mRNA_6886 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|163828 vs. uniprot
Match: A0A835Z124_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z124_9STRA) HSP 1 Score: 307 bits (786), Expect = 5.060e-106 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 Query: 1 MHAYSLLDLKEIDIGMDAPPAAGAVNGRVRLVRCRNPWGYGEWEGDWSDACDAEGTMSLREKYADRIAAAFDGGAAERTAINSGDGDFFISFRDWCANFTHLFIGIDFPDQGYTGQRAQGKWDLGCGGNRQASTTALLETLNMQ 432 MHAYSLLDLKEIDIGMDAPPAAGAVNGRVRLVRCRNPWGYGEWEGDWSDACDAEGTMSLREKYADRIAAAFDGGAAERTAINSGDGDFFISFRDWCANFTHLFIGIDFPDQGYTGQRAQGKWDLGCGGNRQASTTALLETLNMQ Sbjct: 1 MHAYSLLDLKEIDIGMDAPPAAGAVNGRVRLVRCRNPWGYGEWEGDWSDACDAEGTMSLREKYADRIAAAFDGGAAERTAINSGDGDFFISFRDWCANFTHLFIGIDFPDQGYTGQRAQGKWDLGCGGNRQASTTALLETLNMQ 144
BLAST of jgi.p|Trimin1|163828 vs. uniprot
Match: A0A6G0WB43_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WB43_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 2.490e-20 Identity = 59/159 (37.11%), Postives = 78/159 (49.06%), Query Frame = 1 Query: 4 HAYSLLDLKEIDIGMDAPPAAGAVNGRV-RLVRCRNPWGYGEWEGDWSDACDAEGTMSLREKYADRIAAAF-----DGGA-------------------AERTAINSGDGDFFISFRDWCANFTHLFIGIDFPDQGYTGQRAQGKWDLGCGGNRQASTT 405 HAY L+D+ EI++ N ++ RLV+ RNPWG GEW+G WSD D REKY I F + GA E T +N+ DG FF+++ DW +TH F GIDF D+ ++GQR GKWD G + TT Sbjct: 329 HAYGLIDVGEINLE----------NNKIQRLVKLRNPWGLGEWDGPWSDQSDE------REKYDSEIQRVFKTMSRNSGANVFTSLQRQRKLRLVMEPQVEVTEVNNNDGTFFMTYDDWRTRYTHFFAGIDFADE-WSGQRIDGKWDEVSNGGNVSKTT 470
BLAST of jgi.p|Trimin1|163828 vs. uniprot
Match: A0A7S2RAM6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAM6_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.270e-19 Identity = 42/82 (51.22%), Postives = 50/82 (60.98%), Query Frame = 1 Query: 88 RLVRCRNPWGYGEWEGDWSDACDAEGTMSLREKYADRIAAAFDGGAAERTAINSGDGDFFISFRDWCANFTHLFIGIDFPDQ 333 RL R RNPWGYGEW G WSD D+ R+ Y + I A F GA E IN DG FF+ F DW A FTH+F+G+DF + Sbjct: 3 RLARLRNPWGYGEWIGPWSDDTDS---YPERDAYDEEIGARFRVGA-EAAEINRSDGTFFMKFEDWFARFTHVFVGVDFSSK 80
BLAST of jgi.p|Trimin1|163828 vs. uniprot
Match: A0A482SZ25_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SZ25_9ARCH) HSP 1 Score: 87.8 bits (216), Expect = 2.280e-17 Identity = 53/135 (39.26%), Postives = 71/135 (52.59%), Query Frame = 1 Query: 4 HAYSLLDLKEIDIGMDAPPAAGAVNGRVRLVRCRNPWGYGEWEGDWSDACDAEGTMSLREKYADRIAAAFDGGA--AERTAINSGDGDFFISFRDWCANFTHLFIGIDFPDQGYTGQRAQGKWDLGCGGNRQAST 402 HAYSLL + EI + + +G ++LV+ RNPWG GEWEG + D D REKY I AF+ E+ N DG F + F DW +T LF+ I+FP + G+R QG + GGNR+ T Sbjct: 161 HAYSLLGIGEITVDKK-----DSKSGTMKLVKLRNPWGRGEWEGRFGDRSDE------REKYDSDIEKAFNATVRDVEKLTQNFNDGTFIMPFDDWLKYYTSLFVAINFPKT-WCGKRTQGVFSSEQGGNREMGT 283
