mRNA_6979 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|146327
Unique NamemRNA_6979
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|146327 vs. uniprot
Match: A0A835Z180_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z180_9STRA)

HSP 1 Score: 542 bits (1397), Expect = 3.490e-195
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 1
Query:    1 VHRGNWVLGSQIGRGAFGQVHMGHNQVTGELIAVRRLCLVSDEKRAATSQLINEIQLMQRCHHPNIVGYLGAELHTSWVCILQEWVAGGSITSMLASFGAFPQPVTHCYARQLLQGVMYLHSCGIVHRDLKGDNVLISASGVVKIADFGTSKQLFDLQDNSAQLQGTPYFMAPEVLQRQPHGMAVDIWAFACVVLQMLTGDMPWSLALGTQKTVTQLLQIMQSERIPPLPPDLDLSLRMALVACFSWDSVGRPTAKSLLHSGYFS 795
            VHRGNWVLGSQIGRGAFGQVHMGHNQVTGELIAVRRLCLVSDEKRAATSQLINEIQLMQRCHHPNIVGYLGAELHTSWVCILQEWVAGGSITSMLASFGAFPQPVTHCYARQLLQGVMYLHSCGIVHRDLKGDNVLISASGVVKIADFGTSKQLFDLQDNSAQLQGTPYFMAPEVLQRQPHGMAVDIWAFACVVLQMLTGDMPWSLALGTQKTVTQLLQIMQSERIPPLPPDLDLSLRMALVACFSWDSVGRPTAKSLLHSGYFS
Sbjct:    1 VHRGNWVLGSQIGRGAFGQVHMGHNQVTGELIAVRRLCLVSDEKRAATSQLINEIQLMQRCHHPNIVGYLGAELHTSWVCILQEWVAGGSITSMLASFGAFPQPVTHCYARQLLQGVMYLHSCGIVHRDLKGDNVLISASGVVKIADFGTSKQLFDLQDNSAQLQGTPYFMAPEVLQRQPHGMAVDIWAFACVVLQMLTGDMPWSLALGTQKTVTQLLQIMQSERIPPLPPDLDLSLRMALVACFSWDSVGRPTAKSLLHSGYFS 265          
BLAST of jgi.p|Trimin1|146327 vs. uniprot
Match: A0A836CHV3_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHV3_9STRA)

HSP 1 Score: 384 bits (985), Expect = 2.560e-132
Identity = 190/271 (70.11%), Postives = 208/271 (76.75%), Query Frame = 1
Query:    1 VHRGNWVLGSQIGRGAFGQVHMGHNQVTGELIAVRRLCLVSDEKRAATSQLINEIQLMQRCHHPNIVGYLGAELHTSWVCILQEWVAGGSITSMLASFGAFPQPVTHCYARQLLQGVMYLHSCGIVHRDLKG------DNVLISASGVVKIADFGTSKQLFDLQDNSAQLQGTPYFMAPEVLQRQPHGMAVDIWAFACVVLQMLTGDMPWSLALGTQKTVTQLLQIMQSERIPPLPPDLDLSLRMALVACFSWDSVGRPTAKSLLHSGYFS 795
            V RG W LG  I RGAFGQVHMG NQ+TGELIAV+  CL S       +QL NE+ LMQRC HPNIVGYLGAELH SWVCILQEWV GGSI S+L +FG F + VT CYA Q+LQG+MYLHSCGIVH DLKG      DNVL+S SGVVKIADFGTS+Q+FDLQD   +L GTPYFMAPEVLQRQ HGMAVD+WAFACV+LQMLTGD PW   LGT K V  LLQ MQ+ R PPLPPD+  S+R  LV CFSWD  GRPTAK LL S YFS
Sbjct:    1 VQRGKWKLGPCIVRGAFGQVHMGLNQMTGELIAVKA-CLTSFGNHNTANQLTNEVLLMQRCRHPNIVGYLGAELHGSWVCILQEWVPGGSICSILQNFGPFTERVTRCYAHQILQGIMYLHSCGIVHHDLKGEKQIAGDNVLVSTSGVVKIADFGTSEQVFDLQDRHTKLMGTPYFMAPEVLQRQRHGMAVDVWAFACVILQMLTGDAPWRSLLGTNKVVLALLQTMQTHRTPPLPPDISPSMRALLVECFSWDPAGRPTAKDLLQSSYFS 270          
BLAST of jgi.p|Trimin1|146327 vs. uniprot
Match: A0A835YJU3_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJU3_9STRA)

