mRNA_694 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156927
Unique NamemRNA_694
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|156927 vs. uniprot
Match: A0A836CI31_9STRA (Peptidase C14, caspase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI31_9STRA)

HSP 1 Score: 494 bits (1271), Expect = 2.160e-176
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 1
Query:    1 MSTKSRALCIGINYTGSSSALQGCINDAKNLSALLNASGAVASANIQLLCEATAAQIHEGLTNLAQKCKDDKLTYAFISYSGHGTQVADLNKDETDGKDECICPSDFTKSGVITDDMLKDRIAQFPSWTTVCFLCDACHSGSMLDLNHTYVNSIDTVSGTNSLACKVVMISGCRDNQTSADAFDQSSSAYTGAMTSAMLKSLKNVFACRTDVIRLVAEMRKVLRAGGFSQYPVLSTSFTLPRQFAFIPYTSA 756
            MSTKSRALCIGINYTGSSSALQGCINDAKNLSALLNASGAVASANIQLLCEATAAQIHEGLTNLAQKCKDDKLTYAFISYSGHGTQVADLNKDETDGKDECICPSDFTKSGVITDDMLKDRIAQFPSWTTVCFLCDACHSGSMLDLNHTYVNSIDTVSGTNSLACKVVMISGCRDNQTSADAFDQSSSAYTGAMTSAMLKSLKNVFACRTDVIRLVAEMRKVLRAGGFSQYPVLSTSFTLPRQFAFIPYTSA
Sbjct:    1 MSTKSRALCIGINYTGSSSALQGCINDAKNLSALLNASGAVASANIQLLCEATAAQIHEGLTNLAQKCKDDKLTYAFISYSGHGTQVADLNKDETDGKDECICPSDFTKSGVITDDMLKDRIAQFPSWTTVCFLCDACHSGSMLDLNHTYVNSIDTVSGTNSLACKVVMISGCRDNQTSADAFDQSSSAYTGAMTSAMLKSLKNVFACRTDVIRLVAEMRKVLRAGGFSQYPVLSTSFTLPRQFAFIPYTSA 252          
BLAST of jgi.p|Trimin1|156927 vs. uniprot
Match: A0A835Z623_9STRA (Peptidase C14 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z623_9STRA)

HSP 1 Score: 288 bits (737), Expect = 3.850e-95
Identity = 151/246 (61.38%), Postives = 183/246 (74.39%), Query Frame = 1
Query:   10 KSRALCIGINYTGSSSALQGCINDAKNLSALLNASGAVASANIQLLCEATAAQIHEGLTNLAQKCKDDKLTYAFISYSGHGTQVADLNKDETDGKDECICPSDFTKSGVITDDMLKDRIAQFPSWTTVCFLCDACHSGSMLDLNHTYVNSIDTVSGTNSLACKVVMISGCRDNQTSADAFDQSSSAYTGAMTSAMLKSLKNVFACRTDVIRLVAEMRKVLRAGGFSQYPVLSTSFTLPRQFAFIPY 747
            KS+ALCIGINY  +++ALQGC+NDAKNL  LL  SGAVA+ +I +LCE T   I   ++ LA+  K   L Y FISYSGHGTQ+ D   DETDGKDE ICP+DF   GVITDD+LK  + QF + TTVCFL DACHSGSMLDLN TY + + T+SG  +L  K+  ISGCRD QTSADAFDQ S  +TGAMTSA++K+ K       DV  LVA+M+K+LRAGG+SQ PVLS+SF +PRQFAFIP+
Sbjct:    3 KSKALCIGINYGKTANALQGCVNDAKNLQKLLVDSGAVAAEDITVLCEPTGEDICNAISKLAELSKSQDLDYIFISYSGHGTQIKDTTGDETDGKDEAICPADFGTRGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYTSRLCTLSGEATLPGKIAYISGCRDTQTSADAFDQDSRQFTGAMTSALIKAHKVDEETHHDVFALVADMKKLLRAGGYSQIPVLSSSFDIPRQFAFIPH 248          
BLAST of jgi.p|Trimin1|156927 vs. uniprot
Match: A0A835YZ34_9STRA (Caspase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ34_9STRA)