BLAST of jgi.p|Trimin1|163828 vs. uniprot
Match: A0A2R5FZ56_9STRA (Calpain n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FZ56_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 2.310e-15 Identity = 53/145 (36.55%), Postives = 69/145 (47.59%), Query Frame = 1 Query: 4 HAYSLLDLKEIDIGMDAPPAAGAVNGRVRLVRCRNPWGYGEWEGDWSDACDAEGTMSLREKYADRIAAAFDGGAAERTAI---------NSGDGDFFISFRDWCANFTHLFIGIDFPDQGYTGQRAQGKWDL---GCGGNRQAST 402 HAY+L+D+ + D G V+LVR RNPWG+GEW G WSD E +L+ + FD ER + N+ DG FF+++ DW FT F IDFPD+ + GQR G W GGN T Sbjct: 353 HAYALIDVGLVRTKDD---------GDVKLVRLRNPWGFGEWTGPWSDE-SPEFKRNLKA-----LQNVFDRPICERKGVPSTILPVNGNARDGTFFMTWEDWTRYFTVFFAAIDFPDK-WAGQRVTGAWTTKHSNAGGNHTCKT 481
BLAST of jgi.p|Trimin1|163828 vs. uniprot
Match: A0A6S9I198_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9I198_HETAK) HSP 1 Score: 77.4 bits (189), Expect = 8.640e-14 Identity = 49/138 (35.51%), Postives = 72/138 (52.17%), Query Frame = 1 Query: 4 HAYSLLDLKEIDIGMDAPPAAGAVNGRVRLVRCRNPWGYGEWEGDWSD-ACDAEGTMSLREKYADRIAAAFDGGAAERTAINSGDGDFFISFRDWCANFTHLFIGIDFPDQG----YTGQRAQGKWDLGCGGNRQAST 402 HAY LL++ ++ DA A A + VRLVRCRNPWG GEW+G W+D A + E ++E+ G R DG F+I + ++C + +F+ +DFP+ G Y GQ G G GG+ + +T Sbjct: 266 HAYGLLEM--VEAHQDATLQADARD--VRLVRCRNPWGMGEWKGPWADNAPEWEACPQIKERLV--------GAEGFRN-----DGCFWIEWEEFCREYNQVFVCVDFPEGGSGVRYRGQWVPGDGKSGAGGSPKYAT 386
BLAST of jgi.p|Trimin1|163828 vs. uniprot
Match: A0A812CP81_SEPPH (CAPNN n=2 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812CP81_SEPPH) HSP 1 Score: 70.5 bits (171), Expect = 2.320e-11 Identity = 42/128 (32.81%), Postives = 60/128 (46.88%), Query Frame = 1 Query: 4 HAYSLLDLKEIDIGMDAPPAAGAVNGRVRLVRCRNPWGYGEWEGDWSDACDAEGTMSLREKYADRIAAAFDGGAAERTAINSGDGDFFISFRDWCANFTHLFI---GIDFPDQGYTGQRAQGKWDLGC 378 HAYS+ K +DI V G++ +VR RNPWG EW G WSD + + EK E +N DG+F++SF+D+C NF L I D D+ R++ +W+ C Sbjct: 258 HAYSITACKYVDI------QTPRVKGKIPMVRIRNPWGESEWNGPWSDQSEEWRFIPDEEKL-------------EIGLVNEEDGEFWMSFQDFCKNFKKLEICNLAPDSLDEEELNARSKKRWESTC 366
BLAST of jgi.p|Trimin1|163828 vs. uniprot
Match: A0A822IIH0_9NEOB ((mimic poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822IIH0_9NEOB) HSP 1 Score: 69.3 bits (168), Expect = 5.680e-11 Identity = 42/127 (33.07%), Postives = 63/127 (49.61%), Query Frame = 1 Query: 4 HAYSLLDLKEIDIGMDAPPAAGAVNGRVRLVRCRNPWGYGEWEGDWSDACDAEGTMSLREKYADRIAAAFDGGAAERTAINSGDGDFFISFRDWCANFTHL----FIGIDFPDQGYTGQR--AQGKW 366 HAYS+ D+K++ +G + G + ++ ++R RNPWG EW G W D + +S EK +A DG+F+++F DWC NFTH I + Q T +R A+GKW Sbjct: 197 HAYSVTDIKKVSLG-EKTLCFGKTS-KLFMIRMRNPWGKREWRGAWHDESEEWKKVSKSEKGKLGLAV-------------RNDGEFWMTFEDWCNNFTHADVCRMINTSYLSQHKTWERGEARGKW 308