HSP 1 Score: 360 bits (924), Expect = 3.210e-123
Identity = 172/258 (66.67%), Postives = 211/258 (81.78%), Query Frame = 1
Query:   16 WVLGSQIGRGAFGQVHMGHNQVTGELIAVRRLCLVSDEKRAATSQLINEIQLMQRCHHPNIVGYLGAELHTSWVCILQEWVAGGSITSMLASFGAFPQPVTHCYARQLLQGVMYLHSCGIVHRDLKGDNVLISASGVVKIADFGTSKQLFDLQDNSAQLQGTPYFMAPEVLQRQPHGMAVDIWAFACVVLQMLTGDMPWSLALGTQKTVTQLLQIMQSERIPPLPPDLDLSLRMALVACFSWDSVGRPTAKSLLHSGY 789
            W LG ++GRGAFGQVHMG +QVTGE IAV+  CL+S  + +  S+L NEI+LMQRC H NIV YLG EL  + V I+QEWV GGSITS+L++FGAF QPVT CYARQ+L G++YLHSCG VHRDLKGDNVL+SA G+VKIADFGTS+QL+DLQD+   LQGT +FMAPEVLQRQP GMAVD+WAFAC+VLQM TG+MPW+  LG +K + +LL++MQ+ R+PPLP DL+ ++R AL ACFSW+   RPTAK L+H GY
Sbjct:    3 WALGPELGRGAFGQVHMGLDQVTGEFIAVKA-CLISGGRSSTASKLSNEIRLMQRCRHVNIVQYLGTELSPAGVYIVQEWVPGGSITSILSNFGAFTQPVTQCYARQILHGLVYLHSCGTVHRDLKGDNVLVSAGGIVKIADFGTSEQLYDLQDDRGHLQGTLHFMAPEVLQRQPQGMAVDVWAFACLVLQMHTGNMPWASELGARKRLPRLLRLMQAHRMPPLPNDLNPTMRAALTACFSWNPAERPTAKHLVHHGY 259          
BLAST of jgi.p|Trimin1|146327 vs. uniprot
Match: A0A835YKW2_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKW2_9STRA)

HSP 1 Score: 251 bits (640), Expect = 2.110e-78
Identity = 134/268 (50.00%), Postives = 174/268 (64.93%), Query Frame = 1
Query:   16 WVLGSQIGRGAFGQVHMGHNQVTGELIAVR----RLCLVSDEKR------AATSQLINEIQLMQRCHHPNIVGYLGAELHTSWVCILQEWVAGGSITSMLASFGAFPQPVTHCYARQLLQGVMYLHSCGIVHRDLKGDNVLISASGVVKIADFGTSKQLFDLQDNSAQLQGTPYFMAPEVLQRQPHGMAVDIWAFACVVLQMLTGDMPWSLALGTQKTVTQLLQIMQS--ERIPPLPPDLDLSLRMALVACFSWDSVGRPTAKSLLHS 783
            W LG  IGRG+FG+VHMG NQ+TGEL+A++     LC+    ++      A    L  E+ +M +  H N V YLGAE     V I Q+W+ GGSI+++LA FG   + VT  YARQ L+G+ YLH+ GIVHRDLKGDN+LI   G +KIADFGTS ++ D    +A++ GTPYFMAPE+L R  HG+ VDIW FAC VLQMLT   PW     T  ++  LL +MQ+  +R+PPLPPD+   +R  LV CF WD   RPT++ LL S
Sbjct:    2 WCLGPTIGRGSFGEVHMGLNQITGELMAIKVCALPLCVAHSLRQPGAHACAKQHSLPREVFIMSQLQHRNTVRYLGAESDDDKVYIFQQWIPGGSISALLARFGPLSEHVTRLYARQALRGLAYLHANGIVHRDLKGDNLLIDGEGTIKIADFGTSARVPD-GAAAAEMLGTPYFMAPEMLLRCDHGLPVDIWGFACTVLQMLTNRRPWHSCRVT--SLPALLSVMQAALQRMPPLPPDMSPVMRAVLVNCFRWDPAERPTSRQLLRS 266          
BLAST of jgi.p|Trimin1|146327 vs. uniprot
Match: A0A835YLS7_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS7_9STRA)

