mRNA_6918 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348567
Unique NamemRNA_6918
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348567 vs. uniprot
Match: A0A836CFW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFW3_9STRA)

HSP 1 Score: 201 bits (511), Expect = 7.550e-63
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1
Query:    1 MVADSYSSVVGGKLSLKTKSLFKGNKKRKAKKAEDGAGQSSEPAAXXXXXXXXXXXXXXXXXXRETEVDPDEFLTPAQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 390
            MVADSYSSVVGGKLSLKTKSLFKGNKKRKAKKAEDGAGQSSEPAAXXXXXXXXXXXXXXXXXXRETEVDPDEFLTPAQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG
Sbjct:    1 MVADSYSSVVGGKLSLKTKSLFKGNKKRKAKKAEDGAGQSSEPAAXXXXXXXXXXXXXXXXXXRETEVDPDEFLTPAQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 130          
BLAST of jgi.p|Trimin1|348567 vs. uniprot
Match: A0A835YYZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYZ7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 6.180e-20
Identity = 59/132 (44.70%), Postives = 76/132 (57.58%), Query Frame = 1
Query:    4 VADSYSSVVGGKLSLKTKSLFKGNKKR---KAKKAEDGAGQSSEPAAXXXXXXXXXXXXXXXXXXRETEVDPDEFLTPAQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 390
            +AD YSSV  GKLSLK   LF G   +     K+A +GA  S EPA                        D D  LTPAQKR+K+ + +++ + ++ +VK THR R+EEFN  +A +TEHNDIPRISAAGNG
Sbjct:    1 MADDYSSVQRGKLSLKADGLFGGGANKGGGNKKRAREGA--SEEPARSNSAKGSADSVRGAAAPSVSGSSDVDSGLTPAQKRFKEAQLARERQVMRELVKKTHRQRVEEFNQKIAKLTEHNDIPRISAAGNG 130          
BLAST of jgi.p|Trimin1|348567 vs. uniprot
Match: D7FPR7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPR7_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 5.050e-14
Identity = 36/60 (60.00%), Postives = 51/60 (85.00%), Query Frame = 1
Query:  211 DEFLTPAQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 390
            D+ LTPAQ+R+++++  ++ K+I+ +V+ THR+RIE FN+ LASMTEHNDIPR SAAGNG
Sbjct:  118 DDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 177          
BLAST of jgi.p|Trimin1|348567 vs. uniprot
Match: A0A7S3LZW5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZW5_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.240e-13
Identity = 37/60 (61.67%), Postives = 49/60 (81.67%), Query Frame = 1
Query:  211 DEFLTPAQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 390
            +E+LTP+QKR+ Q+K  ++++  K + K + RDR+E FNS LASMTEHNDIPRISAAGNG
Sbjct:   67 EEYLTPSQKRHLQRKIEKEKEEAKKLSKTSFRDRVEIFNSKLASMTEHNDIPRISAAGNG 126          
BLAST of jgi.p|Trimin1|348567 vs. uniprot
Match: A0A482S2J5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2J5_9ARCH)

HSP 1 Score: 68.6 bits (166), Expect = 2.690e-11
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  211 DEFLTPAQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 390
            D  LT AQ+R+K+++  ++EK+IK     + RDR+EEFN  L+ +TEHNDIPR+SAAGNG
Sbjct:   58 DAHLTEAQRRFKRRQQEKEEKKIKVEASKSFRDRVEEFNYKLSKLTEHNDIPRVSAAGNG 117          
BLAST of jgi.p|Trimin1|348567 vs. uniprot
Match: A0A067C7L3_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C7L3_SAPPC)

