVARKRS* back to topmRNA from alignment at Contig_27:1017334..1021344+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6989 ID=mRNA_6989|Name=jgi.p|Trimin1|163812|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4011bp|location=Sequence derived from alignment at Contig_27:1017334..1021344+ (Tribonema minus UTEX_B_3156 ) TGCCGGGAGCTGACGCGCCTACCAGATGGCATCGGCGACCTTACAGCGCT
GGCGACACTGGATCTGAGCGACTGCTCGGCACTCGACGTTTTACCTGAGA
CCGTCGGCGGCTTGTGCGCGCTGACGGCGCTCAATCTGCATGAGTGCTGC
AGCCTCACCTGCCTGCCGGACAGCCTCGGCAGCCTCGCTGCACTGACGGC
CCTCAAGTTGAGTTCATGCGAGTTCCGGCATCTGCCTGACAGCATAGGCA
ATCTGTCAGCGCTGACGACGCTCGACTTGAGCTCATGCCGGGAGCTTGAA
GCACTGCCGGACACCATGGGTCAACTAACTGCTCTGGCAGAGCTCAACCT
CGCGGCGTGCAGCTCCCTGCAGAGCCTGCCAGCTTCCATTGCGGCGCTGA
CGCAGTTGCAGTCGCTCGGAATGTCAGGCTTACGTGCCGACGGGCTGCTC
CCCCGTTTCCGCTGCTTCGCAACGCTGACGTCCCTGGATTTGCACTGCAC
CGATGGTGTGCAAATGGCGTTCGTGGAGGAGTGCATCCGCGAGATAGCGG
CGCTGCGGACGCTTGGTCTGAGATACTGGCAGGCCACGGCACTGCCACAG
GCCGTCTGTGCGCTGTCGACGCTGACGTACCTCGATCTGGGCTCTTGGGA
GCAGCTTACGACACCGCCAGAGTCCATCGGCGAGCTGCGTGAGCTGACTG
CGCTCGACCTGTCCTGTTGCAGCACGCTGACGAGCTTGCCCCTCAGCATC
GGCAAACTGCGTGCGCTGACGCAGCTGACGCTCGGCGGCTGCCGTGCGCT
CGTGTCCCTGCCGGAGTCCATCGGCGACCTGGCGGCTCTGACGGCCCTCG
ATCTGCCCCAATGCCGCGCGCTCGCCGCCCTGCCGGAGTCCATCGGCGGC
CTGGCGGCTCTGATGGCCCTCGATCTGAGCGGCTGCCGAGCGCTGACGCG
TCTGCCGGAGTGCACTGCGGCGCTGACGGCGCTGCAGCGGTTGGACCTCA
GCGGCGGCTGCGGAGTGCAGGAGGTGCCAACTGCCTTCGTGCACGCACCA
GGGAGCAGGCATCAGGAAGCGATCTACGCTGCGTGTCCCATATCGGCACG
CAACCTCAGCTGAGTGCGTAGATAGAAGTGGCAGAGGCGTGTCGTGTAGT
GCGCTAGCTTTGACTGTCATGTGATGATGCGGACTGCGACTGATTGCGAT
AAGCCTCACGCCGCAGGCGCACGCACTGTCGCCGCTACCAAGTCATTGGA
ACCTGACCTGATGAACACATGCTCTCTTGTGTCATGTCAACTGCTGTGAC
GTTGATCTGCGTGTCTGGACTGCATATGTGTCGTGTATGCTGGTAGATTG
CAATGGCAGTGTACTGCTGCCGGTGCTGCTGCTGGTGCTGGTAAGTCGCC
CTGCAAATCCATGTGGGAACCGCTATAATGCAGCAATGCAGCAATGCCAC
ACGTGCTTGCTTTTGGGATTCATCACACATGTGCTGATCAGCTGCGCCAT
CAGAGACACTCGCGCGCAAGCACGTCTTGTACCTCCAGGTGGGAGGAACC
ACTGCATTTCAAAAAGCGTTTTGCGCCATTGTGGTGGTCACTAGCGATCT
CGTGCCGATGATCACTTCACACAGCGTCAGGCAGTGCAGCCATATATGTA
TGAGATCATAAAGCAGGCCTGTCAGAGAGAGTCATTGCAGCTGTGGTGAG
AATTTGGAGGCGGTGTTCATTCGGATCCGACCTGTGATGACAATTTGATC
ACAAATCGACTACTGGCGTCAGTTGCGCAACCCTTCATGATGCTGCAGGC