BLAST of jgi.p|Trimin1|163828 vs. uniprot
Match: UPI001CF28B2A (calpain-6 n=2 Tax=Bufo TaxID=8383 RepID=UPI001CF28B2A) HSP 1 Score: 69.3 bits (168), Expect = 5.760e-11 Identity = 41/127 (32.28%), Postives = 63/127 (49.61%), Query Frame = 1 Query: 4 HAYSLLDLKEIDIGMDAPPAAGAVNGRVRLVRCRNPWGYGEWEGDWSDACDAEGTMSLREKYADRIAAAFDGGAAERTAINSGDGDFFISFRDWCANFTHL----FIGIDFPDQGYTGQRAQ--GKW 366 HAYS+ D+K++ +G + ++ ++R RNPWG EW G W+D + +S EK G T N DG+F+++F DWC+NFTH I + Q T ++ + GKW Sbjct: 252 HAYSVTDIKKMTLGEET--LCFGKTTKLFMIRMRNPWGKREWRGTWNDESEEWKKVSKSEK-----------GKLGLTMQN--DGEFWMTFEDWCSNFTHADVCRMINTSYFSQHKTWEKGEDRGKW 363
BLAST of jgi.p|Trimin1|163828 vs. uniprot
Match: S4RSU5_PETMA (Calpain-3 n=5 Tax=Petromyzon marinus TaxID=7757 RepID=S4RSU5_PETMA) HSP 1 Score: 68.6 bits (166), Expect = 1.100e-10 Identity = 45/132 (34.09%), Postives = 63/132 (47.73%), Query Frame = 1 Query: 4 HAYSLLDLKEIDIGMDAPPAAGAVNGRVRLVRCRNPWGYGEWEGDWSDACDAEGTMSLREKYADRIAAAFDGGAAERTAINSGDGDFFISFRDWCANFTHLFIGIDFPD-------QGYTGQRAQGKWDLGC 378 HAYS+ L E+ V+LVR RNPWG+ EW G WSDA ++ EK ++ I++ DG+F+ISF+D+C NFT L I PD +T ++G+W GC Sbjct: 321 HAYSITGLDEVKHRSKI----------VQLVRLRNPWGHVEWIGPWSDASKEWNEITPSEKQRLQL-------------ISAEDGEFWISFQDFCRNFTKLEICNLSPDALADDRTNKWTVSVSEGRWVRGC 429 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163828 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6886 ID=mRNA_6886|Name=jgi.p|Trimin1|163828|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=435bp|location=Sequence derived from alignment at Contig_27:179156..180504- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCATGCGTACTCTCTGCTGGACCTGAAGGAAATAGACATTGGTATGGAback to top protein sequence of jgi.p|Trimin1|163828 >Trimin1|163828|e_gw1.27.48.1 ID=Trimin1|163828|e_gw1.27.48.1|Name=jgi.p|Trimin1|163828|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=145bp MHAYSLLDLKEIDIGMDAPPAAGAVNGRVRLVRCRNPWGYGEWEGDWSDAback to top mRNA from alignment at Contig_27:179156..180504- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6886 ID=mRNA_6886|Name=jgi.p|Trimin1|163828|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1349bp|location=Sequence derived from alignment at Contig_27:179156..180504- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_27:179156..180504- >mRNA_6886 ID=mRNA_6886|Name=jgi.p|Trimin1|163828|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=435bp|location=Sequence derived from alignment at Contig_27:179156..180504- (Tribonema minus UTEX_B_3156 )back to top |