mRNA_6825 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350307
Unique NamemRNA_6825
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|350307 vs. uniprot
Match: A0A835YNP0_9STRA (Peroxisomal biogenesis factor 11-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNP0_9STRA)

HSP 1 Score: 599 bits (1544), Expect = 7.460e-215
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 1 
Query:    1 MSTPSGAEDASDETSTSPELELPAIPVADGFANKAPISLAAYVQATQKLEGRDKLTKIVQYGSRFLFWYFKNVAPNGELADKAYSLYRVTQLSRKAFRMAKVADEVVRITALMESKQYPNFKSTVAILKCASMGAFWTYDNLNYLTQAKVIGYGTDRAMRGFSRSWAIANVAMIYLGLQTLTETSKRRQALAQEYKKAAAVEQGNAADREVQRIRGEAKAANVAHFSSCLMLCKAVLDLTVAINMPGMDLLLKVFGKKLNDGVMGASGVLSALIVIFNCWPDKPKAAVALPQVAATAPAAVAGSAGSTTPRSTRTT 948
            MSTPSGAEDASDETSTSPELELPAIPVADGFANKAPISLAAYVQATQKLEGRDKLTKIVQYGSRFLFWYFKNVAPNGELADKAYSLYRVTQLSRKAFRMAKVADEVVRITALMESKQYPNFKSTVAILKCASMGAFWTYDNLNYLTQAKVIGYGTDRAMRGFSRSWAIANVAMIYLGLQTLTETSKRRQALAQEYKKAAAVEQGNAADREVQRIRGEAKAANVAHFSSCLMLCKAVLDLTVAINMPGMDLLLKVFGKKLNDGVMGASGVLSALIVIFNCWPDKPKAAVALPQVAATAPAAVAGSAGSTTPRSTRTT
Sbjct:    1 MSTPSGAEDASDETSTSPELELPAIPVADGFANKAPISLAAYVQATQKLEGRDKLTKIVQYGSRFLFWYFKNVAPNGELADKAYSLYRVTQLSRKAFRMAKVADEVVRITALMESKQYPNFKSTVAILKCASMGAFWTYDNLNYLTQAKVIGYGTDRAMRGFSRSWAIANVAMIYLGLQTLTETSKRRQALAQEYKKAAAVEQGNAADREVQRIRGEAKAANVAHFSSCLMLCKAVLDLTVAINMPGMDLLLKVFGKKLNDGVMGASGVLSALIVIFNCWPDKPKAAVALPQVAATAPAAVAGSAGSTTPRSTRTT 316
[Close]
BLAST of jgi.p|Trimin1|350307 vs. uniprot
Match: A0A836CN76_9STRA (Peroxisomal biogenesis factor 11-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN76_9STRA)

HSP 1 Score: 283 bits (725), Expect = 3.600e-90
Identity = 159/301 (52.82%), Postives = 205/301 (68.11%), Query Frame = 1 
Query:   10 PSGAEDASDETSTSPELELPAI---PVADGFANKAPISLAAYVQATQKLEGRDKLTKIVQYGSRFLFWYFKNVAPNGELADKAYSLYRVTQLSRKAFRMAKVADEVVRITALMESKQYPNFKSTVA---------ILKCASMGAFWTYDNLNYLTQAKVIGYGTDRAMRGFSRSWAIANVAMIYLGLQTLTETSKRRQALAQEYKKAAAVEQGNAADREVQRIRGEAKAANVAHFSSCLMLCKAVLDLTVAINMPGMDLLLKVFGKKLNDGVMGASGVLSALIVIFNCWPDKPKAAVALPQ 876
            P+ AE  SD  S+  E   PA+   PV DG A KAPISL AYVQ T KL+GRDK+TKI+QYG+RFL WYF +VAPN  L ++A+ LYR TQ+SRKAFRM KVADE V+I A+ ++KQ    + T+            + A+MG FWT DNL+YLT  K + YG  RA++ FSR W +A++ MI L  Q L ET +RR ALA+E  +  A  Q       V++   + +AAN  HF +CL L KAV+DLT A+N+ G+DL  KVFGKKLNDGV+GASG++SAL V++NCWPD+PK A +LPQ
Sbjct:   15 PAAAETGSD-VSSKEEHRSPAVHAVPVKDGLATKAPISLEAYVQTTSKLDGRDKVTKIMQYGARFLSWYFTSVAPNKALQERAHLLYRTTQVSRKAFRMLKVADEAVKIMAIAQNKQQ---RGTLKGKPEHCHGQPTRSAAMGLFWTMDNLHYLTTTKTVAYGHQRALKVFSRCWTVASLCMIVLSTQALRETGQRRSALAEELARLTADAQSP--HTAVEKAAADLRAANAQHFKNCLALLKAVMDLTCAVNISGVDLPKKVFGKKLNDGVIGASGIVSALTVLYNCWPDQPKGA-SLPQ 308
[Close]
BLAST of jgi.p|Trimin1|350307 vs. uniprot
Match: D8LER2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER2_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 3.970e-50
Identity = 105/280 (37.50%), Postives = 155/280 (55.36%), Query Frame = 1 
