mRNA_6886 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163828
Unique NamemRNA_6886
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|163828 vs. uniprot
Match: A0A835Z124_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z124_9STRA)

HSP 1 Score: 307 bits (786), Expect = 5.060e-106
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1
Query:    1 MHAYSLLDLKEIDIGMDAPPAAGAVNGRVRLVRCRNPWGYGEWEGDWSDACDAEGTMSLREKYADRIAAAFDGGAAERTAINSGDGDFFISFRDWCANFTHLFIGIDFPDQGYTGQRAQGKWDLGCGGNRQASTTALLETLNMQ 432
            MHAYSLLDLKEIDIGMDAPPAAGAVNGRVRLVRCRNPWGYGEWEGDWSDACDAEGTMSLREKYADRIAAAFDGGAAERTAINSGDGDFFISFRDWCANFTHLFIGIDFPDQGYTGQRAQGKWDLGCGGNRQASTTALLETLNMQ
Sbjct:    1 MHAYSLLDLKEIDIGMDAPPAAGAVNGRVRLVRCRNPWGYGEWEGDWSDACDAEGTMSLREKYADRIAAAFDGGAAERTAINSGDGDFFISFRDWCANFTHLFIGIDFPDQGYTGQRAQGKWDLGCGGNRQASTTALLETLNMQ 144          
BLAST of jgi.p|Trimin1|163828 vs. uniprot
Match: A0A6G0WB43_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WB43_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.490e-20
Identity = 59/159 (37.11%), Postives = 78/159 (49.06%), Query Frame = 1
Query:    4 HAYSLLDLKEIDIGMDAPPAAGAVNGRV-RLVRCRNPWGYGEWEGDWSDACDAEGTMSLREKYADRIAAAF-----DGGA-------------------AERTAINSGDGDFFISFRDWCANFTHLFIGIDFPDQGYTGQRAQGKWDLGCGGNRQASTT 405
            HAY L+D+ EI++           N ++ RLV+ RNPWG GEW+G WSD  D       REKY   I   F     + GA                    E T +N+ DG FF+++ DW   +TH F GIDF D+ ++GQR  GKWD    G   + TT
Sbjct:  329 HAYGLIDVGEINLE----------NNKIQRLVKLRNPWGLGEWDGPWSDQSDE------REKYDSEIQRVFKTMSRNSGANVFTSLQRQRKLRLVMEPQVEVTEVNNNDGTFFMTYDDWRTRYTHFFAGIDFADE-WSGQRIDGKWDEVSNGGNVSKTT 470          
BLAST of jgi.p|Trimin1|163828 vs. uniprot
Match: A0A7S2RAM6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAM6_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.270e-19
Identity = 42/82 (51.22%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   88 RLVRCRNPWGYGEWEGDWSDACDAEGTMSLREKYADRIAAAFDGGAAERTAINSGDGDFFISFRDWCANFTHLFIGIDFPDQ 333
            RL R RNPWGYGEW G WSD  D+      R+ Y + I A F  GA E   IN  DG FF+ F DW A FTH+F+G+DF  +
Sbjct:    3 RLARLRNPWGYGEWIGPWSDDTDS---YPERDAYDEEIGARFRVGA-EAAEINRSDGTFFMKFEDWFARFTHVFVGVDFSSK 80          
BLAST of jgi.p|Trimin1|163828 vs. uniprot
Match: A0A482SZ25_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SZ25_9ARCH)

