mRNA_6833 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154782
Unique NamemRNA_6833
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|154782 vs. uniprot
Match: A0A835YR04_9STRA (EsV-1-7 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR04_9STRA)

HSP 1 Score: 207 bits (528), Expect = 1.560e-63
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    1 QCTAVGCSRRPLYGTVEDEPQFCSLHKAPDMHDVVSRRCGHEDCKRPPTFAMPGDHIPRFCNVHKQGTGMVDXXXXXXXXXXXRRRAVYSEASGDPEFCAQHKAV 315
            QCTAVGCSRRPLYGTVEDEPQFCSLHKAPDMHDVVSRRCGHEDCKRPPTFAMPGDHIPRFCNVHKQGTGMVDXXXXXXXXXXXRRRAVYSEASGDPEFCAQHKAV
Sbjct:    1 QCTAVGCSRRPLYGTVEDEPQFCSLHKAPDMHDVVSRRCGHEDCKRPPTFAMPGDHIPRFCNVHKQGTGMVDXXXXXXXXXXXRRRAVYSEASGDPEFCAQHKAV 105
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154782 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YR04_9STRA1.560e-63100.00EsV-1-7 (Fragment) n=1 Tax=Tribonema minus TaxID=3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_60contigContig_60:624035..627559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154782|gw1.60.217.1
Max annot lvl2880.D7FHY3|-
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Evalue0.000976
Seed ortholog2880.D7FHY3
Hectar predicted targeting categoryother localisation
TranscriptId155104
TrackFilteredModels1
ProteinId154782
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154782gene_6833Tribonema minus UTEX_B_3156 geneContig_60 624035..627559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154782Trimin1|154782|gw1.60.217.1Tribonema minus UTEX_B_3156 polypeptideContig_60 624035..627559 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6833_6exon_6833_6Tribonema minus UTEX_B_3156 exonContig_60 624035..624133 -
exon_6833_5exon_6833_5Tribonema minus UTEX_B_3156 exonContig_60 624434..624560 -
exon_6833_4exon_6833_4Tribonema minus UTEX_B_3156 exonContig_60 625015..625097 -
exon_6833_3exon_6833_3Tribonema minus UTEX_B_3156 exonContig_60 626310..626438 -
exon_6833_2exon_6833_2Tribonema minus UTEX_B_3156 exonContig_60 626925..627152 -