Query:   73 IPVADGFANKAPISLAAYVQATQKLEGRDKLTKIVQYGSRFLFWYFKNVAPNGELADKAYSLYRVTQLSRKAFRMAKVADEVVRITALMESK---------QYPNFKSTVAILKCASMGAFWTYDNLNYLTQAKVIGYGTDRAMRGFSRSWAIANVAMIYLGLQTLTETSKRRQALAQEYKKAAAVEQ------------GNAADRE---------------------VQRIRGEAKAANVAHFSSCLMLCKAVLDLTVAINMPGMDLLLKVFGKKLNDG 786
            IP+ D  A K  +SL ++V   +KL+GRDK TK++QYG+RFL W+    A + +L+ + + LYR TQ SRKAFRM K+ DEVV++  ++ +           +  +  T+  ++C +MGAFWT+DNLNYLT  + + +G  +A RGFSRSW++++   I LG+ +L +T K+R+     Y  AAAV +            GN                          V  +R   + AN  HF S LM+ K  LDLT A+N+ GMD   ++ G+KLNDG
Sbjct:   10 IPIDDALAVKEAVSLESFVATLRKLDGRDKFTKLMQYGARFLAWWLS--ARDPDLSQRVFKLYRTTQRSRKAFRMLKILDEVVKLRQILRTAGGNSASSRTAFLGYAETLMSVRCLAMGAFWTFDNLNYLTITETVNFGVAKATRGFSRSWSVSSALAIMLGIDSLRKTEKKRREALSAY--AAAVSERIAPPDRCGHCNGNGXXXXXXXXXXXXXXXXXXXXXXXXXVAGLREALRRANADHFKSWLMVLKGALDLTCAVNVTGMDFPKRLLGRKLNDG 285
[Close]
BLAST of jgi.p|Trimin1|350307 vs. uniprot
Match: A0A3F2RFA1_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RFA1_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.910e-35
Identity = 83/259 (32.05%), Postives = 139/259 (53.67%), Query Frame = 1 
Query:   91 FANKAPISLAAYVQATQKLEGRDKLTKIVQYGSRFLFWYFKNVAPNGELADKAYSLYRVTQLSRKAFRMAKVADEVVRITALMESKQYPNFKSTVAILKCASMGAFWTYDNLNYLTQAKVIGYGTDRAMRGFSRSWAIANVAMIYLGLQTLTETSKR----RQALAQEYKKAAAVEQGNAADREVQRIRGEAKAANVAHFSSCLMLCKAVLDLTVAINMPGMDLLLKVFGKKLNDGVMGASGVLSALIVIFNCWPDKPK 855
               KAPISL A+++    LEGRDKL+K++QYGSR L +Y  +  P  +L  + ++L++V Q SRKAFR+ K    V ++  L  +K  P ++  +  ++   M  ++  DN+ +  +AKV+ +  +   R     W  AN+A  +  +  L    ++    R  LA E          + A R V+ ++G+ +A     F   L + K + DL V+ N  G+ L  ++ G KL+DG++G+ G +SA +V++N WP  PK
Sbjct:    1 MTEKAPISLDAFIKLAFCLEGRDKLSKMLQYGSRALAFYVLSADPKSDLGQRLHALFKVMQQSRKAFRLGKSVTYVKKLQTLSSNKAVPEWQKYLQFIQNVGMLGYFFTDNVAFACKAKVLRFDAEELSRRGGVMWFCANMAGFFSAVDNLNADVEKEKCVRDILASE----------DDATR-VEALQGQLEALRSGRFKKLLAVLKVMCDLIVSSNTSGVRLAERITGTKLHDGIVGSVGCVSAAVVLYNTWPSAPK 248
[Close]
BLAST of jgi.p|Trimin1|350307 vs. uniprot
Match: K3W8G5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W8G5_GLOUD)

HSP 1 Score: 139 bits (350), Expect = 2.420e-35
Identity = 80/251 (31.87%), Postives = 135/251 (53.78%), Query Frame = 1 
Query:  100 KAPISLAAYVQATQKLEGRDKLTKIVQYGSRFLFWYFKNVAPNGELADKAYSLYRVTQLSRKAFRMAKVADEVVRITALMESKQYPNFKSTVAILKCASMGAFWTYDNLNYLTQAKVIGYGTDRAMRGFSRSWAIANVAMIYLGLQTLTETSKRRQALAQEYKKAAAVEQGNAADREVQRIRGEAKAANVAHFSSCLMLCKAVLDLTVAINMPGMDLLLKVFGKKLNDGVMGASGVLSALIVIFNCWPDKP 852
            KAP+SL   ++    +EGRDKLTK++QYGSR L +Y  +   N ++  K  +LY+ TQ SRKAFR+ K      ++  L+ +K    ++  +  ++   M  F+ YDN+ + ++AKVI +  + A +     W  AN+A   L +  L    ++ + +    +   A E+  A    +  ++ +  A   + F   L + K   DL V+ N  G+ L  ++ G KL+DG++G+ G +SAL VI+N WP+ P
Sbjct:    4 KAPLSLDTVIKVAFSMEGRDKLTKLMQYGSRALAFYVLSADKNSDVGKKLTNLYKTTQTSRKAFRLGKSVTYYKKLQVLVANKSLTPWQRYLQYIQNTGMFGFFIYDNMAFASKAKVINFNAEEAAKRGGVLWFCANIAGFALAITNLNGDIEKEKCI----RDILASEEDEA---RIASLQAQLDALEQSRFKKFLAVLKVTCDLIVSSNTSGIRLAERITGTKLHDGIVGSVGCVSALTVIYNAWPNVP 247
