mRNA_686 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154599
Unique NamemRNA_686
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|154599 vs. uniprot
Match: A0A835Z3W3_9STRA (SET domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3W3_9STRA)

HSP 1 Score: 233 bits (593), Expect = 1.330e-77
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 
Query:    1 GLRVRQSTVPIAGYGLFATAKMPQGETVDVYAGKVAAFVNDAEGDYLISVKDVHTIDARARQSCIARYINHSDHNANCRFVYFESPGKHMHVIVQTIHDVQKDEELFVDYGPL 339
            GLRVRQSTVPIAGYGLFATAKMPQGETVDVYAGKVAAFVNDAEGDYLISVKDVHTIDARARQSCIARYINHSDHNANCRFVYFESPGKHMHVIVQTIHDVQKDEELFVDYGPL
Sbjct:    1 GLRVRQSTVPIAGYGLFATAKMPQGETVDVYAGKVAAFVNDAEGDYLISVKDVHTIDARARQSCIARYINHSDHNANCRFVYFESPGKHMHVIVQTIHDVQKDEELFVDYGPL 113
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BLAST of jgi.p|Trimin1|154599 vs. uniprot
Match: H3GV72_PHYRM (SET domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GV72_PHYRM)

HSP 1 Score: 64.7 bits (156), Expect = 8.150e-11
Identity = 43/116 (37.07%), Postives = 59/116 (50.86%), Query Frame = 1 
Query:    1 GLRVRQSTVPIAGYGLFATAKMPQGETVDVYAGKVAAFVND---AEGDYLISVKDVHTIDARARQSCIARYINHSDHNANCRFVYFESPGKHMHVIVQTIHDVQKDEELFVDYGPL 339
            G+ VR ST+P AG GLFAT K PQG  V  Y G V          +  +L+ + D   IDA      +ARYIN    +     V+F+   +    +V  + D++  EE+FVDYG L
Sbjct:   18 GVEVRDSTIPGAGKGLFATRKHPQGSIVCEYTGVVLPNREAWKLPDKSFLMKLGDGKYIDALNCPEVLARYINDCRGHRGGFNVHFDKRPQEDKALVVAMRDIRLGEEIFVDYGRL 133
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BLAST of jgi.p|Trimin1|154599 vs. uniprot
Match: G4ZS13_PHYSP (SET domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZS13_PHYSP)