HSP 1 Score: 242 bits (617), Expect = 1.860e-76
Identity = 131/270 (48.52%), Postives = 169/270 (62.59%), Query Frame = 1
Query:    1 VHRGNWVLGSQIGRGAFGQVHMGHNQVTGELIAVRRLCLVSDEKRAATSQLINEIQLMQRCHHPNIVGYLGAELHTSW--VCILQEWVAGGSITSMLASFGAFPQPVTHCYARQLLQGVMYLHSCGIVHRDLKGDNVLISASGVVKIADFGTSKQLFDLQDNSAQ--LQGTPYFMAPEVLQRQPHGMAVDIWAFACVVLQMLTGDMPW-SLALGTQKTVTQLLQIMQSERIPPLPPDLDLSLRMALVACFSWDSVGRPTAKSLLHSGYFS 795
            V  G W LG++I RG+FG V+MG N+ TG L+AV+ L L   ++     +L  E+ LM+   HPNIV YLGAE+      +CI QEWV GGS++S+L  FG F + +T  Y RQ LQG+ YLHS  +VHRD+ G N+L+   GVVK+ADFG S QL D   + A   L+GTPYFMAPEVLQR  HGM VD+W+F   VLQM++G+ PW S  + T   + Q L + +  + PPLP DL   LR  L  CF WD   RPTA  L    + S
Sbjct:    2 VQPGKWKLGNRIARGSFGVVYMGLNEATGALMAVKVLSLRGSDRDL--HELHREMALMRAFSHPNIVSYLGAEIREEHDQLCIFQEWVPGGSVSSLLQRFGPFSEDMTRGYTRQALQGLAYLHSHHVVHRDINGSNILVDDHGVVKLADFGASLQLSDAAGSRADGALKGTPYFMAPEVLQRSAHGMPVDVWSFGGAVLQMVSGEPPWFSYGVSTPYALLQAL-LERRGQTPPLPADLSAGLRAFLERCFRWDPAERPTAAELALDPFLS 268          
BLAST of jgi.p|Trimin1|146327 vs. uniprot
Match: A0A835YTJ7_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTJ7_9STRA)

HSP 1 Score: 237 bits (605), Expect = 2.080e-74
Identity = 126/261 (48.28%), Postives = 166/261 (63.60%), Query Frame = 1
Query:   16 WVLGSQIGRGAFGQVHMGHNQVTGELIAVRRLCLVSDEKRAATSQLINEIQLMQRCHHPNIVGYLGAELHTSWVCILQEWVAGGSITSMLASFGAFPQPVTHCYARQLLQGVMYLHSCGIVHRDLKGDNVLISASGVVKIADFGTSKQLFDLQDNSAQLQGTPYFMAPEVLQRQPHGMAVDIWAFACVVLQMLTGDMPW-SLALGTQKTVTQLLQIMQSERIPPLPPDLDLSLRMALVACFSWDSVGRPTAKSLLHSGYFS 795
            W LG +IG G+FG VH G +QVTG+LIAV               Q++ E+ +M+R  H NIV YLGAELH S + I ++++AGGS+ ++L +FGA    V   Y  Q+L+G+ YLHSCG+VHRDLK  NVLI   G  +I+DFGTS    +L  +S  + GTP FMAPEVLQR   GM VDIW F C ++QM+TG  PW  L L T   +   L   +  R+PPLPP LD +L + LV+CF W+   RPT++ LL S +FS
Sbjct:    2 WRLGPRIGAGSFGVVHQGLDQVTGQLIAV-------SSHFNGQRQVLQEVAMMKRLRHRNIVCYLGAELHGSQLFIHEQFIAGGSLEAVLRTFGAITVSVVRRYTLQILEGISYLHSCGVVHRDLKAANVLIDTCGTPRISDFGTS--CINLDQSSTSMAGTPQFMAPEVLQRLDCGMPVDIWGFGCTLIQMITGHSPWHGLKLRTLPALLAALNRAEG-RMPPLPPGLDPALHVLLVSCFQWEPAQRPTSQQLLLSNFFS 252          
BLAST of jgi.p|Trimin1|146327 vs. uniprot
Match: A0A835YLD7_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLD7_9STRA)