exon_6833_1exon_6833_1Tribonema minus UTEX_B_3156 exonContig_60 627479..627559 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6833CDS_6833Tribonema minus UTEX_B_3156 CDSContig_60 627479..627559 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6833 ID=mRNA_6833|Name=jgi.p|Trimin1|154782|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=747bp|location=Sequence derived from alignment at Contig_60:624035..627559- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGTGCACTGCTGTTGGATGCAGTAGGCGGCCGCTGTACGGCACGGTGGA
AGATGAGCCCCAGTTCTGCAGCCTGCACAAGGCACCCGACATGCACGATG
TCGTGAGCAGGCGCTGCGGGCATGAAGACTGCAAACGGCCGCCCACATTC
GCCATGCCGGGCGATCATATCCCTCGCTTCTGCAACGTCCACAAGCAAGG
CACTGGCATGGTGGACGTGGTCAACAGGAAGTGTGCTGCACCGGGCTGCA
GGCGACGCGCGGTGTACAGCGAGGCCAGTGGTGATCCGGAGTTTTGCGCA
CAACACAAGGCGGTGGGCATGGTGGACACGAGCTTCCGGCGCTGCGAGTT
TGAGGGCTGCAGCAAGTGGCCGCTGTACGCGTATGAGGGGGAGCGCGCGC
GCCTGTGCTCTGCGCACCGCGAGCCGGGCATGAACGACGTCCGCAGCCGC
AGGTGCCTGGCAAACAGCTGCCTGCACCAGCCCAGCTACGGCGTGGAGGG
GTCCCGAGCTCAGTACTGCAGCGCTCACAAGTCGGCCGAGATGGTGGACG
TGGTGAGCCGGCGCTGCAAGGCGCGCGACTGCCGCCGCCGCCCGCTGTAC
GCCTTCGAGGGCGAGAAGGCCAGGTACTGCTCGCTGCACAAGGACGAGCG
CATGGTAGACGTGATGAACTGCCGCTGCAAGGTGCGCGGCTGCAAGGCGC
GCCCCGTGCCCGGCTCCGCCCCCACGGCGCGCTTCTGCGCGCAGCAC
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protein sequence of jgi.p|Trimin1|154782

>Trimin1|154782|gw1.60.217.1 ID=Trimin1|154782|gw1.60.217.1|Name=jgi.p|Trimin1|154782|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=249bp
QCTAVGCSRRPLYGTVEDEPQFCSLHKAPDMHDVVSRRCGHEDCKRPPTF
AMPGDHIPRFCNVHKQGTGMVDVVNRKCAAPGCRRRAVYSEASGDPEFCA
QHKAVGMVDTSFRRCEFEGCSKWPLYAYEGERARLCSAHREPGMNDVRSR
RCLANSCLHQPSYGVEGSRAQYCSAHKSAEMVDVVSRRCKARDCRRRPLY
AFEGEKARYCSLHKDERMVDVMNCRCKVRGCKARPVPGSAPTARFCAQH
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mRNA from alignment at Contig_60:624035..627559-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6833 ID=mRNA_6833|Name=jgi.p|Trimin1|154782|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3525bp|location=Sequence derived from alignment at Contig_60:624035..627559- (Tribonema minus UTEX_B_3156 )
CAGTGCACTGCTGTTGGATGCAGTAGGCGGCCGCTGTACGGCACGGTGGA
AGATGAGCCCCAGTTCTGCAGCCTGCACAAGGTGGGTGACAAGCCCGCTG
ATGTCATGCTGTGTGTGTACAAGAGTAATCGCCGACTGGCACCAATACGA
AGACGCGTACATCAGCGCATCGTCCACGTTGGCGCACAGTTGTGTATCTT
CAGCTTGCCATATATCGCGAGTTGCGCAAGCAGCAGTCATGGCAGACTGC
GAGGTGCAGCTCGTCCTTGGTGCATGCTGAGCCTGCTGGCCGTGTTGCAT