[Close]
BLAST of jgi.p|Trimin1|350307 vs. uniprot
Match: W2MZD0_PHYPR (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=W2MZD0_PHYPR)

HSP 1 Score: 137 bits (346), Expect = 1.400e-34
Identity = 80/255 (31.37%), Postives = 139/255 (54.51%), Query Frame = 1 
Query:  100 KAPISLAAYVQATQKLEGRDKLTKIVQYGSRFLFWYFKNVAPNGELADKAYSLYRVTQLSRKAFRMAKVADEVVRITALMESKQYPNFKSTVAILKCASMGAFWTYDNLNYLTQAKVIGYGTDRAMRGFSRSWAIANVAMIYLGLQTLTETSKRRQALAQEYKKAAAVEQGNAADREVQRIRGEAKAANVAHFSSCLMLCKAVLDLTVAINMPGMDLLLKVFGKKLNDGVMGASGVLSALIVIFNCWPDKPKAAV 864
            KAP+SL A+++    LEGRDKL+K++QYGSR L +Y  +  P  ++  + ++LY+V Q SRKAFR+ K      ++  L  SK     +  +  ++   M  ++  DN+ + ++AKV+ +  D   R     W  ANVA  +  L++L    ++ + +    +   A E+  A    V+ ++ + +      F   L + K + DL V+ N  G+ L  ++ G KL+DG++G+ G +SA +V++N WP  PK A+
Sbjct:    4 KAPLSLDAFIKLAFCLEGRDKLSKMLQYGSRALAFYVLSADPKSDVGQRLHALYKVMQQSRKAFRLGKSVTYYKKLQTLSSSKSLTETQRYLQFIQNLGMLGYFLADNVAFASKAKVLRFDADDLARRGGVMWFCANVAGFFNALESLNADVEKEKCV----RDILASEEDTA---RVETLQNQLETLRSGRFKKLLSVLKVMCDLIVSSNTSGVRLAERITGTKLHDGIIGSVGCVSAAVVLYNTWPSAPKKAL 251
[Close]
BLAST of jgi.p|Trimin1|350307 vs. uniprot
Match: A0A5D6Y5Z2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5Z2_9STRA)

HSP 1 Score: 144 bits (363), Expect = 2.050e-34
Identity = 92/276 (33.33%), Postives = 144/276 (52.17%), Query Frame = 1 
Query:   76 PVADGFANKAPISLAAYVQATQKLEGRDKLTKIVQYGSRFLFWYFKNVAPNGELADKAYSLYRVTQLSRKAFRMAKVADEVVRITALMESKQYPNFKSTVAILKCASMGAFWTYDNLNYLTQAKVIGYGTDRAMRGFSRSWAIANVAMIYLGLQTLTETSKR----RQALAQEYKKAAAVEQGNAADREVQRIRGEAKAANVAHFSSCLMLCKAVLDLTVAINMPGMDLLLKVFGKKLNDGVMGASGVLSALIVIFNCWPD---KPKAAVALPQVA 882
            P A     KAP+S  A V+    +EGRDKLTK++QYGSR L +Y  +  P  +   K  +LY+ TQ SRKAFR+ K A    ++ AL ++K    ++  + +++ + M  F+ YDN+ +  +AK+  +  D A +     W  AN+A   L + +L    ++    R  LA E          + A R +Q ++ +  A   +     L + K   DL V+ N  G+ L  ++ G KL+DG++G+ G +SAL VI+N WP    KP A  A P+ A
Sbjct:  398 PAAHTMETKAPLSFDAAVKVAFSMEGRDKLTKLMQYGSRALAFYVLSADPKSDFGQKLSNLYKTTQTSRKAFRLGKSATYYKKLLALADNKALSPWQRYLQLIQNSGMFGFFIYDNMAFAGKAKIANFNADEAAKRGGVLWFCANIAGFMLAISSLQADIEKEKVVRDVLASE----------DDATR-IQALQAQLDALEQSRLKKFLAVLKVTCDLIVSSNTSGIRLAERITGSKLHDGIIGSVGCVSALTVIYNAWPTVTAKPAAIEAAPKKA 662
[Close]
BLAST of jgi.p|Trimin1|350307 vs. uniprot
Match: G5A581_PHYSP (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=G5A581_PHYSP)

HSP 1 Score: 135 bits (339), Expect = 1.610e-33
Identity = 79/255 (30.98%), Postives = 140/255 (54.90%), Query Frame = 1 
Query:  100 KAPISLAAYVQATQKLEGRDKLTKIVQYGSRFLFWYFKNVAPNGELADKAYSLYRVTQLSRKAFRMAKVADEVVRITALMESKQYPNFKSTVAILKCASMGAFWTYDNLNYLTQAKVIGYGTDRAMRGFSRSWAIANVAMIYLGLQTLTETSKRRQALAQEYKKAAAVEQGNAADREVQRIRGEAKAANVAHFSSCLMLCKAVLDLTVAINMPGMDLLLKVFGKKLNDGVMGASGVLSALIVIFNCWPDKPKAAV 864
            KAP+SL A+++    LEGRDKL+K++QYGSR L +Y  +  P  ++  + ++LY+V Q SRKAFR+ K      ++ AL  +K     +S +  ++   M  ++  DN+ + ++AKV+ +  +   +     W  ANVA  +  +++L    ++ + +    +   A E+  A    V  ++ + +A     F   L + K   DL V+ N  G+ L  ++ G KL+DG++G+ G +SA +V++N WP  PK A+