HSP 1 Score: 60.5 bits (145), Expect = 2.690e-9
Identity = 41/116 (35.34%), Postives = 56/116 (48.28%), Query Frame = 1 
Query:    1 GLRVRQSTVPIAGYGLFATAKMPQGETVDVYAGKVAAFVND---AEGDYLISVKDVHTIDARARQSCIARYINHSDHNANCRFVYFESPGKHMHVIVQTIHDVQKDEELFVDYGPL 339
            G+ VR+S +P AG GLFAT    +G TV +Y G V          +  YL+ + D   +DA      +ARYIN    +     V F+         V  + D+Q  EEL+VDYG L
Sbjct:    5 GVEVRESNIPGAGKGLFATRLHAEGSTVCIYTGVVLPNQQAWKLPDKSYLMKLGDGKYVDALNCPEVLARYINDCRGHRGGFNVRFDKRPHDDRADVVAVRDIQPGEELYVDYGRL 120
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BLAST of jgi.p|Trimin1|154599 vs. uniprot
Match: A0A4Q3SG05_9BACT (SET domain-containing protein n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A4Q3SG05_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 1.120e-8
Identity = 38/117 (32.48%), Postives = 61/117 (52.14%), Query Frame = 1 
Query:    4 LRVRQSTVPIAGYGLFATAKMPQGETVDVYAGKVAAFVNDAE-----GDYLISVKDVHTIDARARQSCIARYINHSDHNANCRFVYFESPGKH--MHVIVQTIHDVQKDEELFVDYG 333
            L+V+ ST+P AG GLF T  +P+G  +  Y GK++++  DA+       Y+  VK  H IDA  R   +ARY N +      + +   S      + V +++  D+  + E+FV YG
Sbjct:    8 LKVKHSTLPGAGKGLFTTKFIPKGTRIVEYKGKISSW-KDADHQNGGNGYIYYVKRYHVIDALPRPKALARYANDARGMTKIKGITNNSDYVEDGLRVFIESKKDIPANSEIFVAYG 123
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BLAST of jgi.p|Trimin1|154599 vs. uniprot
Match: A0A2P4Y5G8_9STRA (SET domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y5G8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.950e-8
Identity = 40/116 (34.48%), Postives = 59/116 (50.86%), Query Frame = 1 
Query:    1 GLRVRQSTVPIAGYGLFATAKMPQGETVDVYAGKVA---AFVNDAEGDYLISVKDVHTIDARARQSCIARYINHSDHNANCRFVYFESPGKHMHVIVQTIHDVQKDEELFVDYGPL 339
            GL VR S +P AG GLFAT    +G T+  Y+G V    A +   +  YL+ + +   +DA      +ARYIN    +     V+F+   +     V  + D+Q  EEL+V+YG L
Sbjct:   23 GLEVRDSKIPGAGKGLFATKHYARGSTICEYSGVVLPNEAALKLKDKSYLMKLGNGVYVDALHCPDVLARYINDCRGHRGGFNVHFQKRPEDGKADVVAMRDIQPGEELYVNYGRL 138
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BLAST of jgi.p|Trimin1|154599 vs. uniprot
Match: A0A225V8E0_9STRA (SET domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V8E0_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.810e-8
Identity = 40/118 (33.90%), Postives = 59/118 (50.00%), Query Frame = 1 
Query:    1 GLRVRQSTVPIAGYGLFATAKMPQGETVDVYAGKVAAFVNDA-----EGDYLISVKDVHTIDARARQSCIARYINHSDHNANCRFVYFESPGKHMHVIVQTIHDVQKDEELFVDYGPL 339
            GL VR S +P AG GLFAT    +G T+  Y+G V    N+A     +  YL+ + D   +DA      +ARYIN          V+F+   +     +  + D++  EEL+V+YG L
Sbjct:   23 GLEVRDSKIPGAGKGLFATKLHARGSTICEYSGVVLP--NEAAWKLKDKSYLMKLGDGVYVDALQCPDVLARYINDCRGRRGGFNVHFQKRPRDGRADIVAMRDIKPGEELYVNYGRL 138
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BLAST of jgi.p|Trimin1|154599 vs. uniprot
Match: M4C385_HYAAE (SET domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C385_HYAAE)

HSP 1 Score: 54.7 bits (130), Expect = 6.620e-7
Identity = 38/117 (32.48%), Postives = 55/117 (47.01%), Query Frame = 1 
Query:    1 GLRVRQSTVPIAGYGLFATAKMPQGETVDVYAGKVAAFVNDA----EGDYLISVKDVHTIDARARQSCIARYINHSDHNANCRFVYFESPGKHMHVIVQTIHDVQKDEELFVDYGPL 339
            GL VR+S +P AG GLFAT +  +G  +  Y G V      A    +  YL+ + D   +D       +ARYIN          V+F+         V  + D++  EEL+V+YG L
Sbjct:   26 GLEVRESNIPRAGKGLFATKRHLKGSVICEYTGVVLHSQEAAWKLKDKSYLMKLGDGKYVDTLHCPHVLARYINDCRGRFGGFNVHFDKRPDDNKANVVAMRDIEPGEELYVNYGRL 142
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BLAST of jgi.p|Trimin1|154599 vs. uniprot
Match: A0A433DDW9_9FUNG (SET domain-containing protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DDW9_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 1.450e-6
Identity = 42/122 (34.43%), Postives = 61/122 (50.00%), Query Frame = 1 
Query:    7 RVRQSTVPIAGYGLFATAKMPQGETVDVYAGKV---------AAFVNDAEGD-YLISVKDV---HTIDARARQSCIARYINHSDHNANCRFVYFESPGKHMHVIVQTIHDVQKDEELFVDYG 333
            RV  ST+P AG+GLFAT  + +GE V  Y G++          A  +   GD YL  + D+   + +DA  R     R+INH   N NC        G+H  + +  I D++  +ELF +YG
Sbjct:  516 RVGVSTIPQAGWGLFATEDVARGELVGEYVGEIITDGEVERRGAIYDKGGGDGYLNCIFDLNRDYAVDA-TRMGNKIRFINHDALNPNCAPQVKMVNGEHR-IGLYAIRDIKPGDELFFNYG 635
[Close]
BLAST of jgi.p|Trimin1|154599 vs. uniprot
Match: UPI001F117683 (SET domain-containing protein n=1 Tax=Niabella ginsengisoli TaxID=522298 RepID=UPI001F117683)

