mRNA_6798 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|148939
Unique NamemRNA_6798
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|148939 vs. uniprot
Match: A0A835YXI7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXI7_9STRA)

HSP 1 Score: 119 bits (297), Expect = 3.830e-34
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 LPDSITCDQQVAALLTPETVERVKQIVPALRKHDPGLVVQVQDRLGVHQALQLPYSPV 174
            LPDSITCDQQVAALLTPETVERVKQIVPALRKHDPGLVVQVQDRLGVHQALQLPYSPV
Sbjct:    1 LPDSITCDQQVAALLTPETVERVKQIVPALRKHDPGLVVQVQDRLGVHQALQLPYSPV 58
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148939 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YXI7_9STRA3.830e-34100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_60contigContig_60:375481..375654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|148939|gw1.60.167.1
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId149261
TrackFilteredModels1
ProteinId148939
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148939gene_6798Tribonema minus UTEX_B_3156 geneContig_60 375481..375654 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6798_1exon_6798_1Tribonema minus UTEX_B_3156 exonContig_60 375481..375654 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6798CDS_6798Tribonema minus UTEX_B_3156 CDSContig_60 375481..375654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148939Trimin1|148939|gw1.60.167.1Tribonema minus UTEX_B_3156 polypeptideContig_60 375481..375654 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6798 ID=mRNA_6798|Name=jgi.p|Trimin1|148939|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=174bp|location=Sequence derived from alignment at Contig_60:375481..375654- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCCGGACTCCATCACCTGTGACCAGCAGGTCGCGGCGCTTTTGACGCC
GGAGACTGTGGAGCGGGTCAAGCAAATAGTGCCAGCCCTGCGTAAGCATG
ATCCCGGACTGGTTGTGCAGGTTCAGGACCGACTTGGCGTTCACCAAGCG
CTACAGCTTCCCTACTCGCCAGTG
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protein sequence of jgi.p|Trimin1|148939

>Trimin1|148939|gw1.60.167.1 ID=Trimin1|148939|gw1.60.167.1|Name=jgi.p|Trimin1|148939|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=58bp
LPDSITCDQQVAALLTPETVERVKQIVPALRKHDPGLVVQVQDRLGVHQA
LQLPYSPV
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mRNA from alignment at Contig_60:375481..375654-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6798 ID=mRNA_6798|Name=jgi.p|Trimin1|148939|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=174bp|location=Sequence derived from alignment at Contig_60:375481..375654- (Tribonema minus UTEX_B_3156 )
CTGCCGGACTCCATCACCTGTGACCAGCAGGTCGCGGCGCTTTTGACGCC
GGAGACTGTGGAGCGGGTCAAGCAAATAGTGCCAGCCCTGCGTAAGCATG
ATCCCGGACTGGTTGTGCAGGTTCAGGACCGACTTGGCGTTCACCAAGCG
CTACAGCTTCCCTACTCGCCAGTG
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Coding sequence (CDS) from alignment at Contig_60:375481..375654-

>mRNA_6798 ID=mRNA_6798|Name=jgi.p|Trimin1|148939|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=174bp|location=Sequence derived from alignment at Contig_60:375481..375654- (Tribonema minus UTEX_B_3156 )
CTGCCGGACTCCATCACCTGTGACCAGCAGGTCGCGGCGCTTTTGACGCC
GGAGACTGTGGAGCGGGTCAAGCAAATAGTGCCAGCCCTGCGTAAGCATG
ATCCCGGACTGGTTGTGCAGGTTCAGGACCGACTTGGCGTTCACCAAGCG
CTACAGCTTCCCTACTCGCCAGTG
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