Sbjct:    4 KAPVSLDAFIKLAFCLEGRDKLSKMLQYGSRALAFYILSADPKSDVGQRLHALYKVMQQSRKAFRLGKSVTYYKKLQALSGNKSLSEGQSYLQFVQNVGMLGYFISDNVAFASKAKVLRFDAEELSKKGGILWFCANVAGFFNAVESLNADVEKEKCV----RDILASEEDAA---RVDALQTQLEALRSGRFKKLLAVLKVTCDLVVSSNTGGVRLAERITGTKLHDGIIGSVGCVSAAVVLYNTWPSAPKKAL 251
[Close]
BLAST of jgi.p|Trimin1|350307 vs. uniprot
Match: A0A6H5KFY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY8_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.910e-33
Identity = 69/169 (40.83%), Postives = 102/169 (60.36%), Query Frame = 1 
Query:  355 PNFKSTVAILKCASMGAFWTYDNLNYLTQAKVIGYGTDRAMRGFSRSWAIANVAMIYLGLQTLTETSKRRQALA----QEYKKAAAVEQGNAADREVQRIRGEAKAANVAHFSSCLMLCKAVLDLTVAINMPGMDLLLKVFGKKLNDGVMGASGVLSALIVIFNCWPDK 849
            P +  T+  ++C +MGAFWT+DNLNYLT  + + +G  RA RGFSRSW++++   I LG+ +L +   R  +      Q         +G+ A      +R   + AN  HF S LM+ K  LDLT A+N+ GMDL  ++ G+KLNDG++GA+G  SAL V++N WP +
Sbjct:   14 PGYAETLMFVRCLAMGAFWTFDNLNYLTITETVNFGVARATRGFSRSWSVSSALAIMLGIDSLRKVPLRGGSCGVVERQRXXXXXXXXKGDVAG-----LREALRQANADHFKSWLMVLKGALDLTCAVNVTGMDLPKRLLGRKLNDGIVGAAGCASALCVLYNNWPSR 177
[Close]
BLAST of jgi.p|Trimin1|350307 vs. uniprot
Match: A0A2D4BV97_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BV97_PYTIN)

HSP 1 Score: 134 bits (336), Expect = 3.600e-33
Identity = 77/257 (29.96%), Postives = 135/257 (52.53%), Query Frame = 1 
Query:   97 NKAPISLAAYVQATQKLEGRDKLTKIVQYGSRFLFWYFKNVAPNGELADKAYSLYRVTQLSRKAFRMAKVADEVVRITALMESKQYPNFKSTVAILKCASMGAFWTYDNLNYLTQAKVIGYGTDRAMRGFSRSWAIANVAMIYLGLQTLTETSKRRQALAQEYKKAAAVEQGNAADREVQRIRGEAKAANVAHFSSCLMLCKAVLDLTVAINMPGMDLLLKVFGKKLNDGVMGASGVLSALIVIFNCWPDKPKAAVA 867
            +KAP++L   ++    LEGRDK+ K +QYGSR + +Y  ++ P  ++  +   L++VTQ SRKAFR+ K      +   +M+ K    ++  + +++   M  F+ YDN+ +L +AK + +  + A +     W  ANVA   + +  L    ++ + +    K     E+  A    ++ +R + +      F   L + K   DL V+ N  G+ L  +V+G KL+DG++G  G +SAL V++N WP  P  A+A
Sbjct:    3 HKAPLTLDTAIKVAFCLEGRDKINKFIQYGSRAMAFYLLSMDPKSDMGKRFSELFKVTQQSRKAFRLGKSVTFYKKAMQIMDDKTLSPWQKYLQLIQSWGMVGFFVYDNMAFLAKAKFMPWDANEAAKRGGILWFCANVAGFMIAMNNLNADLEKEKCIQDVLK----TEEDPA---RIESLRAQVQTLRQNRFKKFLAMLKVTCDLIVSSNTSGVRLPERVWGTKLHDGIIGPIGCVSALTVLYNTWPTAPTPAIA 252
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350307 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YNP0_9STRA7.460e-215100.00Peroxisomal biogenesis factor 11-domain-containing... [more]
A0A836CN76_9STRA3.600e-9052.82Peroxisomal biogenesis factor 11-domain-containing... [more]
D8LER2_ECTSI3.970e-5037.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A3F2RFA1_9STRA1.910e-3532.05Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
K3W8G5_GLOUD2.420e-3531.87Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
W2MZD0_PHYPR1.400e-3431.37Uncharacterized protein n=13 Tax=Phytophthora TaxI... [more]