CTGTGTGCCACGTCTTTTGTGTCACCTTTCTCCACCACAGGCGCAAGTGA
GCAACTGCACTAAATACGGTCCTGCGCCGATGGGCTACGGGCAAGATAGT
CAGCAATATAATGTTGTTGCCAGATGACTGGTGCTGCGAGGTGAAGGCAT
AAGGATCTGTTTTCGCCTCCCTCAACTTCAACTTCAGGCCGTTCACAGTT
GAAGTTCATGGGAAAACGGTTGAGGTTGAGAGAGGGAGGAGTCACGAGCA
CCATGAGCGACGGAAAAAATGCTGGCACAGTCACGGAGGAGGCCTCATCG
CTGCAGAAGCGCCACAAGGATGCAGGCGGTCACGAGGACGGAAGCCCAGA
GGCAATCACCCAAGTGTTGTCGGTGATGGCCCACATGCGATTGCTGCCCA
GGACCGCCTGGGATCTGAGCAGGGCTTTGCACAGGACAGTGAGACCAGTA
GTTCACTTGAATCTTGGGACGCCAGACTGGTTCTGCTCTCCGGCGCATTT
ACTGCCTACTGCGGCTCGGGTCTTTGGCAGCAAAACGGTTGTCAACCTCG
GGCTGTACGGGGATTTCAAGGTGGATCCGCTGCTTGCCATCGCAGGAAGG
CTGGTCACATCTGCTGTCAACAGTGACGCTACAGACGACTTCAATGTCTT
CTTCAGGGACATCAAGGTTATGACCTTGTCGAAGCCAGCTGCGGCTCTCG
CACGCAAACCACGTTCGCTACAGGAACTGCACCTCGACTCCTGCGACCCC
AACATTGTCGATAATCTGCTGCTCATGCTGGCAAACACGGCACCTCCAGC
CCTTCAGTCCGATGCACCACCGCTGGTAGTCACCCGCCCGCCGGAGCACA
TCAGCGGACCAGCACTGACATCACTCAGCGTGTCAAACTGCTACGGCATC
GCCAGAATTCCGGACAGCATCGGCGAGCTAACTGCACTGACATCGCTCAG
CTTCCTGGGGTGCGGTAGAATCACCAGCCTGCCTGAGACCATCGGCGAAG
TGACTGTGCTGACGGCGCTCTCCGTGCAAAGCTGCGGTCAGCTCAGTGCC
CTGCCGGACAGCATCAGCGGCCTGACGCGGCTCACAGCACTGTCGCTGCA
CGAGTGCCAGGAGCTGAGGCACCTGAAAGATGGCATCGGCGACCTCACAG
CGCTGACGACACTGGACCTGAGCTGCTGCTTCGCACTCGATACTATACCT
GAGACCATCGGCGGCTTGTGCGCACTCACGACGCTCGACCTGCAGAAGTG
CTACAGCCTCACCTGCTTGCCGGACAGCCTCGGCAGCCTCGCTGCACTGG
CGGCCCTCAAGTTGAGGTCATGCGAGTTGCGGCGTCTGCCTGACAGCATT
GGCAATCTGTCCACGCTAACGGAGCTCGACTTGAGCTTATGCAGCCAGCT
CGAAGCACTGCCAGACACCATCGGTCAACTAGCTGCTCTCACAGAGCTCG
GCATCGCGGCGTGCAGCTCCCTGCCGCGCCTGCCAGCTTCCGTTGCGGCG
CTCACGCAGTTGCAGTCGCTCGGGATGTCAGGGTTAAGTGCCGACAGGCT
GCTCCCCAGTTTCCGCTGCCTCGCAATGCTGACGTCCCTGGATGTGCAAC
GCATTGACACCGGGAAATTTCCGGAGAAGTGCGTCCGGGAGATGGCGGCG
CTGCGGACGCTCGATCTGAGACATTGGCAGGCCGCGGCGCTGCCAGAGGC
CGTCTGTGACCTGCGAAGGCTGACGCACCTCGATCTGGGCAATTCACTGC
AGCTTGCAGCGCTGCCAGAGTCCTTCGGCAGGCTGCACACGCTGACAGCG
CTCAACATGTCCGGCTGCCCCGCGCTGACGAGCCTGCCCGGCGACATCGG
CCGCCTGCGCGCGCTGATGCGGCTGACGCTCAGCGAGTGCCGTGCGCTCG
TGTCCCTGCCGGAGTCCATCGACGGGATGCGGGCGTTGACGGCCCTTGAC
ATGCGCGCCTGCCGCGCGCTCGTCGCCCTGCCGGAGTCCATCGGCGGCCT
GGCAGCTATGAGGGCCCTCGACCTGCGCGGCTGCCGAGCGCTGACGCGAC
TGCCGCAGCGCATCGTCGAGCTGACGGCGCTGCAGCGCGTCGACCTCCGC
GACGAGTGCGGGGTGAAGGGGGTGCCAGCTACCTTCGTGCACGCGCCGGG