HSP 1 Score: 288 bits (737), Expect = 3.900e-94
Identity = 151/246 (61.38%), Postives = 183/246 (74.39%), Query Frame = 1
Query:   10 KSRALCIGINYTGSSSALQGCINDAKNLSALLNASGAVASANIQLLCEATAAQIHEGLTNLAQKCKDDKLTYAFISYSGHGTQVADLNKDETDGKDECICPSDFTKSGVITDDMLKDRIAQFPSWTTVCFLCDACHSGSMLDLNHTYVNSIDTVSGTNSLACKVVMISGCRDNQTSADAFDQSSSAYTGAMTSAMLKSLKNVFACRTDVIRLVAEMRKVLRAGGFSQYPVLSTSFTLPRQFAFIPY 747
            KS+ALCIGINY  +++ALQGC+NDAKNL  LL  SGAVA+ +I +LCE T  +I   ++ LA+  K   L Y FISYSGHGTQ+ D   DETDGKDE ICP+DF   GVITDD+LK  + QF + TTVCFL DACHSGSMLDLN TY + + T+SG  +L  K+  ISGCRD QTSADAFDQ S  +TGAMTSA++K+ K       DV  LVA M+K+LRAGG+SQ PVLS+SF +PRQFAFIP+
Sbjct:    3 KSKALCIGINYGKTANALQGCVNDAKNLQKLLVDSGAVAAEDITVLCEPTGEEICNAISKLAELSKSQDLDYTFISYSGHGTQIKDTTGDETDGKDEAICPADFGMRGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYTSRLCTLSGDATLPGKIAYISGCRDTQTSADAFDQDSRQFTGAMTSALIKAQKLDEETHHDVFALVAGMKKLLRAGGYSQIPVLSSSFDIPRQFAFIPH 248          
BLAST of jgi.p|Trimin1|156927 vs. uniprot
Match: A0A835ZCN1_9STRA (Peptidase C14, caspase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCN1_9STRA)

HSP 1 Score: 278 bits (712), Expect = 2.410e-91
Identity = 145/247 (58.70%), Postives = 178/247 (72.06%), Query Frame = 1
Query:    7 TKSRALCIGINYTGSSSALQGCINDAKNLSALLNASGAVASANIQLLCEATAAQIHEGLTNLAQKCKDDKLTYAFISYSGHGTQVADLNKDETDGKDECICPSDFTKSGVITDDMLKDRIAQFPSWTTVCFLCDACHSGSMLDLNHTYVNSIDTVSGTNSLACKVVMISGCRDNQTSADAFDQSSSAYTGAMTSAMLKSLKNVFACRTDVIRLVAEMRKVLRAGGFSQYPVLSTSFTLPRQFAFIPY 747
            ++SRALCIGINY  +++ALQGC+NDA NLS LL+ SGAVA  +I +LCE T  ++   +++LA       L Y FISYSGHGTQV D+  DE DG+DE ICPSDF   GVITDD+LK  + +F   TTVCFL DACHSGS+LD+N  Y + I T+SG   L  K+  ISGCRD QTSADA+DQ S  Y G MT A +KS K   A RTDV +LVAEMRK+LRA G++Q PVL+ SF +PR F+FIPY
Sbjct:    2 SRSRALCIGINYGKTANALQGCVNDANNLSKLLDGSGAVAMEDITVLCEPTGEELCNAISHLADLSVSQNLNYVFISYSGHGTQVKDVTGDEADGRDEAICPSDFNIKGVITDDLLKSLLQRFNIATTVCFLADACHSGSLLDMNRQYTSKICTLSGDAELPGKIAYISGCRDPQTSADAYDQDSRTYQGVMTCARIKSQKINPATRTDVFKLVAEMRKLLRAQGYAQIPVLTASFDIPRAFSFIPY 248          
BLAST of jgi.p|Trimin1|156927 vs. uniprot
Match: A0A836CKL4_9STRA (Putative caspase-1, p20 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKL4_9STRA)

HSP 1 Score: 213 bits (543), Expect = 1.170e-65
Identity = 121/245 (49.39%), Postives = 164/245 (66.94%), Query Frame = 1