HSP 1 Score: 87.8 bits (216), Expect = 2.280e-17
Identity = 53/135 (39.26%), Postives = 71/135 (52.59%), Query Frame = 1
Query:    4 HAYSLLDLKEIDIGMDAPPAAGAVNGRVRLVRCRNPWGYGEWEGDWSDACDAEGTMSLREKYADRIAAAFDGGA--AERTAINSGDGDFFISFRDWCANFTHLFIGIDFPDQGYTGQRAQGKWDLGCGGNRQAST 402
            HAYSLL + EI +         + +G ++LV+ RNPWG GEWEG + D  D       REKY   I  AF+      E+   N  DG F + F DW   +T LF+ I+FP   + G+R QG +    GGNR+  T
Sbjct:  161 HAYSLLGIGEITVDKK-----DSKSGTMKLVKLRNPWGRGEWEGRFGDRSDE------REKYDSDIEKAFNATVRDVEKLTQNFNDGTFIMPFDDWLKYYTSLFVAINFPKT-WCGKRTQGVFSSEQGGNREMGT 283          
BLAST of jgi.p|Trimin1|163828 vs. uniprot
Match: A0A2R5FZ56_9STRA (Calpain n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FZ56_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.310e-15
Identity = 53/145 (36.55%), Postives = 69/145 (47.59%), Query Frame = 1
Query:    4 HAYSLLDLKEIDIGMDAPPAAGAVNGRVRLVRCRNPWGYGEWEGDWSDACDAEGTMSLREKYADRIAAAFDGGAAERTAI---------NSGDGDFFISFRDWCANFTHLFIGIDFPDQGYTGQRAQGKWDL---GCGGNRQAST 402
            HAY+L+D+  +    D         G V+LVR RNPWG+GEW G WSD    E   +L+      +   FD    ER  +         N+ DG FF+++ DW   FT  F  IDFPD+ + GQR  G W       GGN    T
Sbjct:  353 HAYALIDVGLVRTKDD---------GDVKLVRLRNPWGFGEWTGPWSDE-SPEFKRNLKA-----LQNVFDRPICERKGVPSTILPVNGNARDGTFFMTWEDWTRYFTVFFAAIDFPDK-WAGQRVTGAWTTKHSNAGGNHTCKT 481          
BLAST of jgi.p|Trimin1|163828 vs. uniprot
Match: A0A6S9I198_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9I198_HETAK)

HSP 1 Score: 77.4 bits (189), Expect = 8.640e-14
Identity = 49/138 (35.51%), Postives = 72/138 (52.17%), Query Frame = 1
Query:    4 HAYSLLDLKEIDIGMDAPPAAGAVNGRVRLVRCRNPWGYGEWEGDWSD-ACDAEGTMSLREKYADRIAAAFDGGAAERTAINSGDGDFFISFRDWCANFTHLFIGIDFPDQG----YTGQRAQGKWDLGCGGNRQAST 402
            HAY LL++  ++   DA   A A +  VRLVRCRNPWG GEW+G W+D A + E    ++E+          G    R      DG F+I + ++C  +  +F+ +DFP+ G    Y GQ   G    G GG+ + +T
Sbjct:  266 HAYGLLEM--VEAHQDATLQADARD--VRLVRCRNPWGMGEWKGPWADNAPEWEACPQIKERLV--------GAEGFRN-----DGCFWIEWEEFCREYNQVFVCVDFPEGGSGVRYRGQWVPGDGKSGAGGSPKYAT 386          
BLAST of jgi.p|Trimin1|163828 vs. uniprot
Match: A0A812CP81_SEPPH (CAPNN n=2 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812CP81_SEPPH)

HSP 1 Score: 70.5 bits (171), Expect = 2.320e-11
Identity = 42/128 (32.81%), Postives = 60/128 (46.88%), Query Frame = 1
Query:    4 HAYSLLDLKEIDIGMDAPPAAGAVNGRVRLVRCRNPWGYGEWEGDWSDACDAEGTMSLREKYADRIAAAFDGGAAERTAINSGDGDFFISFRDWCANFTHLFI---GIDFPDQGYTGQRAQGKWDLGC 378
            HAYS+   K +DI          V G++ +VR RNPWG  EW G WSD  +    +   EK              E   +N  DG+F++SF+D+C NF  L I     D  D+     R++ +W+  C
Sbjct:  258 HAYSITACKYVDI------QTPRVKGKIPMVRIRNPWGESEWNGPWSDQSEEWRFIPDEEKL-------------EIGLVNEEDGEFWMSFQDFCKNFKKLEICNLAPDSLDEEELNARSKKRWESTC 366          
BLAST of jgi.p|Trimin1|163828 vs. uniprot
Match: A0A822IIH0_9NEOB ((mimic poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822IIH0_9NEOB)