HSP 1 Score: 238 bits (606), Expect = 1.060e-73
Identity = 128/262 (48.85%), Postives = 169/262 (64.50%), Query Frame = 1
Query:    1 VHRGNWVLGSQIGRGAFGQVHMGHNQVTGELIAVRRLCLVSDEKRAATSQLINEIQLMQRCHHPNIVGYLGAELHTS--WVCILQEWVAGGSITSMLASFGAFPQPVTHCYARQLLQGVMYLHSCGIVHRDLKGDNVLISASGVVKIADFGTSKQLFDLQD-NSAQLQGTPYFMAPEVLQRQPHGMAVDIWAFACVVLQMLTGDMPW-SLALGTQKTVTQLLQIMQSERIPPLPPDLDLSLRMALVACFSWDSVGRPTAKSL 774
            V  G W LG++I RG+FG V+MG N+VTGEL+AV+ L L   E+     +L  E+ LM++  HPNIV YLGAE+      +CI QEWV GGS++S+L  FG F + +T  Y RQ L+G+ YLH   +VHRD+KG N+L+   G VK+ADFG S  + D  D     L+GTPYFMAPEVLQR+PHG  VDIW+F   +LQM+TG+ PW S  + T   + Q + + +  + PPLP +L  SL   L  CFSWD   RP+A  L
Sbjct:   86 VRPGKWKLGNRIARGSFGVVYMGLNEVTGELMAVKVLSLHGSERDMR--ELHREMALMRQFSHPNIVSYLGAEIREEDGQLCIFQEWVPGGSVSSLLRRFGPFSEDMTRRYTRQALRGLTYLHQHQVVHRDIKGSNILVDDRGTVKLADFGASICVSDPADAGGGALKGTPYFMAPEVLQRKPHGPLVDIWSFGGAILQMVTGEPPWYSAGVSTPYALLQTM-LERKGQPPPLPANLSPSLAAMLRRCFSWDPALRPSAAQL 344          
BLAST of jgi.p|Trimin1|146327 vs. uniprot
Match: A0A835ZBQ2_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBQ2_9STRA)

HSP 1 Score: 226 bits (575), Expect = 2.450e-68
Identity = 119/212 (56.13%), Postives = 132/212 (62.26%), Query Frame = 1
Query:    1 VHRGNWVLGSQIGRGAFGQVHMGHNQVTGELIAVRRLCLVSDEKRAATSQLINEIQLMQRCHHPNIVGYLGAELHTSWVCILQEWVAGGSITSMLASFGAFPQPVTHCYARQLLQGVMYLHSCGIVHRDLKGDNVLISASGVVKIADFGTSKQLFDLQDNSAQLQGTPYFMAPEVLQRQPHGMAVDIWAFACVVLQMLTGDMPWSLALGTQK 636
            V  G W LG  IGRGAFGQVHMG +Q+TGELIA                                                  EWV GGSI S+L +FG F + +T CYA Q+LQG+MYLHSCGIVH DLKGDNVL+S SGVVKIADFGTS+Q FDLQD   +L GTPYFMAPEVLQRQ H MAVD+ AFACV+LQMLTGD PW   LGT K
Sbjct:  185 VQPGKWKLGPCIGRGAFGQVHMGLDQMTGELIA--------------------------------------------------EWVPGGSICSILQNFGPFTERITRCYAHQILQGIMYLHSCGIVHHDLKGDNVLVSTSGVVKIADFGTSEQAFDLQDRQTKLMGTPYFMAPEVLQRQRHNMAVDVLAFACVILQMLTGDAPWRSLLGTNK 346          
BLAST of jgi.p|Trimin1|146327 vs. uniprot
Match: A0A836C8F1_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8F1_9STRA)