Query:   13 SRALCIGINYTGSSSALQGCINDAKNLSALLNASGAVASANIQLLCEATAAQIHEGLTNLAQKCKDDKLTYAFISYSGHGTQVADLNKDETDGKDECICPSDFTKSGVITDDMLKDRIAQFPSWTTVCFLCDACHSGSMLDLNHTYVNSIDTVSGTNS-LACKVVMISGCRDNQTSADAFDQSSSAYTGAMTSAMLKSLKNVFACRTDVIRLVAEMRKVLRAGGFSQYPVLSTSFTLPRQFAFIP 744
            SRAL +  NY G+ + L+GC ND   L A L +SGAV    +++L EA+AA     L +LA++ ++++L Y FI+YSGHGTQV D + DE DG DE ICP D   +GV++DD+L+   A F   T+V F+CDACHSGSMLDL  +Y       +G  S +  +V+MISGCRD+QTSADAF    + Y GA+T  +L+SL++V   R DV RLV E  + L+ GGF Q PVLS+SF +PR+ AF+P
Sbjct:    3 SRALLLCNNYVGTDAELRGCHNDGDCLKAALVSSGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAF-LGGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRHAFMP 246          
BLAST of jgi.p|Trimin1|156927 vs. uniprot
Match: A0A835XKF2_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XKF2_9CHLO)

HSP 1 Score: 163 bits (413), Expect = 1.050e-45
Identity = 108/263 (41.06%), Postives = 149/263 (56.65%), Query Frame = 1
Query:   10 KSRALCIGINYTGS-SSALQGCINDAKNLSA-LLNASGAVASANIQLLCEATAAQIHEG------------LTNLAQKCKDDKLTYAFISYSGHGTQVADLNKDETDGKDECICPSDFTKSGVITDDMLKDRIAQFPSWTTVCFLCDACHSGSMLDLNHTYVNSIDTVSGTNS-LACKVVMISGCRDNQTSADAFD-QSSSAYTGAMTSAMLKSLKNVFACRTDVIRLVAEMRKVLRAGGFSQYPVLSTSFTL--PRQFAFIP 744
            ++RAL  G+NY    SSALQGCIND +N+ A L+N  GA      +L+C+        G            L+ LA     + L + +I YSGHGT+V D +KDE DG DEC+ PSD+T +GVI DD L     QF   T V  + D+CHSG+++DL +++     T+  +NS +   ++ +SGC D+QTSADA++      YTGAMTS ML  L+   A   D   LV  MR  LR   F+Q+P L +SF+L  P   A +P
Sbjct:   28 RARALLFGLNYAHMPSSALQGCINDVQNMKAYLMNRLGA------ELVCDVATDDTAAGRTATSAMGMTRKLSELAVLTYKEDLEFVWIHYSGHGTRVVDRSKDELDGYDECLVPSDYTTAGVIPDDYLAKLFEQFNPKTRVIAVFDSCHSGTVVDLKYSWEGRACTMENSNSRVRAPIMALSGCLDSQTSADAYNVDGQRQYTGAMTSVMLHVLQTTGAAADDAFLLVDAMRAHLREQNFTQWPKLCSSFSLVLPSSRAMLP 284          
BLAST of jgi.p|Trimin1|156927 vs. uniprot
Match: A0A6C0BGG3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BGG3_9ZZZZ)

HSP 1 Score: 152 bits (384), Expect = 9.510e-42
Identity = 96/256 (37.50%), Postives = 144/256 (56.25%), Query Frame = 1
Query:   10 KSRALCIGINYTGSSSA-LQGCINDAKNLSALLNASGAVASANIQLLCE------ATAAQIHEGLTNLAQKCKDDKLTYAFISYSGHGTQVADLNKDETDGKDECICPSDFTKSGVITDDMLKDRIAQFPSWTTVCFLCDACHSGSMLDLNHTYVNSIDTVSGTN---SLACKVVMISGCRDNQTSADAFDQ-SSSAYTGAMTSAMLKSLKNVFACRTDVIRLVAEMRKVLRAGGFSQYPVLSTSFTLPRQFAFIP 744