HSP 1 Score: 52.4 bits (124), Expect = 6.510e-6
Identity = 33/118 (27.97%), Postives = 56/118 (47.46%), Query Frame = 1 
Query:    4 LRVRQSTVPIAGYGLFATAKMPQGETVDVYAGKVAAFV---NDAEGDYLISVKDVHTIDARARQSCIARYINHSDHNANCRFV-----YFESPGKHMHVIVQTIHDVQKDEELFVDYG 333
            L+V+ ST+P +G GLF    +P+G  +  Y G+ A +    +DA+  Y+  + D + IDA      + RY N +      R +     Y E   +   V ++   ++    E+FV YG
Sbjct:    8 LKVKASTIPQSGKGLFIAVDVPKGSVITEYIGRRATWAEVEDDADNPYIYYIDDENVIDASKDLKSLGRYANDAAGLTRVRGLKNNAEYHEEDNR---VFIKAKANIPAGSEIFVSYG 122
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BLAST of jgi.p|Trimin1|154599 vs. uniprot
Match: UPI000E0BB9A4 (SET domain-containing protein n=1 Tax=Niabella yanshanensis TaxID=577386 RepID=UPI000E0BB9A4)

HSP 1 Score: 51.2 bits (121), Expect = 1.110e-5
Identity = 34/122 (27.87%), Postives = 58/122 (47.54%), Query Frame = 1 
Query:    4 LRVRQSTVPIAGYGLFATAKMPQGETVDVYAGKVAAFVN---DAEGDYLISVKDVHTIDARARQSCIARYINHSD---------HNANCRFVYFESPGKHMHVIVQTIHDVQKDEELFVDYG 333
            L+V+ ST+P +G GLFA   +P+G  +  Y G+ A + +   DA+  Y+  + + + IDA      + RY N +          +NA     Y+E   +   V ++    +    E+FV YG
Sbjct:    8 LKVKVSTIPQSGKGLFAAIDVPKGAVITEYVGRRATWADVEDDADNPYIYFIDEQNVIDASKDLKSLGRYANDATGLTRVPGLKNNAE----YYEEDNR---VYIKATTAIPAGSEIFVSYG 122
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154599 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A835Z3W3_9STRA1.330e-77100.00SET domain-containing protein (Fragment) n=1 Tax=T... [more]
H3GV72_PHYRM8.150e-1137.07SET domain-containing protein n=1 Tax=Phytophthora... [more]
G4ZS13_PHYSP2.690e-935.34SET domain-containing protein n=1 Tax=Phytophthora... [more]
A0A4Q3SG05_9BACT1.120e-832.48SET domain-containing protein n=1 Tax=Chitinophaga... [more]
A0A2P4Y5G8_9STRA2.950e-834.48SET domain-containing protein n=1 Tax=Phytophthora... [more]
A0A225V8E0_9STRA5.810e-833.90SET domain-containing protein n=1 Tax=Phytophthora... [more]
M4C385_HYAAE6.620e-732.48SET domain-containing protein n=1 Tax=Hyaloperonos... [more]
A0A433DDW9_9FUNG1.450e-634.43SET domain-containing protein n=1 Tax=Jimgerdemann... [more]
UPI001F1176836.510e-627.97SET domain-containing protein n=1 Tax=Niabella gin... [more]
UPI000E0BB9A41.110e-527.87SET domain-containing protein n=1 Tax=Niabella yan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1136610..1136948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154599|gw1.2.333.1
DescriptionSET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
COG categoryS
Max annot lvl4776|Peronosporales
EggNOG OGs2C3YR@1|root,2S6K8@2759|Eukaryota,3QFRG@4776|Peronosporales
Evalue1.34e-11
Seed ortholog164328.Phyra81205
Hectar predicted targeting categoryother localisation
TranscriptId154921
TrackFilteredModels1
ProteinId154599
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154599gene_686Tribonema minus UTEX_B_3156 geneContig_2 1136610..1136948 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_686_1exon_686_1Tribonema minus UTEX_B_3156 exonContig_2 1136610..1136948 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_686CDS_686Tribonema minus UTEX_B_3156 CDSContig_2 1136610..1136948 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154599Trimin1|154599|gw1.2.333.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1136610..1136948 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_686 ID=mRNA_686|Name=jgi.p|Trimin1|154599|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=339bp|location=Sequence derived from alignment at Contig_2:1136610..1136948+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGTTTAAGGGTACGGCAATCGACTGTGCCCATTGCTGGCTACGGTTTATT
TGCAACTGCGAAAATGCCACAAGGGGAAACAGTTGATGTGTACGCTGGCA
AGGTCGCAGCATTTGTGAATGACGCCGAAGGCGATTATCTCATTTCAGTA
AAGGACGTGCACACCATCGATGCGAGGGCACGCCAATCGTGCATCGCTAG
GTACATCAACCACAGCGACCACAATGCCAACTGTCGCTTTGTCTACTTTG
AATCGCCAGGCAAGCACATGCATGTCATAGTGCAAACTATACACGACGTG
CAAAAGGACGAAGAGCTTTTTGTAGACTACGGTCCTTTG
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protein sequence of jgi.p|Trimin1|154599