HSP 1 Score: 67.4 bits (163), Expect = 8.610e-11
Identity = 50/138 (36.23%), Postives = 77/138 (55.80%), Query Frame = 1
Query:   10 DSYSSVVGGKLSLKTKSL-FKGNKKRKA----KKAEDGAGQSSEPAAXXXXXXXXXXXXXXXXXXRETEVDPDEFLTP------AQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 390
            D Y +++GGKLSLK K +  K  K +KA    +K EDG     E AA                  ++  VD D  L P      AQK++ + K+ ++E+ I+     T+R+R+EE+++ L ++TEH+D+PR+SAAGNG
Sbjct:    2 DGYRNIMGGKLSLKAKGIPVKAKKTKKAXXXSRKHEDG--DDGEVAAKKTTS-------------KKVRVDDDVVLVPMGGMTDAQKKHAKFKSKREEEDIRKQASKTYRERVEEYSTYLGNLTEHHDVPRVSAAGNG 124          
BLAST of jgi.p|Trimin1|348567 vs. uniprot
Match: A0A3M6VP18_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VP18_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.490e-10
Identity = 32/66 (48.48%), Postives = 50/66 (75.76%), Query Frame = 1
Query:  193 ETEVDPDEFLTPAQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 390
            + EVD +E +TPAQ+R+ + +  ++++ IK +   T+R+RIEE N  L S+TEH+D+PR+SAAGNG
Sbjct:   49 DVEVDTEE-MTPAQRRHAEHQKKREQEEIKKLASKTYRERIEELNQHLGSLTEHHDVPRVSAAGNG 113          
BLAST of jgi.p|Trimin1|348567 vs. uniprot
Match: A0A7S2H078_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H078_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.620e-10
Identity = 30/59 (50.85%), Postives = 44/59 (74.58%), Query Frame = 1
Query:  214 EFLTPAQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 390
            E LT AQKRY+    +++++  +  V+ THR+++E+FN  L  +TEHNDIPR+SAAGNG
Sbjct:   57 EVLTAAQKRYRATMKAREQEHARVAVRKTHREKVEDFNYMLGELTEHNDIPRVSAAGNG 115          
BLAST of jgi.p|Trimin1|348567 vs. uniprot
Match: A0A1V9YXG3_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YXG3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.640e-10
Identity = 45/133 (33.83%), Postives = 71/133 (53.38%), Query Frame = 1
Query:   10 DSYSSVVGGKLSLKTKSLFKGNKKRKAKKAEDGAGQSSEPAAXXXXXXXXXXXXXXXXXXRETEVDPDEFLTP------AQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 390
            D Y +V+GGKLSLK K +    KK K K+ +DG    ++                        +V+ D  L P      AQ ++++ K+ ++E  IK     T+R+R+EE++  L ++TEH+D+PR+SAAGNG
Sbjct:    2 DGYRNVMGGKLSLKAKGIPTKAKKSKKKRKDDGDEVHAKKRTSK-------------------KVEDDVVLVPITGKTAAQMKHEKFKSKREEDEIKKNASKTYRERVEEYSQYLGNLTEHHDVPRVSAAGNG 115          
BLAST of jgi.p|Trimin1|348567 vs. uniprot
Match: A0A7S2LCQ3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LCQ3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.280e-10
Identity = 31/62 (50.00%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  205 DPDEFLTPAQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 390
            D ++ LT A++   Q K  ++++ ++ +  M+HR+R+EEFNS LA +TEHNDIPR+SAAGNG
Sbjct:   47 DDNDDLTEAERSAMQFKKEKEKRDLEKVANMSHRERVEEFNSKLAELTEHNDIPRVSAAGNG 108          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348567 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CFW3_9STRA7.550e-63100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YYZ7_9STRA6.180e-2044.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FPR7_ECTSI5.050e-1460.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3LZW5_9STRA2.240e-1361.67Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482S2J5_9ARCH2.690e-1155.00Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A067C7L3_SAPPC8.610e-1136.23Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A3M6VP18_9STRA2.490e-1048.48Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A7S2H078_9STRA2.620e-1050.85Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1V9YXG3_9STRA3.640e-1033.83Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S2LCQ3_9STRA4.280e-1050.00Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_27contigContig_27:378727..379430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348567|estExt_Genemark1.C_Ctg_270041
BRITEko00000,ko03041
KEGG koko:K13120
Max annot lvl2836|Bacillariophyta
EggNOG OGs2CP1M@1|root,2QZD1@2759|Eukaryota,2XHHU@2836|Bacillariophyta
Evalue1.53e-11
Seed ortholog35128.Thaps5747
Hectar predicted targeting categoryother localisation
TranscriptId348889
TrackFilteredModels1
ProteinId348567
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348567gene_6918Tribonema minus UTEX_B_3156 geneContig_27 378727..379430 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6918_1exon_6918_1Tribonema minus UTEX_B_3156 exonContig_27 378727..379430 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6918CDS_6918Tribonema minus UTEX_B_3156 CDSContig_27 378727..379119 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6918UTR3_6918Tribonema minus UTEX_B_3156 three_prime_UTRContig_27 379120..379430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348567Trimin1|348567|estExt_Genemark1.C_Ctg_270041Tribonema minus UTEX_B_3156 polypeptideContig_27 378727..379119 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6918 ID=mRNA_6918|Name=jgi.p|Trimin1|348567|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=704bp|location=Sequence derived from alignment at Contig_27:378727..379430+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCCGACTCCTACAGCTCGGTAGTGGGCGGCAAGCTGTCTCTCAA
GACTAAGAGCCTGTTCAAGGGCAACAAGAAGCGCAAAGCAAAGAAGGCAG
AGGACGGTGCTGGACAAAGCAGTGAACCGGCGGCACCGGCGCAAGCAGCA
GCGCAGGAGGAGCAATCGGAGGGAAAGCAGAAGCAGCAGCGGGAGACGGA
GGTGGATCCCGATGAATTTTTGACCCCGGCGCAGAAGCGCTACAAGCAAC
AAAAAGCATCTCAGGATGAGAAGCGGATCAAGGCCATCGTTAAGATGACG
CACAGGGATCGGATAGAGGAGTTCAATTCCACGCTTGCCAGCATGACGGA
GCACAACGACATTCCGCGCATCAGTGCCGCAGGCAACGGCTAATGCACTT
GTGAGGTTACTAGGCTGCGGCTGGGGGGCGTGTTCAAAAAACATCGTGTG
AAATGGAGCTTGTGTCGAGAGCCGCAGTCAGCAGCAGCTCCTCCGGGGTG
CTTGCCCGCCGGAACTTTGCTGGCTCACATGTCAAGGGAGCTCAGATGTC
AAGCGAGCCGCATAAGTGAGAGCGTTGCACTCTGGGTGATCAGCTGCATC
AGCTCTTCAATACATCAGTCGTCATGGTTCAGCCGCATCAGCGGTGTACT
CACTGGAAACCTCGTGTAAATACATGCAACATACAAATGGCAGATCGTCC
CGAG
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protein sequence of jgi.p|Trimin1|348567