CGCGGACGCTCCCAGGTGATGCCCAGTCGTATGCACTTGCAGGTGCAGCC
ATCAGCCAGTGTCCCTGACGATCGCTGCTGCAAATGGTGTTTGAATCGCC
CCAACAGGCACCCGACATGCACGATGTCGTGAGCAGGCGCTGCGGGCATG
AAGACTGCAAACGGCCGCCCACATTCGCCATGCCGGGCGATCATATCCCT
CGCTTCTGCAACGTCCACAAGCAAGGCACTGGCATGGTGGACGTGGTCAA
CAGGAAGTGTGCTGCACCGGGCTGCAGGCGACGCGCGGTGTACAGCGAGG
CCAGTGGTGATCCGGAGTTTTGCGCACAACACAAGGTACAACTTCATTAA
CTTCAAGTGTGACACCCCCGGGAACGCTGCATATGTGCAAAATCTGTCGG
CAATGCCCGCTTTTATCGCACCTACTTTACCCTGATGCGGCTGGCCAAGT
GACGGCGTTGGTTCAGTGTCTGAGGACTCGAGCGGAAGCCCTGTCACATG
CAGCGGTGGGACGCCCATTTGCCACATCTGCCCCCCGACAGAGGGGCAGT
TCATCGCTTCTACTGACACAGTGATGGATGCAGCCTCTCTTCTGAGCGCT
GAGCACATGCCTCAGCAGCGCATGCGCGCATCGCCGTGACTGCGGCAGAA
CCTGCAGGCGCAGCTGCAAAGGCACCGCGTGCTGATCGCTGCTGCACAGC
GGGACATGAACCTGAGGCACTGCGACGAGGCACGCTGCCGAGCGCTGACA
CAAACTGTTCACATGCCCACTCACTTTTAAAACGTTGCTTCAATGCTGTG
CCGCTGCTCGCTGCGCCGCAGGCGGTGGGCATGGTGGACACGAGCTTCCG
GCGCTGCGAGTTTGAGGGCTGCAGCAAGTGGCCGCTGTACGCGTATGAGG
GGGAGCGCGCGCGCCTGTGCTCTGCGCACCGCGAGCCGGGCATGAACGAC
GTGAGTAGTCGTTGCACGCGCTTAGGTTTGTGGCTGTGTGCGTGTACGCA
AGTGCTGGGTGTATTTGCATTCAGGTGCCGCGTACCCGGCGGTGCATGCG
GGTGTTGTGCACATGAGCAACCAGTGCTGCGCGATCATCGTAACCGCAAA
GTAAGTGATATGTGCTCCGAAGTACATCTAAGTGCCCCTAGCGAAGCGAA
ATACATAAAAGTACTAAGTAACCAGTACATACTTGACACAAGTTGATGGT
TGTCACCAAATAAGCGCATTATATATTTTTGAACAAATGGAAGTATCATG
TGCAAGCTATTCTGATAGCAGGCATCACAGCTGCTTGTTCACAAAAATCT
GCATAATCGCTGCCCGTACCACTGTGATTCATTGCAATGTGTGAGGCTCG
GGGCCAGTGTGTGGTGTCAGACTCATCGTGCTGAATGTGCCAGTAAAAAT
CAGTACCAAAGCCACGGTACGCTCGTGTCATATGCTGATGCCATGCATGC
AGAAAGAGTCTGAGCATCTTCTACAATCACTGGCCGCATGCACTCTGTGT
ATGGCATCATTTCTTCAGCACTGTGCACAATTCAAAAATGAGCGCAAAAG
CCTTGAGCCGAAAGCCTTTTCCGCGCTTTCTAGCATGGTTAAGGTGCACG
CTTGTACCTCAGCACTGCGCATGCATCAATGCGGATATTTTCACGGCCGA
GTAGCCATGGCAAGCGTTGACAGCAATGATTGACAGGCTTTACACATTGA
AGGAAGGCTGTCACGTAGTTTCAGATACGTATATGTATATGGTGGCACTG
TTTGACTCGTGGCCAATGACTGCAGCAGCGGCGACCACGGTTATTGGTGG
AAGGCACTTGCGGCTAACCATCCCTTGTCACTTAGAGCTCAACGATCTTT
TTAATTCGTTTTTCATATATATATATGCCGTAATGCGGCCAGGCCGCAGC
CATAGTCCCAATGCTGAGGGAACGTATGCACTTGAGTCACCTCATGATAT
TCAGGGCCTATCATTGTAAATGATGCCAGCATTGGCGCGGATGCGAACTT
GCGCAGTCGCGTGTTGCATTTGCATACCTGCTGGTATCTGGTCACCATCT
CGTGGCATCATGCGTGCTCTCAGTCACTTATTGACTCATCTCATCATTCG
TGCTCTCACTGCTTAGTTGGCTCGCCGTCGCCGCTGCTGACCTCCCTTGC
TGTTGCCCACAGGTCCGCAGCCGCAGGTGCCTGGCAAACAGCTGCCTGCA