HSP 1 Score: 69.3 bits (168), Expect = 5.680e-11
Identity = 42/127 (33.07%), Postives = 63/127 (49.61%), Query Frame = 1
Query:    4 HAYSLLDLKEIDIGMDAPPAAGAVNGRVRLVRCRNPWGYGEWEGDWSDACDAEGTMSLREKYADRIAAAFDGGAAERTAINSGDGDFFISFRDWCANFTHL----FIGIDFPDQGYTGQR--AQGKW 366
            HAYS+ D+K++ +G +     G  + ++ ++R RNPWG  EW G W D  +    +S  EK    +A                DG+F+++F DWC NFTH      I   +  Q  T +R  A+GKW
Sbjct:  197 HAYSVTDIKKVSLG-EKTLCFGKTS-KLFMIRMRNPWGKREWRGAWHDESEEWKKVSKSEKGKLGLAV-------------RNDGEFWMTFEDWCNNFTHADVCRMINTSYLSQHKTWERGEARGKW 308          
BLAST of jgi.p|Trimin1|163828 vs. uniprot
Match: UPI001CF28B2A (calpain-6 n=2 Tax=Bufo TaxID=8383 RepID=UPI001CF28B2A)

HSP 1 Score: 69.3 bits (168), Expect = 5.760e-11
Identity = 41/127 (32.28%), Postives = 63/127 (49.61%), Query Frame = 1
Query:    4 HAYSLLDLKEIDIGMDAPPAAGAVNGRVRLVRCRNPWGYGEWEGDWSDACDAEGTMSLREKYADRIAAAFDGGAAERTAINSGDGDFFISFRDWCANFTHL----FIGIDFPDQGYTGQRAQ--GKW 366
            HAYS+ D+K++ +G +          ++ ++R RNPWG  EW G W+D  +    +S  EK           G    T  N  DG+F+++F DWC+NFTH      I   +  Q  T ++ +  GKW
Sbjct:  252 HAYSVTDIKKMTLGEET--LCFGKTTKLFMIRMRNPWGKREWRGTWNDESEEWKKVSKSEK-----------GKLGLTMQN--DGEFWMTFEDWCSNFTHADVCRMINTSYFSQHKTWEKGEDRGKW 363          
BLAST of jgi.p|Trimin1|163828 vs. uniprot
Match: S4RSU5_PETMA (Calpain-3 n=5 Tax=Petromyzon marinus TaxID=7757 RepID=S4RSU5_PETMA)