HSP 1 Score: 218 bits (555), Expect = 1.750e-66
Identity = 126/288 (43.75%), Postives = 166/288 (57.64%), Query Frame = 1
Query:   10 GNWVLGSQIGRGAFG-QVHMGHNQVTGELIAVRRLCLVSDEKRAATSQ--------LINEIQLMQRCHHPNIVGYLGAELHTSWVCILQEWVAGGSITSMLASFGAFPQPVTHCYARQLLQGVMYLHSCGIVHRDLKGDNVLISASGVVKIADFGTSKQLFD---LQDNSAQL-------------QGTPYFMAPEVLQRQPHGMAVDIWAFACVVLQMLTGDMPWSLALGTQKTVTQLLQIMQSE--RIPPLPPDLDLSLRMALVACFSWDSVGRPTAKSLLHSGYF 792
            G W +   I RG+FG  VH+  +Q  G+L AV+ + L+  ++              L +E  LM++ HHPNIVG+L  E+  + +CI QE V GGS+ ++L  FGA P+ +  CYARQ L G+ YLH C I HRDLK  N+L+ A  V+K+ADFGTS  L D   L  +S  L              GTPYFMAPE+LQRQ HG+AVD W F   +LQM++G  PWS A G  K+   LL+ M++     PPLPP     LR  L ACF WD+  RPTA+ L    +F
Sbjct:   17 GRWKISECIARGSFGGSVHIALDQRNGQLAAVKLVPLLLRQRSDRDGXXXXXXXRALFHEAALMRQLHHPNIVGFLSVEIRNAHMCIFQELVPGGSVAALLQRFGALPEAMARCYARQALAGIEYLHKCRIAHRDLKASNMLVDAHSVLKLADFGTSVLLPDSSSLDSHSVSLTARTCAIPASGAVHGTPYFMAPEMLQRQAHGLAVDTWGFGGALLQMVSGAPPWSGA-GV-KSPAALLRHMRARDGAPPPLPPRASPPLRALLRACFRWDAAARPTAQQLRRHEFF 302          
BLAST of jgi.p|Trimin1|146327 vs. uniprot
Match: A0A7S3UV54_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UV54_HETAK)