CCAGCCCAGCTACGGCGTGGAGGGGTCCCGAGCTCAGTACTGCAGGTACG
CAGTTGCAGTTGAAGTTGCACGCGCGCCTTTCTCTTTGTCGAGGTGAGGC
AGCAGTCCGTTTGCTTCTCGCGGCGCTCTGCAGGCGAAGCGCTGAACTTG
AAGTTGCAAGTGCATCATCGTGGCGAAGCAACCGCACCCGTCTAGTTGGC
AGCGGTCTGCGGCTGTAGCGCCTTCGAGTTGCAACTTGCGATTGAGGACA
GGGCCCGCACCGTCGCCACCACCACCAGCGTCGTGACAAACATCAGCACG
GCGTGCGCAAGTCTGTGTTCACGGCTCAGCATACGTATGCTCGTACCTGC
AGCTCATTCTCACGCAGTGTTGCGCATCGCTACCCTTGGCTTGATGAACC
AGCGCGCCTTGCGCTGCTTGTCAGACCTCCACAAAGCCGCCAGGCCTCCC
ATTACTGATTGCGTCAGTGCTCTGCTGTTCTTGCTGCTGCGTGCGGCAGC
GCTCACAAGTCGGCCGAGATGGTGGACGTGGTGAGCCGGCGCTGCAAGGC
GCGCGACTGCCGCCGCCGCCCGCTGTACGCCTTCGAGGGCGAGAAGGCCA
GGTACTGCTCGCTGCACAAGGACGAGGTACGCTGTGCGCGGTGCATACGT
CAATCTGTTGTGGTGGATACGTGCATGCACGGTTACAGTCTGCTCTAATG
CTAAAATAGGTACATGGGGCACCAGACGTGGTGTTTTGGGTGATGGACGA
CAACAAAACGCCGCCGCCACCTGTGTGAAACCGGCATTAGCAGCTGTGAC
TCGTCTCGTGACTCGTCGCACACTGCAGCAGCCGCCCACTTCCCACGCAG
GCCTGCCTTTCAAAAACAGGTGAACACCATCTCACGCTCCTGCTCCCCCC
CCCCCCCCTTTCTATCCTTGCCGCAGCGCATGGTAGACGTGATGAACTGC
CGCTGCAAGGTGCGCGGCTGCAAGGCGCGCCCCGTGCCCGGCTCCGCCCC
CACGGCGCGCTTCTGCGCGCAGCAC
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Coding sequence (CDS) from alignment at Contig_60:624035..627559-

>mRNA_6833 ID=mRNA_6833|Name=jgi.p|Trimin1|154782|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=747bp|location=Sequence derived from alignment at Contig_60:624035..627559- (Tribonema minus UTEX_B_3156 )
CAGTGCACTGCTGTTGGATGCAGTAGGCGGCCGCTGTACGGCACGGTGGA
AGATGAGCCCCAGTTCTGCAGCCTGCACAAGGCACCCGACATGCACGATG
TCGTGAGCAGGCGCTGCGGGCATGAAGACTGCAAACGGCCGCCCACATTC
GCCATGCCGGGCGATCATATCCCTCGCTTCTGCAACGTCCACAAGCAAGG
CACTGGCATGGTGGACGTGGTCAACAGGAAGTGTGCTGCACCGGGCTGCA
GGCGACGCGCGGTGTACAGCGAGGCCAGTGGTGATCCGGAGTTTTGCGCA
CAACACAAGGCGGTGGGCATGGTGGACACGAGCTTCCGGCGCTGCGAGTT
TGAGGGCTGCAGCAAGTGGCCGCTGTACGCGTATGAGGGGGAGCGCGCGC
GCCTGTGCTCTGCGCACCGCGAGCCGGGCATGAACGACGTCCGCAGCCGC
AGGTGCCTGGCAAACAGCTGCCTGCACCAGCCCAGCTACGGCGTGGAGGG
GTCCCGAGCTCAGTACTGCAGCGCTCACAAGTCGGCCGAGATGGTGGACG
TGGTGAGCCGGCGCTGCAAGGCGCGCGACTGCCGCCGCCGCCCGCTGTAC
GCCTTCGAGGGCGAGAAGGCCAGGTACTGCTCGCTGCACAAGGACGAGCG
CATGGTAGACGTGATGAACTGCCGCTGCAAGGTGCGCGGCTGCAAGGCGC
GCCCCGTGCCCGGCTCCGCCCCCACGGCGCGCTTCTGCGCGCAGCAC
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