mRNA_6884 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163719
Unique NamemRNA_6884
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|163719 vs. uniprot
Match: A0A835Z280_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z280_9STRA)

HSP 1 Score: 355 bits (911), Expect = 5.960e-124
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1 
Query:    1 MGHNATTRRLRGCWGFDAIRAIDQDDPALVLRAYKLPFADVDHVVQKHLYGDYAFTQRMDLHEGDTALHLALKWRKMRAAKALLHLNARWDIVNAQGVTAEAILMKEHLKPMLTLKAQQEREYATQAMACEDDLMHTLLAHEQSMQQAMSADKLRQLNELRTAGAAQEAMLLMMAGRIM 537
            MGHNATTRRLRGCWGFDAIRAIDQDDPALVLRAYKLPFADVDHVVQKHLYGDYAFTQRMDLHEGDTALHLALKWRKMRAAKALLHLNARWDIVNAQGVTAEAILMKEHLKPMLTLKAQQEREYATQAMACEDDLMHTLLAHEQSMQQAMSADKLRQLNELRTAGAAQEAMLLMMAGRIM
Sbjct:    1 MGHNATTRRLRGCWGFDAIRAIDQDDPALVLRAYKLPFADVDHVVQKHLYGDYAFTQRMDLHEGDTALHLALKWRKMRAAKALLHLNARWDIVNAQGVTAEAILMKEHLKPMLTLKAQQEREYATQAMACEDDLMHTLLAHEQSMQQAMSADKLRQLNELRTAGAAQEAMLLMMAGRIM 179
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BLAST of jgi.p|Trimin1|163719 vs. uniprot
Match: D7FH33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH33_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.260e-36
Identity = 78/180 (43.33%), Postives = 109/180 (60.56%), Query Frame = 1 
Query:    7 HNATTRRLRGCWGFDAIRAIDQDDPALVLRAYKLP----FADVDHVVQKHLYGDYAFTQRMDLHEGDTALHLALKWRKMRAAKALLHLNARWDIVNAQGVTAEAILMKEHLKPMLTLKAQQEREYATQAMACEDDLMHTLLAHEQSMQQAMSADKLRQLNELRTAGAAQEAMLLMMAGRI 534
            H+  TR+ R  WG++ IR ID+DDP  V+RA++ P    F D++  V+   YG YA+TQ M  H GDTALH+ALKW++ RA KA+L L   W I N  GVTAE ++++ + K M   K +QEREY   AM  E++ M  L+A EQ+ +     D L   +  RT G   EA +L+  GR+
Sbjct:    2 HSLWTRKTR-TWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLNTQVEID-YGGYAWTQWMHRHFGDTALHIALKWKRYRAVKAILSLRPNWTIPNEAGVTAEQLVLRLYGKSMARFKDEQEREYENDAMRAEEEAMRNLMAAEQAARDKARLDFLEAQHAARTIGIDHEAAILLEHGRV 179
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BLAST of jgi.p|Trimin1|163719 vs. uniprot
Match: A0A7S3M322_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M322_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.480e-9
Identity = 37/92 (40.22%), Postives = 49/92 (53.26%), Query Frame = 1 
Query:   40 WGFDAIRAIDQDDPALVLRAYKLPFADVDHVVQKHLYGDYAFTQRMDLHEGDTALHLALKWRKMRAAKALLHLNARWDIVNAQGVTAEAILM 315
            WG   ++AIDQDD   V    K    D+D  +    Y  Y +T +   + GDTALHLA++ +KM     LL L AR DI NA G+T   + M
Sbjct:   24 WGRALLQAIDQDDCIAVYECSKREGFDIDTQITILGYAQYLWTCQFHKYLGDTALHLAIRQKKMMCVHMLLLLKARTDIPNAAGITGNDLCM 115
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163719 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z280_9STRA5.960e-124100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7FH33_ECTSI1.260e-3643.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3M322_9STRA3.480e-940.22Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_27contigContig_27:146348..147421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163719|e_gw1.27.138.1
Hectar predicted targeting categoryother localisation
TranscriptId164041
TrackFilteredModels1
ProteinId163719
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163719gene_6884Tribonema minus UTEX_B_3156 geneContig_27 146348..147421 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6884_1exon_6884_1Tribonema minus UTEX_B_3156 exonContig_27 146348..146636 +
exon_6884_2exon_6884_2Tribonema minus UTEX_B_3156 exonContig_27 147174..147421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6884CDS_6884Tribonema minus UTEX_B_3156 CDSContig_27 146348..146636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163719Trimin1|163719|e_gw1.27.138.1Tribonema minus UTEX_B_3156 polypeptideContig_27 146348..147421 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6884 ID=mRNA_6884|Name=jgi.p|Trimin1|163719|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=537bp|location=Sequence derived from alignment at Contig_27:146348..147421+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCATAATGCTACTACCAGGAGGTTGCGAGGCTGCTGGGGTTTTGA
CGCAATTCGTGCCATCGATCAGGATGATCCAGCGCTGGTGCTACGCGCCT
ACAAATTACCCTTCGCAGACGTAGATCATGTGGTGCAGAAGCACCTGTAC
GGGGACTACGCGTTTACTCAGCGGATGGACCTACATGAGGGAGACACCGC
TTTGCATTTGGCCTTGAAATGGAGGAAGATGAGGGCTGCGAAGGCGCTGC
TGCACCTGAACGCTCGCTGGGATATCGTCAATGCACAAGGTGTCACAGCA
GAAGCTATACTCATGAAGGAGCACTTGAAGCCCATGCTCACGCTCAAGGC
GCAGCAGGAAAGGGAGTACGCAACTCAGGCAATGGCATGCGAGGATGATC
TGATGCACACTCTGCTGGCGCATGAGCAAAGCATGCAGCAAGCCATGTCA
GCCGACAAGCTGCGGCAGCTGAATGAGCTGCGCACAGCAGGCGCGGCTCA
GGAGGCTATGCTGCTCATGATGGCTGGGAGGATTATG
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protein sequence of jgi.p|Trimin1|163719