HSP 1 Score: 68.6 bits (166), Expect = 1.100e-10
Identity = 45/132 (34.09%), Postives = 63/132 (47.73%), Query Frame = 1
Query:    4 HAYSLLDLKEIDIGMDAPPAAGAVNGRVRLVRCRNPWGYGEWEGDWSDACDAEGTMSLREKYADRIAAAFDGGAAERTAINSGDGDFFISFRDWCANFTHLFIGIDFPD-------QGYTGQRAQGKWDLGC 378
            HAYS+  L E+                V+LVR RNPWG+ EW G WSDA      ++  EK   ++             I++ DG+F+ISF+D+C NFT L I    PD         +T   ++G+W  GC
Sbjct:  321 HAYSITGLDEVKHRSKI----------VQLVRLRNPWGHVEWIGPWSDASKEWNEITPSEKQRLQL-------------ISAEDGEFWISFQDFCRNFTKLEICNLSPDALADDRTNKWTVSVSEGRWVRGC 429          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163828 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z124_9STRA5.060e-106100.00Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A6G0WB43_9STRA2.490e-2037.11Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S2RAM6_9STRA1.270e-1951.22Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A482SZ25_9ARCH2.280e-1739.26Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A2R5FZ56_9STRA2.310e-1536.55Calpain n=1 Tax=Hondaea fermentalgiana TaxID=23152... [more]
A0A6S9I198_HETAK8.640e-1435.51Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A812CP81_SEPPH2.320e-1132.81CAPNN n=2 Tax=Sepia pharaonis TaxID=158019 RepID=A... [more]
A0A822IIH0_9NEOB5.680e-1133.07(mimic poison frog) hypothetical protein n=1 Tax=R... [more]
UPI001CF28B2A5.760e-1132.28calpain-6 n=2 Tax=Bufo TaxID=8383 RepID=UPI001CF28... [more]
S4RSU5_PETMA1.100e-1034.09Calpain-3 n=5 Tax=Petromyzon marinus TaxID=7757 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_27contigContig_27:179156..180504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163828|e_gw1.27.48.1
BRITEko00000,ko01000,ko01002
KEGG koko:K08574,ko:K08579
Descriptioncalcium-dependent cysteine-type endopeptidase activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0045@1|root,KOG0045@2759|Eukaryota
Evalue5.57e-21
Seed ortholog112098.XP_008604882.1
Hectar predicted targeting categoryother localisation
TranscriptId164150
TrackFilteredModels1
ProteinId163828
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163828gene_6886Tribonema minus UTEX_B_3156 geneContig_27 179156..180504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163828Trimin1|163828|e_gw1.27.48.1Tribonema minus UTEX_B_3156 polypeptideContig_27 179156..180504 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6886_2exon_6886_2Tribonema minus UTEX_B_3156 exonContig_27 179156..179464 -
exon_6886_1exon_6886_1Tribonema minus UTEX_B_3156 exonContig_27 180379..180504 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6886CDS_6886Tribonema minus UTEX_B_3156 CDSContig_27 180379..180504 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6886 ID=mRNA_6886|Name=jgi.p|Trimin1|163828|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=435bp|location=Sequence derived from alignment at Contig_27:179156..180504- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGCGTACTCTCTGCTGGACCTGAAGGAAATAGACATTGGTATGGA
TGCCCCACCTGCAGCCGGAGCTGTGAATGGGCGCGTGAGGCTTGTAAGAT
GCCGAAATCCATGGGGATATGGAGAGTGGGAGGGTGACTGGTCAGACGCA
TGCGATGCAGAAGGGACCATGTCCTTACGGGAGAAGTATGCTGACCGGAT
AGCAGCAGCATTTGACGGTGGCGCCGCAGAACGCACTGCAATCAATTCGG
GCGATGGCGACTTCTTCATTTCTTTCCGGGACTGGTGCGCCAACTTCACA
CACCTGTTCATCGGCATCGATTTTCCAGACCAAGGTTACACTGGCCAGCG
TGCTCAGGGGAAGTGGGATCTGGGTTGTGGCGGCAACCGACAGGCAAGTA
CAACTGCACTACTAGAGACCTTGAACATGCAATGA
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protein sequence of jgi.p|Trimin1|163828