            + RAL  G+NY  S  A L GCIND  N+S  LN +  +    +++  +       +A  I   L  LA +   +KL + ++ YSGHG+ + D + DE DGKDEC+ PSD+ KSG+I+DD +      F   T V  + D CHSG++ D+ +++     T +  N   S+  +++ +SGC DNQTSADA +    + Y GA+TS +L  LK     + DV +++A +R  LR  GFSQ P L +++ L R   FIP
Sbjct:    2 RGRALLFGLNYATSPDAKLNGCINDVINISKYLNTNLGIP---VKVCTDDGDTYSTSAMGIIRNLYELALQSYSEKLDFVWVHYSGHGSYIVDKSGDEKDGKDECLVPSDYAKSGMISDDFINTLFGYFNPNTRVICVFDCCHSGTIGDVKYSWEGP-KTCAVENILCSIPARIITLSGCFDNQTSADAHNVLGDNKYVGALTSCLLMVLKEQPQVKNDVFQMIANLRTKLRERGFSQLPKLCSTYNLARDKVFIP 253          
BLAST of jgi.p|Trimin1|156927 vs. uniprot
Match: A0A6C0E8Z1_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0E8Z1_9ZZZZ)

HSP 1 Score: 149 bits (375), Expect = 2.670e-40
Identity = 98/240 (40.83%), Postives = 136/240 (56.67%), Query Frame = 1
Query:   19 ALCIGINYTGSSSALQGCINDAKNLSALLNASGAVASANIQLLCE-------ATAAQIHEGLTNLAQKCKDDKLTYAFISYSGHGTQVADLNKDETDGKDECICPSDFTKSGVITDDMLKDRIAQFPSWTTVCFLCDACHSGSMLDLNHTYV--NSIDTVSGTNSLACKVVMISGCRDNQTSADAFDQSSSAYTGAMTSAMLKSLKNVFACRTDVIRLVAEMRKVLRAGGFSQYPVLSTS 711
            AL IGINY G+S+ L GCIND  N+  +L  +    + NI ++ E        TA  I     +L  K    +    +  YSGHG+ + D N DE DGKDE I P D+ KSG+I+DD+L + +   P  T    L D CHSG++LDL H Y+  N   T +  + +  KVVMISGC+D+QTSADA     + ++GAMT+A LKS++ +   +T    L+  MR  LR   + Q P LS+S
Sbjct:    5 ALLIGINYKGTSNELNGCINDVTNMRDVLIKNFGYLAENIVVMTEDQPNNLKPTALNIMNQFGSLIIKAHHKQAKEIWFHYSGHGSYIDDTNGDELDGKDEVIVPLDYEKSGMISDDLLHNYMEYLPVETRFFCLFDCCHSGTILDLKHRYLGGNKHHTENNKSKIKGKVVMISGCKDDQTSADALI--GTKWSGAMTAAFLKSME-LCEYKTTYYHLLDLMRDYLRENKYDQIPQLSSS 241          
BLAST of jgi.p|Trimin1|156927 vs. uniprot
Match: A0A1V0SD98_9VIRU (Caspase domain protein n=1 Tax=Indivirus ILV1 TaxID=1977633 RepID=A0A1V0SD98_9VIRU)

HSP 1 Score: 146 bits (368), Expect = 9.740e-39
Identity = 96/261 (36.78%), Postives = 139/261 (53.26%), Query Frame = 1
Query:   16 RALCIGINYTGSSSALQGCINDAKNLSALLNASGAVASANIQLLCEATAAQIHEGLTNLAQKCKD---------DKLTYAFISYSGHGTQVADLNKDETDGKDECICPSDFTKSGVITDDMLKDRIAQ-FPSWTTVCFLCDACHSGSMLDLNHTYV----NSIDTVSGTNSLACKVVMISGCRDNQTSADAFD----QSSSAYTGAMTSAMLKSL-KNVFACRTDVIRLVAEMRKVLRAGGFSQYPVLSTSFTLPRQFAFI 741
            + L IGINY+GSSS L GCIND++N+  LL + G     NI ++ +     ++    N+ ++  +         DK    F++YSGHGT V D N DE DG DE +CP D+  +G I DD +K       PS + +  L DACHSG+MLDL + Y+    N+    S  +   C VV ISGCRDNQTSADA++           GAMT++ +    KN+         LV ++R+ L+   ++Q P L++   +     FI