A0A5D6Y5Z2_9STRA2.050e-3433.33Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
G5A581_PHYSP1.610e-3330.98Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A6H5KFY8_9PHAE1.910e-3340.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2D4BV97_PYTIN3.600e-3329.96Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_60contigContig_60:588748..594375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350307|estExt_Genemark1.C_Ctg_600081
DescriptionPeroxisomal biogenesis factor 11 domain-containing protein. Source PGD
COG categoryS
Max annot lvl121069|Pythiales
EggNOG OGs2CV0J@1|root,2RQ4E@2759|Eukaryota,1MFRI@121069|Pythiales
Evalue2.08e-37
Seed ortholog36331.EPrPI00000018570
Hectar predicted targeting categoryother localisation
TranscriptId350629
TrackFilteredModels1
ProteinId350307
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350307gene_6825Tribonema minus UTEX_B_3156 geneContig_60 588748..594375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350307Trimin1|350307|estExt_Genemark1.C_Ctg_600081Tribonema minus UTEX_B_3156 polypeptideContig_60 588922..594375 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6825_11exon_6825_11Tribonema minus UTEX_B_3156 exonContig_60 588748..589017 -
exon_6825_10exon_6825_10Tribonema minus UTEX_B_3156 exonContig_60 589409..589463 -
exon_6825_9exon_6825_9Tribonema minus UTEX_B_3156 exonContig_60 589912..589952 -
exon_6825_8exon_6825_8Tribonema minus UTEX_B_3156 exonContig_60 590231..590287 -
exon_6825_7exon_6825_7Tribonema minus UTEX_B_3156 exonContig_60 591115..591189 -
exon_6825_6exon_6825_6Tribonema minus UTEX_B_3156 exonContig_60 591561..591633 -
exon_6825_5exon_6825_5Tribonema minus UTEX_B_3156 exonContig_60 592198..592270 -
exon_6825_4exon_6825_4Tribonema minus UTEX_B_3156 exonContig_60 592796..592890 -
exon_6825_3exon_6825_3Tribonema minus UTEX_B_3156 exonContig_60 593602..593694 -
exon_6825_2exon_6825_2Tribonema minus UTEX_B_3156 exonContig_60 593990..594111 -
exon_6825_1exon_6825_1Tribonema minus UTEX_B_3156 exonContig_60 594205..594375 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6825UTR3_6825Tribonema minus UTEX_B_3156 three_prime_UTRContig_60 588748..588921 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6825CDS_6825Tribonema minus UTEX_B_3156 CDSContig_60 594205..594375 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6825 ID=mRNA_6825|Name=jgi.p|Trimin1|350307|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1125bp|location=Sequence derived from alignment at Contig_60:588748..594375- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACGCCAAGTGGTGCAGAGGATGCGTCCGATGAAACTAGCACATC
GCCCGAGCTGGAGCTGCCTGCGATCCCCGTGGCTGATGGCTTCGCCAACA
AAGCTCCCATCAGTCTTGCTGCTTACGTGCAGGCCACACAGAAGCTGGAG
GGACGGGACAAGCTGACTAAGATCGTGCAGTATGGCTCCAGGTTTCTTTT
TTGGTACTTCAAGAACGTGGCGCCCAATGGAGAGCTGGCGGATAAGGCGT
ACTCGCTGTACAGGGTTACCCAGCTCAGCCGCAAGGCCTTCAGGATGGCG
AAAGTGGCGGATGAGGTGGTCCGTATAACAGCGCTCATGGAGAGCAAGCA
GTACCCCAACTTCAAGAGCACGGTCGCCATCCTCAAGTGCGCATCCATGG
