mRNA_6857 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|80881
Unique NamemRNA_6857
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|80881 vs. uniprot
Match: A0A835YNF2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNF2_9STRA)

HSP 1 Score: 294 bits (753), Expect = 2.080e-100
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1 
Query:   64 MPNKNEEVLSFLPQPLRFAISGGLGNLCFFFIDKAVYMYNPFDWQKATVSWAVSYLISVWLQHSLHTLLVFGRSSEGGYWTSLAVTYATYSVSIALSPVVNAALINYVGLSHSLAWFGTLASTGVLNYFTVSKAMSTADKDQKEL 498
            MPNKNEEVLSFLPQPLRFAISGGLGNLCFFFIDKAVYMYNPFDWQKATVSWAVSYLISVWLQHSLHTLLVFGRSSEGGYWTSLAVTYATYSVSIALSPVVNAALINYVGLSHSLAWFGTLASTGVLNYFTVSKAMSTADKDQKEL
Sbjct:    1 MPNKNEEVLSFLPQPLRFAISGGLGNLCFFFIDKAVYMYNPFDWQKATVSWAVSYLISVWLQHSLHTLLVFGRSSEGGYWTSLAVTYATYSVSIALSPVVNAALINYVGLSHSLAWFGTLASTGVLNYFTVSKAMSTADKDQKEL 145
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BLAST of jgi.p|Trimin1|80881 vs. uniprot
Match: A0A482SUL1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUL1_9ARCH)

HSP 1 Score: 98.6 bits (244), Expect = 7.040e-23
Identity = 52/129 (40.31%), Postives = 74/129 (57.36%), Query Frame = 1 
Query:   97 LPQPLRFAISGGLGNLCFFFIDKAVYMYNPFDWQKATVSWAVSYLISVWLQHSLHTLLVFGRSSEGGYWTSLAVTYATYSVSIALSPVVNAALINYVGLSHSLAWFGTLASTGVLNYFTVSKAMSTADK 483
            LPQ   F ISG L +     +D  + +   F+W+K TV W +SY++S+ ++H+ H  +VFG   EG Y +SL  TY  YS SI +S V N  L+N V L H  AW  T+  TG+ NYF +  +  + DK
Sbjct:   17 LPQYFWFVISGALCDTFQACVDYLISLIYVFEWEKVTVCWTLSYILSICVRHTSHRFIVFGEY-EGTYCSSLMRTYLAYSSSILISMVTNHLLVNMVQLGHKEAWLLTMLWTGLFNYFALKASWRSPDK 144
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BLAST of jgi.p|Trimin1|80881 vs. uniprot
Match: A0A7S3L6V6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L6V6_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.310e-11
Identity = 40/128 (31.25%), Postives = 71/128 (55.47%), Query Frame = 1 
Query:   97 LPQPLRFAISGGLGNLCFFFIDKAVYMYNPFDWQKA----TVSWAVSYLISVWLQHSLHTLLVFGRSSEGG---YWTSLAVTYATYSVSIALSPVVNAALINYVGLSHSLAWFGTLASTGVLNYFTVS 459
            +PQPLR+ +SG LGNLC + +DKA+ ++            ++++ ++Y++ V  QH+ H  LV+G  S      YW++L  T+  Y+ S   S  +N+ L+   G +  + +  T++    LNYF +S
Sbjct:   63 IPQPLRYFVSGNLGNLCLYVLDKALRLWMESMTHPPKNIDSMAYFMAYILHVAAQHAFHAFLVYGLESVSTRQVYWSTLLGTFQAYTGSAIGSTFLNSYLVKQ-GWNRDIVFITTISFFSCLNYFWIS 189
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BLAST of jgi.p|Trimin1|80881 vs. uniprot
Match: A0A7S0GAA7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GAA7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.520e-11
Identity = 48/135 (35.56%), Postives = 75/135 (55.56%), Query Frame = 1 
Query:   97 LPQPLRFAISGGLGNLCFFFIDKAVY-------MYNPF----DWQKATVSWAVSYLISVWLQHSLHTLLVFGRSSEGG---YWTSLAVTYATYSVSIALSPVVNAALINYVGLSHSLAWFGTLASTGVLNYFTVS 459
            LPQ +RFA+SG LG + FFF++K +Y       M N +       K   S+ VSYLI +  QH L+ LLVFG ++      Y+ +LA  YATY  ++  S V N+ L+N   +   +A+  ++    ++NYF ++
Sbjct:   27 LPQLVRFAVSGNLGTVVFFFLEKIIYARVISTEMLNRWPKIIQTNKQMFSFVVSYLIQIIPQHLLNALLVFGWNTIDTVETYFGTLAECYATYGFAMVGSTVTNSFLVNK-RIPKDVAFVISIYGFSIVNYFILN 160
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|80881 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835YNF2_9STRA2.080e-100100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482SUL1_9ARCH7.040e-2340.31Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3L6V6_9STRA1.310e-1131.25Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S0GAA7_9STRA1.520e-1135.56Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_60contigContig_60:731588..732225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|80881|CE80880_84
DescriptionGtrA-like protein
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2E6Y9@1|root,2SDKF@2759|Eukaryota
Evalue9.24e-24
Seed ortholog192875.XP_004349779.1
Hectar predicted targeting categoryother localisation
TranscriptId81203
TrackFilteredModels1
ProteinId80881
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|80881gene_6857Tribonema minus UTEX_B_3156 geneContig_60 731588..732225 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6857_2exon_6857_2Tribonema minus UTEX_B_3156 exonContig_60 731588..731911 -
exon_6857_1exon_6857_1Tribonema minus UTEX_B_3156 exonContig_60 732018..732225 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6857UTR3_6857Tribonema minus UTEX_B_3156 three_prime_UTRContig_60 731588..731618 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6857CDS_6857Tribonema minus UTEX_B_3156 CDSContig_60 732018..732162 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6857UTR5_6857Tribonema minus UTEX_B_3156 five_prime_UTRContig_60 732163..732225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|80881Trimin1|80881|CE80880_84Tribonema minus UTEX_B_3156 polypeptideContig_60 731619..732162 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6857 ID=mRNA_6857|Name=jgi.p|Trimin1|80881|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=532bp|location=Sequence derived from alignment at Contig_60:731588..732225- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCGGCAGAAGCAGCAGCTCCCTACTTGCACAGCAACACTGCGATCCTGA
GCCTGCATTGATCATGCCCAACAAAAACGAGGAGGTGCTGTCATTCCTTC
CTCAGCCGCTGAGATTCGCCATCAGCGGAGGCCTGGGCAACCTGTGTTTC
TTCTTCATAGACAAGGCCGTCTACATGTACAACCCGTTCGACTGGCAAAA
AGCAACAGTCTCGTGGGCTGTGTCGTACCTGATATCGGTGTGGCTGCAGC
ACTCTCTGCATACCCTCCTTGTCTTTGGCCGCAGCTCAGAGGGTGGCTAT
TGGACGAGCCTGGCTGTCACGTACGCAACCTACAGCGTGAGCATCGCGTT
GTCGCCTGTAGTCAACGCTGCTCTGATCAATTACGTTGGGTTGTCCCACT
CCCTGGCGTGGTTTGGTACACTGGCAAGCACGGGAGTCCTCAACTACTTT
ACGGTATCAAAAGCAATGAGCACCGCCGACAAGGACCAAAAAGAATTGTA
GAGGTGGGCATTTCAAAATCACATTGCACTTC
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protein sequence of jgi.p|Trimin1|80881