HSP 1 Score: 213 bits (542), Expect = 1.780e-62
Identity = 117/275 (42.55%), Postives = 169/275 (61.45%), Query Frame = 1
Query:    1 VHRGNWVLGSQIGRGAFGQVHMGHNQVTGELIAVRRLCLVSDEKRAATSQLINEIQLMQRCHHPNIVGYLGAELHTSW--VCILQEWVAGGSITSMLASFGAFPQPVTHCYARQLLQGVMYLHSCGIVHRDLKGDNVLISASGVVKIADFGTSKQLFDLQDNSAQ-------LQGTPYFMAPEVLQRQPHGMAVDIWAFACVVLQMLTGDMPWSLALGTQKTVTQLLQIMQSERIPP-LPPDLDLSLRMALVACFSWDSVGRPTAKSLLHSGYFS 795
            V  G W +G +IG+G FG+V++G  + TG+LIA++ + L       AT  L  E+ LM+   HPNIV Y GAE+      +CI Q+WV GGS+ S+L  FG F + V   Y +QLL+G+ YLH+  I+HRD+KG N+L+  +GVVK+ADFGTSK+L ++ D   Q       ++GTPYFMAPEV+ RQ +G   DIW+    V++M TGD PW  +L  +  + +L + + +   PP +   L L LR+ L  CF  +   RP+AK+LL   + S
Sbjct:   87 VQPGQWKIGQRIGQGKFGEVYVGLCEDTGQLIAIKIISLPGQTSELAT--LYREVDLMRSLRHPNIVSYFGAEVSEEECSLCIFQQWVPGGSVASLLKKFGPFREHVVRKYTKQLLKGLRYLHNNKIIHRDIKGANILVDVTGVVKLADFGTSKRL-EISDELMQETMAHGTMKGTPYFMAPEVIMRQKYGRKADIWSLGGAVMEMATGDPPWK-SLQMRNPI-ELFRFIHTHTHPPNIDFSLSLPLRLFLERCFIRNPKERPSAKALLKDRFVS 356          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|146327 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z180_9STRA3.490e-195100.00Kinase-like domain-containing protein (Fragment) n... [more]
A0A836CHV3_9STRA2.560e-13270.11Kinase-like domain-containing protein (Fragment) n... [more]
A0A835YJU3_9STRA3.210e-12366.67Kinase-like domain-containing protein (Fragment) n... [more]
A0A835YKW2_9STRA2.110e-7850.00Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835YLS7_9STRA1.860e-7648.52Kinase-like domain-containing protein (Fragment) n... [more]
A0A835YTJ7_9STRA2.080e-7448.28Kinase-like domain-containing protein (Fragment) n... [more]
A0A835YLD7_9STRA1.060e-7348.85Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835ZBQ2_9STRA2.450e-6856.13Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A836C8F1_9STRA1.750e-6643.75Kinase-like domain-containing protein (Fragment) n... [more]
A0A7S3UV54_HETAK1.780e-6242.55Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_27contigContig_27:910499..913260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|146327|gw1.27.114.1
BRITEko00000,ko00001,ko01000,ko01001
KEGG Pathwayko04016,map04016
KEGG koko:K20606
EC2.7.11.25
GOsGO:0000165,GO:0000186,GO:0000226,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004709,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019220,GO:0019222,GO:0019538,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0030865,GO:0031098,GO:0031122,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032147,GO:0032268,GO:0032270,GO:0033554,GO:0033674,GO:0035556,GO:0036211,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043549,GO:0043622,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045859,GO:0045860,GO:0045937,GO:0046777,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0080090,GO:0097435,GO:0140096,GO:1901564,GO:1902531,GO:1902533
Descriptionkinase kinase kinase
COG categoryT
Max annot lvl35493|Streptophyta
EggNOG OGsKOG0198@1|root,KOG0198@2759|Eukaryota,37MNP@33090|Viridiplantae,3GDP7@35493|Streptophyta,3HWGV@3699|Brassicales
Evalue8.23e-62
Seed ortholog28532.XP_010553736.1
Hectar predicted targeting categoryother localisation
TranscriptId146649
TrackFilteredModels1
ProteinId146327
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146327gene_6979Tribonema minus UTEX_B_3156 geneContig_27 910499..913260 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6979_1exon_6979_1Tribonema minus UTEX_B_3156 exonContig_27 910499..910607 +
exon_6979_2exon_6979_2Tribonema minus UTEX_B_3156 exonContig_27 912575..913260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6979CDS_6979Tribonema minus UTEX_B_3156 CDSContig_27 910499..910607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146327Trimin1|146327|gw1.27.114.1Tribonema minus UTEX_B_3156 polypeptideContig_27 910499..913260 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6979 ID=mRNA_6979|Name=jgi.p|Trimin1|146327|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=795bp|location=Sequence derived from alignment at Contig_27:910499..913260+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTTCATCGGGGCAACTGGGTGCTGGGCTCACAGATTGGGAGGGGCGCCTT
CGGCCAGGTGCACATGGGCCACAACCAGGTGACAGGAGAGCTCATTGCGG
TAAGACGTCTCTGCTTGGTCTCAGATGAGAAGAGAGCCGCAACCAGCCAG
CTCATAAATGAGATCCAGCTCATGCAGCGCTGTCACCACCCCAATATTGT
CGGCTACCTAGGAGCCGAGCTGCACACGTCCTGGGTCTGCATCCTGCAGG
AGTGGGTTGCCGGTGGCAGCATCACCAGTATGCTCGCCAGCTTCGGCGCA
TTTCCACAGCCCGTCACCCACTGCTATGCACGCCAGCTCCTGCAGGGCGT
CATGTACCTGCACAGCTGCGGCATCGTCCACCGTGACCTCAAGGGCGACA
ACGTCCTCATCAGCGCCAGCGGGGTCGTGAAAATAGCCGACTTTGGCACA
AGCAAACAACTGTTCGACCTGCAGGACAACAGCGCCCAACTGCAAGGCAC
CCCATACTTCATGGCCCCGGAGGTGCTGCAGCGCCAGCCTCACGGCATGG
CCGTGGACATCTGGGCATTCGCCTGTGTTGTCTTGCAGATGCTCACTGGC
GACATGCCGTGGAGTTTGGCGCTGGGCACCCAGAAGACAGTGACGCAGCT
GCTGCAGATTATGCAGTCGGAGCGCATACCACCGCTGCCGCCGGATCTTG
ACCTGTCCCTGCGCATGGCCCTTGTCGCGTGCTTCAGCTGGGACTCCGTC
GGGCGTCCGACCGCCAAGTCCCTGCTGCATTCCGGCTACTTCAGC
back to top

protein sequence of jgi.p|Trimin1|146327

>Trimin1|146327|gw1.27.114.1 ID=Trimin1|146327|gw1.27.114.1|Name=jgi.p|Trimin1|146327|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=265bp
VHRGNWVLGSQIGRGAFGQVHMGHNQVTGELIAVRRLCLVSDEKRAATSQ
LINEIQLMQRCHHPNIVGYLGAELHTSWVCILQEWVAGGSITSMLASFGA
FPQPVTHCYARQLLQGVMYLHSCGIVHRDLKGDNVLISASGVVKIADFGT
SKQLFDLQDNSAQLQGTPYFMAPEVLQRQPHGMAVDIWAFACVVLQMLTG
DMPWSLALGTQKTVTQLLQIMQSERIPPLPPDLDLSLRMALVACFSWDSV
GRPTAKSLLHSGYFS
back to top