Sbjct:   52 KCLLIGINYSGSSSQLNGCINDSENIKTLLVSGGYFNENNITMMNDNLQGNLYPSKENILKQFSEIVKFANSNKDKQVQIFVAYSGHGTSVLDENGDENDGYDEALCPIDYLDAGFIIDDDIKANFVNALPSNSKLLMLVDACHSGTMLDLKYEYLANNKNTYSVHSKNSETKCDVVSISGCRDNQTSADAWEYDLYDKRKEGQGAMTASFISCYNKNI-----SYYTLVTKIREWLKKKQYTQVPQLTSGKLIDINSKFI 307          
BLAST of jgi.p|Trimin1|156927 vs. uniprot
Match: A0A7D3UU47_9VIRU (Caspase n=1 Tax=Fadolivirus 1 TaxID=2740746 RepID=A0A7D3UU47_9VIRU)

HSP 1 Score: 147 bits (371), Expect = 1.280e-38
Identity = 98/250 (39.20%), Postives = 135/250 (54.00%), Query Frame = 1
Query:   10 KSRALCIGINYTGSSSALQGCINDAKNLSALLNASGAVASANIQLLCE------ATAAQIHEGLTNLAQKCKDDKLTYAFISYSGHGTQVADLNKDETDGKDECICPSDFTKSGVITDDML-KDRIAQFPSWTTVCFLCDACHSGSMLDLNHTYVNSIDTVSGTNSLACKVVMISGCRDNQTSADAFDQSSSAYTGAMTSAMLKSLKNVFACRTDVIRLVAEMRKVLRAGGFSQYP--VLSTSFTLPRQF 732
            K  A+ IGINY G+ S L GCINDA +L   L         NI +L +       T   I      L  K  +++ T  + SYSGHG+ V D N DE DG+DE +CP D+  +G+ITDD +  + + + P+  T+  L DACHSG+M DL   Y NS+   +        V+ ISGCRD+QTSADA+    S Y GAMT + L +L N  +    +  L+A+MR +L    ++Q P   L+ S  L R F
Sbjct:   11 KKFAVLIGINYFGTGSQLNGCINDANHLKLFLLEKCGYLPENIMMLTDDGLGVRPTKQNIINSFATLVSKATNEQFTELWFSYSGHGSYVTDYNSDENDGRDEVLCPVDYDTAGMITDDFIYANLVNKLPATATLFALTDACHSGTMFDLPFLYTNSLINNNKNTGHVANVMSISGCRDDQTSADAYI--GSKYEGAMTWSFLNALSNS-SYNIKLNDLLAKMRTLL-LNNYTQVPQLALTKSLDLDRYF 256          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156927 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CI31_9STRA2.160e-176100.00Peptidase C14, caspase domain-containing protein n... [more]
A0A835Z623_9STRA3.850e-9561.38Peptidase C14 n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A835YZ34_9STRA3.900e-9461.38Caspase domain-containing protein n=1 Tax=Tribonem... [more]
A0A835ZCN1_9STRA2.410e-9158.70Peptidase C14, caspase domain-containing protein n... [more]
A0A836CKL4_9STRA1.170e-6549.39Putative caspase-1, p20 n=2 Tax=Tribonema minus Ta... [more]
A0A835XKF2_9CHLO1.050e-4541.06Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A6C0BGG3_9ZZZZ9.510e-4237.50Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0E8Z1_9ZZZZ2.670e-4040.83Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A1V0SD98_9VIRU9.740e-3936.78Caspase domain protein n=1 Tax=Indivirus ILV1 TaxI... [more]
A0A7D3UU47_9VIRU1.280e-3839.20Caspase n=1 Tax=Fadolivirus 1 TaxID=2740746 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1153563..1154321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156927|e_gw1.2.324.1