GCGCGTTCTGGACGTACGACAACCTTAACTACCTGACGCAGGCAAAGGTC
ATCGGTTACGGCACCGACAGGGCCATGCGAGGTTTCAGCCGCTCGTGGGC
GATCGCCAACGTGGCCATGATCTACCTTGGCTTGCAGACGCTCACGGAGA
CCAGCAAGCGCAGGCAGGCACTGGCGCAGGAGTACAAGAAAGCTGCAGCT
GTTGAGCAAGGCAACGCTGCAGACAGGGAGGTGCAGCGCATCCGCGGCGA
GGCCAAGGCCGCAAACGTGGCACACTTTAGCAGCTGTCTGATGCTCTGCA
AGGCGGTGCTGGACCTCACTGTGGCCATCAATATGCCCGGCATGGATCTT
CTCCTCAAGGTGTTCGGCAAGAAGTTGAATGATGGCGTCATGGGCGCCAG
CGGTGTGCTGTCCGCGCTGATCGTAATCTTCAACTGCTGGCCCGACAAGC
CCAAGGCGGCAGTGGCGCTTCCACAAGTGGCAGCGACCGCGCCTGCTGCA
GTCGCAGGCAGCGCTGGCAGCACCACTCCCCGAAGCACAAGAACAACCTG
ACTCTTACGACAGCAGCATTTTGGCTCACGATGTAGTCTTCTTGTTTCAA
CTGCTGGCGCGCCTTGCCTATCAGGCGCGCTGTTACAAAACACTAATAGA
CTAGACCGCAACAATGCCGCCGCCTGTTTGTGTTTACATGCATGGCGCTG
TGCGTGCGTGTGTGCTTTGATTTTG
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protein sequence of jgi.p|Trimin1|350307

>Trimin1|350307|estExt_Genemark1.C_Ctg_600081 ID=Trimin1|350307|estExt_Genemark1.C_Ctg_600081|Name=jgi.p|Trimin1|350307|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=317bp
MSTPSGAEDASDETSTSPELELPAIPVADGFANKAPISLAAYVQATQKLE
GRDKLTKIVQYGSRFLFWYFKNVAPNGELADKAYSLYRVTQLSRKAFRMA
KVADEVVRITALMESKQYPNFKSTVAILKCASMGAFWTYDNLNYLTQAKV
IGYGTDRAMRGFSRSWAIANVAMIYLGLQTLTETSKRRQALAQEYKKAAA
VEQGNAADREVQRIRGEAKAANVAHFSSCLMLCKAVLDLTVAINMPGMDL
LLKVFGKKLNDGVMGASGVLSALIVIFNCWPDKPKAAVALPQVAATAPAA
VAGSAGSTTPRSTRTT*
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mRNA from alignment at Contig_60:588748..594375-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6825 ID=mRNA_6825|Name=jgi.p|Trimin1|350307|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5628bp|location=Sequence derived from alignment at Contig_60:588748..594375- (Tribonema minus UTEX_B_3156 )
ATGAGCACGCCAAGTGGTGCAGAGGATGCGTCCGATGAAACTAGCACATC
GCCCGAGCTGGAGCTGCCTGCGATCCCCGTGGCTGATGGCTTCGCCAACA
AAGCTCCCATCAGTCTTGCTGCTTACGTGCAGGCCACACAGAAGCTGGAG
GGACGGGACAAGCTGACTAAGGTACGCAATGCCCACTTCAACTATCAACA
ACCCTGCCACCACGGCGAGTGCTGACGGGACGTGATCGCGTTGTTGTACC
GTGCTGGCCAACAGATCGTGCAGTATGGCTCCAGGTTTCTTTTTTGGTAC
TTCAAGAACGTGGCGCCCAATGGAGAGCTGGCGGATAAGGCGTACTCGCT
GTACAGGGTTACCCAGCTCAGCCGCAAGGCCTTCAGGTGTGGTGGCGATG
CCCTGCGCTTCATCGAAGCAATGCGTGATACATTGTTTTGCTCACCCCAA
TTTATGCGTCATACACGACAGCACATGCGTGATTGTCCAAGCATCGCTTC
CTGCGTCTGCAACTCAACTCTGTGCAAGAGCGTCAAGTTTTACACCAGGG
AGTCCAACTTCGCCTGAAGGAGCTATGTTACATGGCCTATGTGACACATG
ATGCCTTACACGCTGGCAGCTGCCCGGTGCGCATACGTCTGCGACCAGTC
TCACTTGTCATCACATCTAATTTGTGTGCAGGATGGCGAAAGTGGCGGAT
GAGGTGGTCCGTATAACAGCGCTCATGGAGAGCAAGCAGTACCCCAACTT
CAAGAGCACGGTCGCCATCCTCAAGTGAGCACAAAAGGCATCGCTCCTGC
GTCATTTGTGCGCTGTAGTGGGCTGCTCGACTACGCCCGCGTAGATTTGC
CGTTGCGCAGTGCGGCAGGAGCTGAACTGCCTGTTCCATCAAGTCGAAAA
GAGTGGTTGCATGCAATAGCTGAGATGCAAGAGTACTTGCTGCACCCAGA
AACGTGTGTGCTCTCGCTGTTTCGCGCATTGAGGATACTGATCATGCCCC
AAGCTGACGCACTGGTATTCTGACTCAGCCATTGAGGCTTGCGCTGGCGC
GCATGCATATTGATGGTGGTGGCGCCACGTTTTGAGGGCAGATGACTCAT
CTGCAGGGGCGCGCTGGCATCTGATGTCAGGCACAGGATACGACAGTGCT
CCGCGGTGCGCACACCCACAACATGTTGTTTATTGAAGTTCGTACATTTT