mRNA from alignment at Contig_27:910499..913260+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6979 ID=mRNA_6979|Name=jgi.p|Trimin1|146327|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2762bp|location=Sequence derived from alignment at Contig_27:910499..913260+ (Tribonema minus UTEX_B_3156 )
GTTCATCGGGGCAACTGGGTGCTGGGCTCACAGATTGGGAGGGGCGCCTT CGGCCAGGTGCACATGGGCCACAACCAGGTGACAGGAGAGCTCATTGCGG TAAGACGTCGTCAACCTGTTGTGCTGTTGCGCTTGCTCATGCTGGTTTTG ACGGTCTGCATCTGTACTCGAATCACGCCATCATATTGTTTCACAGTAGT TCATCTACCCCTGCAAGCGCGCTTCTTGAAAAATCACGCACTCAGCGGTA GCACACCGTACCAGTGCCATGTGCAAAGGCAGCAGGGGCAGCTGAACGGC AACACACAGACGTTGTGCTGAAAGCGAGTTATGGGAAGCTGAAAACATGA GACAGGCTGGACATCTTCAGCTCAGCGTAGCTGTGTCATCGAGCTCCAAA ATCTCAAACAGATCTAGAAACGATTCTGGAACAACAAATGCGATTTAAAC TGCAACTTCAAGTGTACAACTTGCAGTGCAACCACAATTAGGGCCTGCAA CATTATGTATTACATAATGGAATCCATAATGGGTCTTAATTACTGAAAAT ACATAATCATGGTAGCTGTTTCTCAGCCTCCTGTTCTCTGCAGCTTGATT TTGCAAGGTTTGTATATTGAAGTCCACTAGTGATGTGCCTTGTAGCGCAG TAGCTTCAGTTGAAGTCACTATGCAGTAGGGTAACAGGCATTTGAGGTCA TATTCTGTGAAAATACATAATGAAACACATAATGCAATCCATAATGGGCT GTGTGAAAATACATAATGTTGCAACCCCTAACCATGATGCAATCAAAGCA TTTATATTCATCAACACCCTCCCCCCGTGTACCCGCCGCTAGGTAGTGCT ATGTGCGCTAAGGGGCACCGCCCACAGCGTGCAACGCTGCCGTTGAAAGC CATAGCCCATGCCATGAAGCACTTCTGCAGACCCTGGTTGCTCAAACCTC ACACAAGCTGAATGCACTTCTGCAGATCCTTCTTCTTGTGCTCGAACCTC ACACAAGCTGAAAGCACTTCTGCACACCCTGCTCCTTGTACTGATCTGCA TCGACTGTATGCGCTTTTGGGACCCCCCCTCTTGTGCATCACTTCTGCAG TTACTAATGCACTTCTGCAGTAACTTATGCACTTCTGCAGTCACTTGCAT TTCTCGAGAACCCCTCTGCTGTGCACTGCAATAGTCGAGAGCCTCATGCA TAGATGCTCTCGTGTCCAGTGCATCCTGCACAGGCAGACCAAATCTGGCC ATGGTGCGCTATCCTCCGAGCAGTACAACCCTCACCCGCTACAAGGCTAC TGCTCAAGTTGATGTACCGTTCGTCACCGTGCAGTACCAGCACAACTTCT GTCGGTAGCCCAATGCATAAACTTAGGCCCCTTGTTTGGTGCTGCATGAG TCCTCAAGCATCTCCTGAATGTCTCATTGAGTAAGAACGCAACCATTGAG CGATACCGTGATGGCAATTGTCTTAGCTGTGCAGACTCAAAGAGAATAAT TGGCCGCACCACCCTGCCTGTCTCTATCATTCTTTTGCTGCGCCTGGTGT CATGCCGCGTAAGAGCCCTTCGCCAGTGGACTGCCGTTCCTTTCGCTACA GCATTGCTTCTCATTGTGCCCCACCTTGGAGCACCAGCCGCAGATGATAT CGAAACGGATGACGATGCAGGCTGCATCGCTGCTGAAGATGTCCAAGCTG CTGCTGCTGTTGGCTACTGCTCCTTGCTGATGCTGTCCTGTACCTGGATG TTCATGCGCACTGACTCAAACTGTGGTGGCAGGCTGTTGATGATGAAGTC ACGAAGCATCAGATCTCCCACAGGCTCCACGAGCAGCGTGAACTGAAGCT ACATGCACTCAGCACGAAGGAAGAACGTGTTGCAGTCGCTGCTGGTGTCC TAAGTGCATGTTCAATATGAGCTCCACAGCGTGAGCCTGCGCAACATTGA GTGCAAAACATTTCTACTTAAGGTATCAGCGCTCATGTCAACAGAAGTCA TGCGACATCTCGCTGAGGTGCCGTTGCTGCCACCACTTCTGCTGCTGCCG ACGCTGCTGCACGCCTCAGGTGAAAGTCTGCTTGGTCTCAGATGAGAAGA GAGCCGCAACCAGCCAGCTCATAAATGAGATCCAGCTCATGCAGCGCTGT CACCACCCCAATATTGTCGGCTACCTAGGAGCCGAGCTGCACACGTCCTG GGTCTGCATCCTGCAGGAGTGGGTTGCCGGTGGCAGCATCACCAGTATGC TCGCCAGCTTCGGCGCATTTCCACAGCCCGTCACCCACTGCTATGCACGC CAGCTCCTGCAGGGCGTCATGTACCTGCACAGCTGCGGCATCGTCCACCG TGACCTCAAGGGCGACAACGTCCTCATCAGCGCCAGCGGGGTCGTGAAAA TAGCCGACTTTGGCACAAGCAAACAACTGTTCGACCTGCAGGACAACAGC GCCCAACTGCAAGGCACCCCATACTTCATGGCCCCGGAGGTGCTGCAGCG CCAGCCTCACGGCATGGCCGTGGACATCTGGGCATTCGCCTGTGTTGTCT TGCAGATGCTCACTGGCGACATGCCGTGGAGTTTGGCGCTGGGCACCCAG AAGACAGTGACGCAGCTGCTGCAGATTATGCAGTCGGAGCGCATACCACC GCTGCCGCCGGATCTTGACCTGTCCCTGCGCATGGCCCTTGTCGCGTGCT TCAGCTGGGACTCCGTCGGGCGTCCGACCGCCAAGTCCCTGCTGCATTCC GGCTACTTCAGC
back to top