>Trimin1|154599|gw1.2.333.1 ID=Trimin1|154599|gw1.2.333.1|Name=jgi.p|Trimin1|154599|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=113bp
GLRVRQSTVPIAGYGLFATAKMPQGETVDVYAGKVAAFVNDAEGDYLISV
KDVHTIDARARQSCIARYINHSDHNANCRFVYFESPGKHMHVIVQTIHDV
QKDEELFVDYGPL
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mRNA from alignment at Contig_2:1136610..1136948+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_686 ID=mRNA_686|Name=jgi.p|Trimin1|154599|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=339bp|location=Sequence derived from alignment at Contig_2:1136610..1136948+ (Tribonema minus UTEX_B_3156 )
GGTTTAAGGGTACGGCAATCGACTGTGCCCATTGCTGGCTACGGTTTATT
TGCAACTGCGAAAATGCCACAAGGGGAAACAGTTGATGTGTACGCTGGCA
AGGTCGCAGCATTTGTGAATGACGCCGAAGGCGATTATCTCATTTCAGTA
AAGGACGTGCACACCATCGATGCGAGGGCACGCCAATCGTGCATCGCTAG
GTACATCAACCACAGCGACCACAATGCCAACTGTCGCTTTGTCTACTTTG
AATCGCCAGGCAAGCACATGCATGTCATAGTGCAAACTATACACGACGTG
CAAAAGGACGAAGAGCTTTTTGTAGACTACGGTCCTTTG
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Coding sequence (CDS) from alignment at Contig_2:1136610..1136948+

>mRNA_686 ID=mRNA_686|Name=jgi.p|Trimin1|154599|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=339bp|location=Sequence derived from alignment at Contig_2:1136610..1136948+ (Tribonema minus UTEX_B_3156 )
GGTTTAAGGGTACGGCAATCGACTGTGCCCATTGCTGGCTACGGTTTATT
TGCAACTGCGAAAATGCCACAAGGGGAAACAGTTGATGTGTACGCTGGCA
AGGTCGCAGCATTTGTGAATGACGCCGAAGGCGATTATCTCATTTCAGTA
AAGGACGTGCACACCATCGATGCGAGGGCACGCCAATCGTGCATCGCTAG
GTACATCAACCACAGCGACCACAATGCCAACTGTCGCTTTGTCTACTTTG
AATCGCCAGGCAAGCACATGCATGTCATAGTGCAAACTATACACGACGTG
CAAAAGGACGAAGAGCTTTTTGTAGACTACGGTCCTTTG
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