DescriptionCaspase domain
COG categoryDO
Max annot lvl33154|Opisthokonta
EggNOG OGsKOG1546@1|root,KOG1546@2759|Eukaryota,3A34R@33154|Opisthokonta
Evalue5.5e-31
Seed ortholog72019.SARC_05043T0
Hectar predicted targeting categoryother localisation
TranscriptId157249
TrackFilteredModels1
ProteinId156927
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156927gene_694Tribonema minus UTEX_B_3156 geneContig_2 1153563..1154321 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_694_1exon_694_1Tribonema minus UTEX_B_3156 exonContig_2 1153563..1154321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_694CDS_694Tribonema minus UTEX_B_3156 CDSContig_2 1153563..1154321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156927Trimin1|156927|e_gw1.2.324.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1153563..1154321 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_694 ID=mRNA_694|Name=jgi.p|Trimin1|156927|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=759bp|location=Sequence derived from alignment at Contig_2:1153563..1154321+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTACCAAATCCAGAGCACTCTGTATTGGGATAAACTACACCGGATC
ATCGAGCGCCTTGCAAGGATGCATCAATGACGCCAAGAACCTCAGCGCAC
TTCTGAACGCCAGTGGCGCGGTGGCGTCAGCCAACATTCAGCTTCTGTGC
GAAGCTACCGCTGCACAAATACATGAGGGCCTGACGAACCTCGCACAAAA
ATGTAAAGATGATAAACTAACGTACGCCTTCATCAGCTACAGCGGCCACG
GCACGCAAGTAGCTGATCTGAACAAAGACGAAACAGACGGTAAGGATGAG
TGTATATGCCCCAGTGACTTTACCAAAAGCGGTGTAATTACAGATGATAT
GCTTAAAGACAGGATAGCCCAGTTCCCTTCGTGGACTACAGTGTGTTTTC
TTTGTGATGCTTGCCACTCCGGATCCATGTTAGACTTGAACCACACGTAC
GTAAATAGCATAGATACTGTGAGTGGGACAAATTCCCTTGCGTGCAAAGT
TGTCATGATATCTGGTTGCCGGGATAATCAGACGTCGGCAGACGCATTCG
ATCAATCGAGCAGTGCGTACACAGGTGCCATGACATCTGCAATGCTTAAA
TCATTGAAGAACGTTTTTGCTTGTAGAACTGATGTGATTAGACTAGTGGC
CGAAATGCGCAAGGTGCTCAGAGCTGGCGGGTTTTCCCAATACCCTGTGC
TGTCCACGTCATTTACTCTCCCTCGACAGTTCGCATTCATACCGTACACA
TCCGCTTGA
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protein sequence of jgi.p|Trimin1|156927

>Trimin1|156927|e_gw1.2.324.1 ID=Trimin1|156927|e_gw1.2.324.1|Name=jgi.p|Trimin1|156927|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=253bp
MSTKSRALCIGINYTGSSSALQGCINDAKNLSALLNASGAVASANIQLLC
EATAAQIHEGLTNLAQKCKDDKLTYAFISYSGHGTQVADLNKDETDGKDE
CICPSDFTKSGVITDDMLKDRIAQFPSWTTVCFLCDACHSGSMLDLNHTY
VNSIDTVSGTNSLACKVVMISGCRDNQTSADAFDQSSSAYTGAMTSAMLK