>Trimin1|163719|e_gw1.27.138.1 ID=Trimin1|163719|e_gw1.27.138.1|Name=jgi.p|Trimin1|163719|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=179bp
MGHNATTRRLRGCWGFDAIRAIDQDDPALVLRAYKLPFADVDHVVQKHLY
GDYAFTQRMDLHEGDTALHLALKWRKMRAAKALLHLNARWDIVNAQGVTA
EAILMKEHLKPMLTLKAQQEREYATQAMACEDDLMHTLLAHEQSMQQAMS
ADKLRQLNELRTAGAAQEAMLLMMAGRIM
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mRNA from alignment at Contig_27:146348..147421+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6884 ID=mRNA_6884|Name=jgi.p|Trimin1|163719|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1074bp|location=Sequence derived from alignment at Contig_27:146348..147421+ (Tribonema minus UTEX_B_3156 )
ATGGGGCATAATGCTACTACCAGGAGGTTGCGAGGCTGCTGGGGTTTTGA
CGCAATTCGTGCCATCGATCAGGATGATCCAGCGCTGGTGCTACGCGCCT
ACAAATTACCCTTCGCAGACGTAGATCATGTGGTGCAGAAGCACCTGTAC
GGGGACTACGCGTTTACTCAGCGGATGGACCTACATGAGGGAGACACCGC
TTTGCATTTGGCCTTGAAATGGAGGAAGATGAGGGCTGCGAAGGCGCTGC
TGCACCTGAACGCTCGCTGGGATATCGTCAATGCACAAGGTAATTGCAGA
TGTAAAGAAGTGCTGCGAGTGATGATCCGAAATCGCAAGTCACGGCGCGC
TCCTTATATGGGATCCTCACAACGCCATCTTTGAGCTCCACGGCACATGA
ACAGCCGATGCTCGTCACTGCATGATTGAGCGGCATCAACAGATTCGATT
GATTGTGGCTGTCCTGGACCTGCGGGCGATTGCAATGCAGAGCAAACTGC
GATGCAGAACAAAGTGAACCAGCTGATTCAGCACCTCAAACTATAAAGCC
TATGTAGCAGAACTGTTATGTGTCCTACAAACACAAGGCAGACACACCTA
TCAACGATGTCATGTGCATACGGCTACCTTGTCCGAGAGTCTTTGTGTGC
ATTCCCCTATACTGGTGAGGGCAACCCAGAACTGTGTCCTCTTTGAAAGA
AACAGTGTTGAGCGAATAATTATTTGGTACTATGAGCTACATACCATATG
AAGACATTGAATGCAGACATGCGCCACCTCCGTTTACATGCCTGTTGACT
GGTGCATACCATCACCGCTGTTGCAGGTGTCACAGCAGAAGCTATACTCA
TGAAGGAGCACTTGAAGCCCATGCTCACGCTCAAGGCGCAGCAGGAAAGG
GAGTACGCAACTCAGGCAATGGCATGCGAGGATGATCTGATGCACACTCT
GCTGGCGCATGAGCAAAGCATGCAGCAAGCCATGTCAGCCGACAAGCTGC
GGCAGCTGAATGAGCTGCGCACAGCAGGCGCGGCTCAGGAGGCTATGCTG
CTCATGATGGCTGGGAGGATTATG
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Coding sequence (CDS) from alignment at Contig_27:146348..147421+

>mRNA_6884 ID=mRNA_6884|Name=jgi.p|Trimin1|163719|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=537bp|location=Sequence derived from alignment at Contig_27:146348..147421+ (Tribonema minus UTEX_B_3156 )
ATGGGGCATAATGCTACTACCAGGAGGTTGCGAGGCTGCTGGGGTTTTGA
CGCAATTCGTGCCATCGATCAGGATGATCCAGCGCTGGTGCTACGCGCCT
ACAAATTACCCTTCGCAGACGTAGATCATGTGGTGCAGAAGCACCTGTAC
GGGGACTACGCGTTTACTCAGCGGATGGACCTACATGAGGGAGACACCGC
TTTGCATTTGGCCTTGAAATGGAGGAAGATGAGGGCTGCGAAGGCGCTGC
TGCACCTGAACGCTCGCTGGGATATCGTCAATGCACAAGGTGTCACAGCA
GAAGCTATACTCATGAAGGAGCACTTGAAGCCCATGCTCACGCTCAAGGC
GCAGCAGGAAAGGGAGTACGCAACTCAGGCAATGGCATGCGAGGATGATC
TGATGCACACTCTGCTGGCGCATGAGCAAAGCATGCAGCAAGCCATGTCA
GCCGACAAGCTGCGGCAGCTGAATGAGCTGCGCACAGCAGGCGCGGCTCA
GGAGGCTATGCTGCTCATGATGGCTGGGAGGATTATG
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