CAATACAGAAGTATACTGCATCAAGTAGTTTAAAAATGGATGTGGGTTGC
GTGCCTGAGGGTGACATGGACATCTTGTACTCCACAACACCTGCGCGTCA
AGTAGCCAGTATGTGTGCTTGTCTCCGCAACGTTCAGCACTGCTACGAAG
TGCACCCTATTCAGTCTGCGATTAGTTCTCCGAGGCCTGCTGCACAGAGC
TCGCGCGCATGACCCTGCGTCGTTGCTGTGTTTTCATCGAGCGCCAAGAG
CATCACCCCTTTGGCCGTACGTGTTGCCGCCGCAGGTGCGCATCCATGGG
CGCGTTCTGGACGTACGACAACCTTAACTACCTGACGCAGGCAAAGGTCA
TCGGTTACGGCACCGACAGGGCCATGCGAGGTGAGCAGTGCTCAGTCTGC
GGGCGCGCAGCCGCGCGCACGCTCGCACTGCTTTCGCGACGACGCACACT
GAGGTGTTTTACAACATGGACGACGCGCCGCTCGCACTGCTCGCAGCGTC
ACAGGCCAGGTTTTTTCCTCACAACGTGCATGGATGTTCGCTGATGTATG
TGTGCGAAGGGCACTCATGCCGCCATCCGCACGGAGAAGGCTCTTGCAGT
CCATTTCGTTACTGCAAGCACGTGGAACATGCACCCCGCTGGGCTGCTTG
CAGGACCGCCCAGCCGCTCATTTGTGCATGGTGCACAGCATGGAGCAATG
TCCCACTAGTCTGACCGCATATGCCATGTCGATGCTGCAGAAGTGAGTGA
GGCTTGCCTGCTTCTGCCGTCGGCCACCGTCACTGGCGTGCTGCGGGTGC
TGCGGCGTTCCGGGCTTGGCGCCTGCTCACGACCGAACGCCAAATGGCAG
CCGTTGACTTTTGTCGATATGCAATGACTTTCTTTCTGTTTTTGCATCGA
CACAGGTTTCAGCCGCTCGTGGGCGATCGCCAACGTGGCCATGATCTACC
TTGGCTTGCAGACGCTCACGGAGACCAGGTATGCAGCATTGATACATGCC
GTATGACGTAGATGAGGCACTTGAGCTTGTTGGATTCGCATTGTGCAGCG
CAGTGGCATATGCGGTGTCTGGCATACCCGCTTGCTGCCCGGCTCAGACA
TTGGTACCAATAATGTACTGTAATCCGGTCTTGGCAATAGCCGCAACCGG
TGCAATGTGCAATGTGGGTCTATCGTTTGTTTGGTATCGCGCAGCTGCAG
CTTTTCTAGGCTCTTATGTCCGCAGCGTGGCAATGGCTGTGCAACTTCAA
CTCTCCCCGAGCCGGCAATGTGCGTCGGCCGCAAGCCCTTTATCTGCGTG
ATTGTGTCTCTACACGAAGTGCACTGGTGGCCAAAGGCAGACTCTGGTTT
CTAACCCTGTATTCACAGACACACGTGCTAGCAGGCCCACCTGCGAGCGA
CTCCTATTGCTGCGCACTGCCTTGCCTCTTAATAAGCAACGTCATTCATC
TACTTTCGAGCCATCGCGCAGGCCAGCCCTCCGTGCCTCACACCCTTGGT
ATGCCATTCGCCCTCTATTTGTCGCACCACGTCCTGCTGCAGCAAGCGCA
GGCAGGCACTGGCGCAGGAGTACAAGAAAGCTGCAGCTGTTGAGCAAGGC
AACGCTGCAGACAGGGTGAGCCCCGCGGTCTGTCGAGAGCTCCACTGGCG
CGCGTTCAGCACATGAGTGCTTGCGATCTGATGCCTCTTGTCACTGGTCG
CATGTAATGCCGTAATGAATGCTTGCGATACGACGTCTTTCGTCCATATT
TTCATTGCACACGTGGTGCCGAAGCACCCAGAAAGCGCCCCGGGGAACTG
CATTGGTCTTCAGGTGGCTCGTGTTGTGATACTGGCACTGCCTCAGGTGC
CATGGCCTTCTGCTGGTGTGTGTCCTGCCCAAGCAAGTAAGTAGTCAGGG
TGCAATGAACATAAGCACCGCGACAGTTACACTCCATGCTAGTGCCAGAT
TGTAATCGGCACCTGGACATCCCCGCTCCATCGCAGGAGGTGCAGCGCAT
CCGCGGCGAGGCCAAGGCCGCAAACGTGGCACACTTTAGCAGCTGTCTGA
TGCTCTGCAAGGTAAGGCCATCTCTTGTCCCTCCCAAGGGAGCAACTGCC
CTTCAAGTTGTCACGTCATCAGAGCTTTCAATTTGGGGCATGGCTTCATG
GCACCCTCTCAGTGCGGTTGCACCAGGCGGGTTGTCATAGTGCCGCCCCA
TGCTGAAAGCAGGGGTAGGGCTGGTTCATATTTGGGCACAACGAGGCAGT
CAGCAGCAGTGTGCCGAGCAACTGTCCTGGCGGACAGGCTGTTAGCTGCT
CCGCACTGAACCGTCTTGGTGAACTCCATGAGAACAAGTACTTCTAGGAT
TGTGGTACATCTGCGCATATACACACAGCACACATGTATGTACATTGAAG
GATGTAATCGTGAAACTGCGCAACAAGGGCTGCTCCAGAAGATGCGCGGT
ATGTGGTGTTGGCACTGTTGGCGCTGGGCCACTTGACATCTCGAGTGCCA
AGATTTGGAGGATGAACTTCAACAGGCACAATATGGGCAGTGTAGCATTC
TGCGTCTGGATGGCCACAAGGCCCCTTGCATCGCTTGCATAATGTCTTGC
AGTGGCCAGCCTTGCACTTCGAAGTAGTACTTGGCGTCCAGGTACTTCAT
AGTGCATACGGTGTCACTTTCAGGTATGTTTGTTTTTGTAGCTGCACATG
TGACGTCCATCTGCATGATCTTGTACTTGAAAGGTAAGTGATGGCAACGT
TTTCATCGATTTGTTGTATTGTTTGTGCATGTGTAGGCGCAGGGCTTGCA
TACAAAGTGGTAGTTTGGTCACCCTTTTCCCGGCCGCATCTGCGCTGATC
ATATATACCCGCATCATGTTTGCACACAACGCCGACAGGCGGTGCTGGAC