>Trimin1|163828|e_gw1.27.48.1 ID=Trimin1|163828|e_gw1.27.48.1|Name=jgi.p|Trimin1|163828|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=145bp
MHAYSLLDLKEIDIGMDAPPAAGAVNGRVRLVRCRNPWGYGEWEGDWSDA
CDAEGTMSLREKYADRIAAAFDGGAAERTAINSGDGDFFISFRDWCANFT
HLFIGIDFPDQGYTGQRAQGKWDLGCGGNRQASTTALLETLNMQ*
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mRNA from alignment at Contig_27:179156..180504-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6886 ID=mRNA_6886|Name=jgi.p|Trimin1|163828|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1349bp|location=Sequence derived from alignment at Contig_27:179156..180504- (Tribonema minus UTEX_B_3156 )
ATGCATGCGTACTCTCTGCTGGACCTGAAGGAAATAGACATTGGTATGGA TGCCCCACCTGCAGCCGGAGCTGTGAATGGGCGCGTGAGGCTTGTAAGAT GCCGAAATCCATGGGGATATGGAGAGGTGAGTTCAGCTGAAGTGGTCTTT AAAGCCATGTTATGACCATTCACTAAAGAGAGATTAGTGATGTTACAGCT GTTCAGACCCTATCGCCATCGTAAAACTATGTGCGTTAAATTAACTTGGA CCCATTATTCTTGACAACATTTCTGTCAAGCTTTTTATGCAGTTGTTGAA GGATGTGGTTCTATGCACAAGCCGTGCTTATCATGGCTTACTGCTCATTC ATGTACATGCAGCTTACTCACAGCCCTTGTGCGCATCGATGATATTACTG CGGACCACTTCAAGCCTCTGCTGTCTCTGAGTGAGTCAAAATAACACAAG ATAAGACCAGAGATCATGGCAGAATGCACAGTGCTAAATTGCGGGCCATA AGCTCCGATAAAAAAAAACATTTGCCAGCAATTGATGTGATGTTGCGCAC AAAGTGGGCATGCATCCCATGCTGAAAGTGCTGCTGCCATGCTGTTTGCC TCTAAGGCATGCCAGCGCAATCCATTCTTTGTGTCTGATGCGCCATGTGG GCAGGCCACAGTATACTACTTCGAAGTATTCGTATACTCTGCAACATGCA ACAACTTTATCCTCCACTATATTTTCTGAAAAAGCTGGAGTTGAGTTTGT GTCGAATGTTGACGCCCAGCCGCTACCACGTGTAGCTAACAGTGGACCCA ATATGCGTTAGTCATCCGGACCTCTGAATGCACATGATCGTTTCAGGCAA CTTGTATGCTGTGAGACTTACGACAGTTCTCAACTTCCCATTCCGGCCCG CATATGTTGAACTCTGTGCCGGATACTTGTTCAGATGTGCACACATCTAC AATAAAACCACGAAGCAACATTGTGTTTCGAGGTGACCAAGAGATGAACC AATGTCATTGCACTATGCTCGACTGATTTATTTGATGCAGTGGGAGGGTG ACTGGTCAGACGCATGCGATGCAGAAGGGACCATGTCCTTACGGGAGAAG TATGCTGACCGGATAGCAGCAGCATTTGACGGTGGCGCCGCAGAACGCAC TGCAATCAATTCGGGCGATGGCGACTTCTTCATTTCTTTCCGGGACTGGT GCGCCAACTTCACACACCTGTTCATCGGCATCGATTTTCCAGACCAAGGT TACACTGGCCAGCGTGCTCAGGGGAAGTGGGATCTGGGTTGTGGCGGCAA CCGACAGGCAAGTACAACTGCACTACTAGAGACCTTGAACATGCAATGA
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Coding sequence (CDS) from alignment at Contig_27:179156..180504-

>mRNA_6886 ID=mRNA_6886|Name=jgi.p|Trimin1|163828|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=435bp|location=Sequence derived from alignment at Contig_27:179156..180504- (Tribonema minus UTEX_B_3156 )
ATGCATGCGTACTCTCTGCTGGACCTGAAGGAAATAGACATTGGTATGGA
TGCCCCACCTGCAGCCGGAGCTGTGAATGGGCGCGTGAGGCTTGTAAGAT
GCCGAAATCCATGGGGATATGGAGAGTGGGAGGGTGACTGGTCAGACGCA
TGCGATGCAGAAGGGACCATGTCCTTACGGGAGAAGTATGCTGACCGGAT
AGCAGCAGCATTTGACGGTGGCGCCGCAGAACGCACTGCAATCAATTCGG
GCGATGGCGACTTCTTCATTTCTTTCCGGGACTGGTGCGCCAACTTCACA
CACCTGTTCATCGGCATCGATTTTCCAGACCAAGGTTACACTGGCCAGCG
TGCTCAGGGGAAGTGGGATCTGGGTTGTGGCGGCAACCGACAGGCAAGTA
CAACTGCACTACTAGAGACCTTGAACATGCAATGA
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