>Trimin1|80881|CE80880_84 ID=Trimin1|80881|CE80880_84|Name=jgi.p|Trimin1|80881|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=146bp
MPNKNEEVLSFLPQPLRFAISGGLGNLCFFFIDKAVYMYNPFDWQKATVS
WAVSYLISVWLQHSLHTLLVFGRSSEGGYWTSLAVTYATYSVSIALSPVV
NAALINYVGLSHSLAWFGTLASTGVLNYFTVSKAMSTADKDQKEL*
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mRNA from alignment at Contig_60:731588..732225-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6857 ID=mRNA_6857|Name=jgi.p|Trimin1|80881|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=638bp|location=Sequence derived from alignment at Contig_60:731588..732225- (Tribonema minus UTEX_B_3156 )
GGCGGCAGAAGCAGCAGCTCCCTACTTGCACAGCAACACTGCGATCCTGA
GCCTGCATTGATCATGCCCAACAAAAACGAGGAGGTGCTGTCATTCCTTC
CTCAGCCGCTGAGATTCGCCATCAGCGGAGGCCTGGGCAACCTGTGTTTC
TTCTTCATAGACAAGGCCGTCTACATGTACAACCCGTTCGACTGGCAAAA
AGCAACAGGTTAGCAACGTGCTGCTGCGCTTGTCATCCTCGTGTCCGCCT
TTGTGCAACTGAAGCTGTTGCTGACGTACCCACCCCCTCTCCTTTGCTTG
CTGTGCTGGCGCAGTCTCGTGGGCTGTGTCGTACCTGATATCGGTGTGGC
TGCAGCACTCTCTGCATACCCTCCTTGTCTTTGGCCGCAGCTCAGAGGGT
GGCTATTGGACGAGCCTGGCTGTCACGTACGCAACCTACAGCGTGAGCAT
CGCGTTGTCGCCTGTAGTCAACGCTGCTCTGATCAATTACGTTGGGTTGT
CCCACTCCCTGGCGTGGTTTGGTACACTGGCAAGCACGGGAGTCCTCAAC
TACTTTACGGTATCAAAAGCAATGAGCACCGCCGACAAGGACCAAAAAGA
ATTGTAGAGGTGGGCATTTCAAAATCACATTGCACTTC
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Coding sequence (CDS) from alignment at Contig_60:731588..732225-

>mRNA_6857 ID=mRNA_6857|Name=jgi.p|Trimin1|80881|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=438bp|location=Sequence derived from alignment at Contig_60:731588..732225- (Tribonema minus UTEX_B_3156 )
ATGCCCAACAAAAACGAGGAGGTGCTGTCATTCCTTCCTCAGCCGCTGAG
ATTCGCCATCAGCGGAGGCCTGGGCAACCTGTGTTTCTTCTTCATAGACA
AGGCCGTCTACATGTACAACCCGTTCGACTGGCAAAAAGCAACAGTCTCG
TGGGCTGTGTCGTACCTGATATCGGTGTGGCTGCAGCACTCTCTGCATAC
CCTCCTTGTCTTTGGCCGCAGCTCAGAGGGTGGCTATTGGACGAGCCTGG
CTGTCACGTACGCAACCTACAGCGTGAGCATCGCGTTGTCGCCTGTAGTC
AACGCTGCTCTGATCAATTACGTTGGGTTGTCCCACTCCCTGGCGTGGTT
TGGTACACTGGCAAGCACGGGAGTCCTCAACTACTTTACGGTATCAAAAG
CAATGAGCACCGCCGACAAGGACCAAAAAGAATTGTAG
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