CTCACTGTGGCCATCAATATGCCCGGCATGGATCTTCTCCTCAAGGTGCG
CCACTTTTTAAAAGGCTTGCTCGTCAAACTTGTTGGCAAGTTGCAACATG
GCAATGACTGTATGTTCCTTCGATGCCATTTTATTCAACACCACTACCTG
GTGATGTGCATTTTCTGTCAACAATTTGCAGCTCAAGCTCATGTGCCTGG
CGCAGGTTCCTTAGTCTATTTCACCTTTTCTTTTTACTGTGCGTCCACAG
AACATTTGTTGACCTGTCATCCTACGCCACAAGTACTGCTGACCTGTGTT
GGTCCCGTCTGATGCGCCTGCAGGTGTTCGGCAAGAAGTTGAATGATGGC
GTCATGGGCGCCAGGTGAGCATGCAGTTGAAGTTGTCAGCCTCGCTGCAG
CCTGGTCTTAACTATAGTACTAAAACTAGTATGTCATGTCATGGCACCCC
AAAGATGGCAGGATGGCGTGAACATACTTGTCGCTGCGTGTGAAGTTTGT
GCTGTCCCCAAAGTACTTCAGCAGGCGTAGTGATGGCAACACCGCATCAT
TTAGTCTGGCGTAGTCAGATTGAAAAGTGAGCATGCCGAAACGCCGCGTA
CAATACCACGCTCAACTCGTCACTTGTTGGAGAATACTACTTTGAGCTTG
TCTACACTGCCTCGCAGTCATCAGAAGCACGGCTGCCATGAAGTGACTGC
AGTTGGCAACCTTTTTGCGTGGCCCAATCATGTATCTGCACGGCTCAATG
TGTGCTGAGGCAATGCAACACACTCATGATGGCGCCGTCCCCCCCTTCCT
CTGCGTTCACAGCGGTGTGCTGTCCGCGCTGATCGTAATCTTCAACTGCT
GGCCCGACAAGCCCAAGGTGAGCACAAAATTTGAAGTGCTGACCGTTTCA
AAACTGTTGAACCCAACATCAAGAAGCAGCATCAGACTTGAAGATTGAAC
TATTGTGTTGAGTGTACCTTGCCTATGGCAATGTGCACATGACAACATCC
ACACGCGAGAAGGCTCACACGCGCATGTGCAATGGCAGCTGCAGCACTTG
CTTGCTGCGCATGACAAGCCGCCCACAAACTAGATGCACACCACTGACAA
TGCCATGCACACACGCCAGCATGCAGTGGCTTGCGCGACGTCGCTGCGCA
TGCAGCAGTGCTCAACTTCTGTGTTCTCATTTAGTCGCCACCCTGCACAG
GGCACCAGCCTCAGGCACCTGACACAAATGCGCCCTGCTTGTGCAATGTC
TGTGGCAGGCGGCAGTGGCGCTTCCACAAGTGGCAGCGACCGCGCCTGCT
GCAGTCGCAGGCAGCGCTGGCAGCACCACTCCCCGAAGCACAAGAACAAC
CTGACTCTTACGACAGCAGCATTTTGGCTCACGATGTAGTCTTCTTGTTT
CAACTGCTGGCGCGCCTTGCCTATCAGGCGCGCTGTTACAAAACACTAAT
AGACTAGACCGCAACAATGCCGCCGCCTGTTTGTGTTTACATGCATGGCG
CTGTGCGTGCGTGTGTGCTTTGATTTTG
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Coding sequence (CDS) from alignment at Contig_60:588748..594375-

>mRNA_6825 ID=mRNA_6825|Name=jgi.p|Trimin1|350307|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=951bp|location=Sequence derived from alignment at Contig_60:588748..594375- (Tribonema minus UTEX_B_3156 )
ATGAGCACGCCAAGTGGTGCAGAGGATGCGTCCGATGAAACTAGCACATC
GCCCGAGCTGGAGCTGCCTGCGATCCCCGTGGCTGATGGCTTCGCCAACA
AAGCTCCCATCAGTCTTGCTGCTTACGTGCAGGCCACACAGAAGCTGGAG
GGACGGGACAAGCTGACTAAGATCGTGCAGTATGGCTCCAGGTTTCTTTT
TTGGTACTTCAAGAACGTGGCGCCCAATGGAGAGCTGGCGGATAAGGCGT
ACTCGCTGTACAGGGTTACCCAGCTCAGCCGCAAGGCCTTCAGGATGGCG
AAAGTGGCGGATGAGGTGGTCCGTATAACAGCGCTCATGGAGAGCAAGCA
GTACCCCAACTTCAAGAGCACGGTCGCCATCCTCAAGTGCGCATCCATGG
GCGCGTTCTGGACGTACGACAACCTTAACTACCTGACGCAGGCAAAGGTC
ATCGGTTACGGCACCGACAGGGCCATGCGAGGTTTCAGCCGCTCGTGGGC
GATCGCCAACGTGGCCATGATCTACCTTGGCTTGCAGACGCTCACGGAGA
CCAGCAAGCGCAGGCAGGCACTGGCGCAGGAGTACAAGAAAGCTGCAGCT
GTTGAGCAAGGCAACGCTGCAGACAGGGAGGTGCAGCGCATCCGCGGCGA
GGCCAAGGCCGCAAACGTGGCACACTTTAGCAGCTGTCTGATGCTCTGCA
AGGCGGTGCTGGACCTCACTGTGGCCATCAATATGCCCGGCATGGATCTT
CTCCTCAAGGTGTTCGGCAAGAAGTTGAATGATGGCGTCATGGGCGCCAG
CGGTGTGCTGTCCGCGCTGATCGTAATCTTCAACTGCTGGCCCGACAAGC
CCAAGGCGGCAGTGGCGCTTCCACAAGTGGCAGCGACCGCGCCTGCTGCA
GTCGCAGGCAGCGCTGGCAGCACCACTCCCCGAAGCACAAGAACAACCTG
A
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