SLKNVFACRTDVIRLVAEMRKVLRAGGFSQYPVLSTSFTLPRQFAFIPYT
SA*
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mRNA from alignment at Contig_2:1153563..1154321+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_694 ID=mRNA_694|Name=jgi.p|Trimin1|156927|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=759bp|location=Sequence derived from alignment at Contig_2:1153563..1154321+ (Tribonema minus UTEX_B_3156 )
ATGTCTACCAAATCCAGAGCACTCTGTATTGGGATAAACTACACCGGATC ATCGAGCGCCTTGCAAGGATGCATCAATGACGCCAAGAACCTCAGCGCAC TTCTGAACGCCAGTGGCGCGGTGGCGTCAGCCAACATTCAGCTTCTGTGC GAAGCTACCGCTGCACAAATACATGAGGGCCTGACGAACCTCGCACAAAA ATGTAAAGATGATAAACTAACGTACGCCTTCATCAGCTACAGCGGCCACG GCACGCAAGTAGCTGATCTGAACAAAGACGAAACAGACGGTAAGGATGAG TGTATATGCCCCAGTGACTTTACCAAAAGCGGTGTAATTACAGATGATAT GCTTAAAGACAGGATAGCCCAGTTCCCTTCGTGGACTACAGTGTGTTTTC TTTGTGATGCTTGCCACTCCGGATCCATGTTAGACTTGAACCACACGTAC GTAAATAGCATAGATACTGTGAGTGGGACAAATTCCCTTGCGTGCAAAGT TGTCATGATATCTGGTTGCCGGGATAATCAGACGTCGGCAGACGCATTCG ATCAATCGAGCAGTGCGTACACAGGTGCCATGACATCTGCAATGCTTAAA TCATTGAAGAACGTTTTTGCTTGTAGAACTGATGTGATTAGACTAGTGGC CGAAATGCGCAAGGTGCTCAGAGCTGGCGGGTTTTCCCAATACCCTGTGC TGTCCACGTCATTTACTCTCCCTCGACAGTTCGCATTCATACCGTACACA TCCGCTTGA
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Coding sequence (CDS) from alignment at Contig_2:1153563..1154321+

>mRNA_694 ID=mRNA_694|Name=jgi.p|Trimin1|156927|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=759bp|location=Sequence derived from alignment at Contig_2:1153563..1154321+ (Tribonema minus UTEX_B_3156 )
ATGTCTACCAAATCCAGAGCACTCTGTATTGGGATAAACTACACCGGATC
ATCGAGCGCCTTGCAAGGATGCATCAATGACGCCAAGAACCTCAGCGCAC
TTCTGAACGCCAGTGGCGCGGTGGCGTCAGCCAACATTCAGCTTCTGTGC
GAAGCTACCGCTGCACAAATACATGAGGGCCTGACGAACCTCGCACAAAA
ATGTAAAGATGATAAACTAACGTACGCCTTCATCAGCTACAGCGGCCACG
GCACGCAAGTAGCTGATCTGAACAAAGACGAAACAGACGGTAAGGATGAG
TGTATATGCCCCAGTGACTTTACCAAAAGCGGTGTAATTACAGATGATAT
GCTTAAAGACAGGATAGCCCAGTTCCCTTCGTGGACTACAGTGTGTTTTC
TTTGTGATGCTTGCCACTCCGGATCCATGTTAGACTTGAACCACACGTAC
GTAAATAGCATAGATACTGTGAGTGGGACAAATTCCCTTGCGTGCAAAGT
TGTCATGATATCTGGTTGCCGGGATAATCAGACGTCGGCAGACGCATTCG
ATCAATCGAGCAGTGCGTACACAGGTGCCATGACATCTGCAATGCTTAAA
TCATTGAAGAACGTTTTTGCTTGTAGAACTGATGTGATTAGACTAGTGGC
CGAAATGCGCAAGGTGCTCAGAGCTGGCGGGTTTTCCCAATACCCTGTGC
TGTCCACGTCATTTACTCTCCCTCGACAGTTCGCATTCATACCGTACACA
TCCGCTTGA
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