>Trimin1|348567|estExt_Genemark1.C_Ctg_270041 ID=Trimin1|348567|estExt_Genemark1.C_Ctg_270041|Name=jgi.p|Trimin1|348567|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=131bp
MVADSYSSVVGGKLSLKTKSLFKGNKKRKAKKAEDGAGQSSEPAAPAQAA
AQEEQSEGKQKQQRETEVDPDEFLTPAQKRYKQQKASQDEKRIKAIVKMT
HRDRIEEFNSTLASMTEHNDIPRISAAGNG*
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mRNA from alignment at Contig_27:378727..379430+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6918 ID=mRNA_6918|Name=jgi.p|Trimin1|348567|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=704bp|location=Sequence derived from alignment at Contig_27:378727..379430+ (Tribonema minus UTEX_B_3156 )
ATGGTGGCCGACTCCTACAGCTCGGTAGTGGGCGGCAAGCTGTCTCTCAA GACTAAGAGCCTGTTCAAGGGCAACAAGAAGCGCAAAGCAAAGAAGGCAG AGGACGGTGCTGGACAAAGCAGTGAACCGGCGGCACCGGCGCAAGCAGCA GCGCAGGAGGAGCAATCGGAGGGAAAGCAGAAGCAGCAGCGGGAGACGGA GGTGGATCCCGATGAATTTTTGACCCCGGCGCAGAAGCGCTACAAGCAAC AAAAAGCATCTCAGGATGAGAAGCGGATCAAGGCCATCGTTAAGATGACG CACAGGGATCGGATAGAGGAGTTCAATTCCACGCTTGCCAGCATGACGGA GCACAACGACATTCCGCGCATCAGTGCCGCAGGCAACGGCTAATGCACTT GTGAGGTTACTAGGCTGCGGCTGGGGGGCGTGTTCAAAAAACATCGTGTG AAATGGAGCTTGTGTCGAGAGCCGCAGTCAGCAGCAGCTCCTCCGGGGTG CTTGCCCGCCGGAACTTTGCTGGCTCACATGTCAAGGGAGCTCAGATGTC AAGCGAGCCGCATAAGTGAGAGCGTTGCACTCTGGGTGATCAGCTGCATC AGCTCTTCAATACATCAGTCGTCATGGTTCAGCCGCATCAGCGGTGTACT CACTGGAAACCTCGTGTAAATACATGCAACATACAAATGGCAGATCGTCC CGAG
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Coding sequence (CDS) from alignment at Contig_27:378727..379430+

>mRNA_6918 ID=mRNA_6918|Name=jgi.p|Trimin1|348567|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=393bp|location=Sequence derived from alignment at Contig_27:378727..379430+ (Tribonema minus UTEX_B_3156 )
ATGGTGGCCGACTCCTACAGCTCGGTAGTGGGCGGCAAGCTGTCTCTCAA
GACTAAGAGCCTGTTCAAGGGCAACAAGAAGCGCAAAGCAAAGAAGGCAG
AGGACGGTGCTGGACAAAGCAGTGAACCGGCGGCACCGGCGCAAGCAGCA
GCGCAGGAGGAGCAATCGGAGGGAAAGCAGAAGCAGCAGCGGGAGACGGA
GGTGGATCCCGATGAATTTTTGACCCCGGCGCAGAAGCGCTACAAGCAAC
AAAAAGCATCTCAGGATGAGAAGCGGATCAAGGCCATCGTTAAGATGACG
CACAGGGATCGGATAGAGGAGTTCAATTCCACGCTTGCCAGCATGACGGA
GCACAACGACATTCCGCGCATCAGTGCCGCAGGCAACGGCTAA
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