GACCGGGCATTGGGAGCGCATCTACGCTGCGTATGCGACGGTGGCGCGCA
AGCGCAGCTGA back to topCoding sequence (CDS) from alignment at Contig_27:1017334..1021344+ >mRNA_6989 ID=mRNA_6989|Name=jgi.p|Trimin1|163812|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1701bp|location=Sequence derived from alignment at Contig_27:1017334..1021344+ (Tribonema minus UTEX_B_3156 ) TGCCGGGAGCTGACGCGCCTACCAGATGGCATCGGCGACCTTACAGCGCT GGCGACACTGGATCTGAGCGACTGCTCGGCACTCGACGTTTTACCTGAGA CCGTCGGCGGCTTGTGCGCGCTGACGGCGCTCAATCTGCATGAGTGCTGC AGCCTCACCTGCCTGCCGGACAGCCTCGGCAGCCTCGCTGCACTGACGGC CCTCAAGTTGAGTTCATGCGACACGCTGACGAGCTTGCCCCTCAGCATCG GCAAACTGCGTGCGCTGACGCAGCTGACGCTCGGCGGCTGCCGTGCGCTC GTGTCCCTGCCGGAGTCCATCGGCGACCTGGCGGCTCTGACGGCCCTCGA TCTGCCCCAATGCCGCGCGCTCGCCGCCCTGCCGGAGTCCATCGGCGGCC TGGCGGCTCTGATGGCCCTCGATCTGAGCGGCTGCCGAGCGCTGACGCGT CTGCCGGAAATCACCAGCCTGCCTGAGACCATCGGCGAAGTGACTGTGCT GACGGCGCTCTCCGTGCAAAGCTGCGGTCAGCTCAGTGCCCTGCCGGACA GCATCAGCGGCCTGACGCGGCTCACAGCACTGTCGCTGCACGAGTGCCAG GAGCTGAGGCACCTGAAAGATGGCATCGGCGACCTCACAGCGCTGACGAC ACTGGACCTGAGCTGCTGCTTCGCACTCGATACTATACCTGAGACCATCG GCGGCTTGTGCGCACTCACGACGCTCGACCTGCAGAAGTGCTACAGCCTC ACCTGCTTGCCGGACAGCCTCGGCAGCCTCGCTGCACTGGCGGCCCTCAA GTTGAGGTCATGCGAGTTGCGGCGTCTGCCTGACAGCATTGGCAATCTGT CCACGCTAACGGAGCTCGACTTGAGCTTATGCAGCCAGCTCGAAGCACTG CCAGACACCATCGGTCAACTAGCTGCTCTCACAGAGCTCGGCATCGCGGC GTGCAGCTCCCTGCCGCGCCTGCCAGCTTCCGTTGCGGCGCTCACGCAGT TGCAGTCGCTCGGGATGTCAGGGTTAAGTGCCGACAGGCTGCTCCCCAGT TTCCGCTGCCTCGCAATGCTGACGTCCCTGGATGTGCAACGCATTGACAC CGGGAAATTTCCGGAGAAGTGCGTCCGGGAGATGGCGGCGCTGCGGACGC TCGATCTGAGACATTGGCAGGCCGCGGCGCTGCCAGAGGCCGTCTGTGAC CTGCGAAGGCTGACGCACCTCGATCTGGGCAATTCACTGCAGCTTGCAGC GCTGCCAGAGTCCTTCGGCAGGCTGCACACGCTGACAGCGCTCAACATGT CCGGCTGCCCCGCGCTGACGAGCCTGCCCGGCGACATCGGCCGCCTGCGC GCGCTGATGCGGCTGACGCTCAGCGAGTGCCGTGCGCTCGTGTCCCTGCC GGAGTCCATCGACGGGATGCGGGCGTTGACGGCCCTTGACATGCGCGCCT GCCGCGCGCTCGTCGCCCTGCCGGAGTCCATCGGCGGCCTGGCAGCTATG AGGGCCCTCGACCTGCGCGGCTGCCGAGCGCTGACGCGACTGCCGCAGCG CATCGTCGAGCTGACGGCGCTGCAGCGCGTCGACCTCCGCGACGAGTGCG GGGTGAAGGGGGTGCCAGCTACCTTCGTGCACGCGCCGGGGACCGGGCAT TGGGAGCGCATCTACGCTGCGTATGCGACGGTGGCGCGCAAGCGCAGCTG A back to top
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