Coding sequence (CDS) from alignment at Contig_27:910499..913260+

>mRNA_6979 ID=mRNA_6979|Name=jgi.p|Trimin1|146327|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=795bp|location=Sequence derived from alignment at Contig_27:910499..913260+ (Tribonema minus UTEX_B_3156 )
GTTCATCGGGGCAACTGGGTGCTGGGCTCACAGATTGGGAGGGGCGCCTT
CGGCCAGGTGCACATGGGCCACAACCAGGTGACAGGAGAGCTCATTGCGG
TAAGACGTCTCTGCTTGGTCTCAGATGAGAAGAGAGCCGCAACCAGCCAG
CTCATAAATGAGATCCAGCTCATGCAGCGCTGTCACCACCCCAATATTGT
CGGCTACCTAGGAGCCGAGCTGCACACGTCCTGGGTCTGCATCCTGCAGG
AGTGGGTTGCCGGTGGCAGCATCACCAGTATGCTCGCCAGCTTCGGCGCA
TTTCCACAGCCCGTCACCCACTGCTATGCACGCCAGCTCCTGCAGGGCGT
CATGTACCTGCACAGCTGCGGCATCGTCCACCGTGACCTCAAGGGCGACA
ACGTCCTCATCAGCGCCAGCGGGGTCGTGAAAATAGCCGACTTTGGCACA
AGCAAACAACTGTTCGACCTGCAGGACAACAGCGCCCAACTGCAAGGCAC
CCCATACTTCATGGCCCCGGAGGTGCTGCAGCGCCAGCCTCACGGCATGG
CCGTGGACATCTGGGCATTCGCCTGTGTTGTCTTGCAGATGCTCACTGGC
GACATGCCGTGGAGTTTGGCGCTGGGCACCCAGAAGACAGTGACGCAGCT
GCTGCAGATTATGCAGTCGGAGCGCATACCACCGCTGCCGCCGGATCTTG
ACCTGTCCCTGCGCATGGCCCTTGTCGCGTGCTTCAGCTGGGACTCCGTC
GGGCGTCCGACCGCCAAGTCCCTGCTGCATTCCGGCTACTTCAGC
back to top