mRNA_6795 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|148702 vs. uniprot
Match: A0A835YNB5_9STRA (RRM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNB5_9STRA) HSP 1 Score: 153 bits (387), Expect = 2.280e-47 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 Query: 1 VLHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVAF 225 VLHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVAF Sbjct: 1 VLHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVAF 75
BLAST of jgi.p|Trimin1|148702 vs. uniprot
Match: D7G2Q3_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2Q3_ECTSI) HSP 1 Score: 120 bits (302), Expect = 1.100e-31 Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = 1 Query: 1 VLHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVAF 225 +LHVSNLTRNVKA HL+EIFG YG V V+LA+DK++ LPKGYAFVEF R +AEQAQLYLDGGQLDGN +KVAF Sbjct: 1 MLHVSNLTRNVKADHLKEIFGSYGKVTSVDLAVDKRVNLPKGYAFVEFVERAEAEQAQLYLDGGQLDGNRIKVAF 75
BLAST of jgi.p|Trimin1|148702 vs. uniprot
Match: A0A7S2XYG7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYG7_9STRA) HSP 1 Score: 119 bits (299), Expect = 1.220e-31 Identity = 55/75 (73.33%), Postives = 64/75 (85.33%), Query Frame = 1 Query: 1 VLHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVAF 225 +LHV+NLTRNVK HL+EIFG YG V KVEL +D+++ LPKGYAFVEF R DAEQAQLY+DGGQLDGN +KVAF Sbjct: 88 MLHVANLTRNVKREHLEEIFGTYGKVKKVELVVDRRVNLPKGYAFVEFDKRVDAEQAQLYMDGGQLDGNVLKVAF 162
BLAST of jgi.p|Trimin1|148702 vs. uniprot
Match: A0A7S2SUR0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUR0_9STRA) HSP 1 Score: 102 bits (253), Expect = 3.950e-25 Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 1 Query: 4 LHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVA 222 LHV+NLTRN+K HL EIFG YG V K E+ +D++ L KG A++EFS R+DA+QAQLYLDG Q+DGN +KVA Sbjct: 17 LHVANLTRNIKEQHLLEIFGTYGKVNKAEVVLDRRTNLTKGLAYIEFSRRSDADQAQLYLDGAQIDGNRIKVA 89
BLAST of jgi.p|Trimin1|148702 vs. uniprot
Match: A0A835PDI1_VANPL (RRM domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PDI1_VANPL) HSP 1 Score: 100 bits (249), Expect = 5.780e-25 Identity = 44/75 (58.67%), Postives = 59/75 (78.67%), Query Frame = 1 Query: 1 VLHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVAF 225 VLH+ +L+RNV AHL+EIF +G V VEL++D+ + LP+GY +VEF RTDAE+A+LY+DGGQ+DGN V V F Sbjct: 35 VLHIDHLSRNVNEAHLKEIFSNFGEVVNVELSMDRNVNLPRGYGYVEFKKRTDAEKARLYMDGGQIDGNIVSVKF 109
BLAST of jgi.p|Trimin1|148702 vs. uniprot
Match: A0A0E0N7V2_ORYRU (RRM domain-containing protein n=1 Tax=Oryza rufipogon TaxID=4529 RepID=A0A0E0N7V2_ORYRU) HSP 1 Score: 101 bits (252), Expect = 1.280e-24 Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 1 Query: 1 VLHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVAF 225 VLH+ +L+RNV AHL+EIFG +G V VEL++D+ + LP+GY ++EF RTDAE+A LY+DGGQ+DGN VK+ F Sbjct: 70 VLHIDHLSRNVNEAHLKEIFGNFGEVVNVELSMDRMVNLPRGYGYIEFKKRTDAEKALLYMDGGQIDGNVVKLRF 144
BLAST of jgi.p|Trimin1|148702 vs. uniprot
Match: B8AWW3_ORYSI (RRM domain-containing protein n=2 Tax=Oryza TaxID=4527 RepID=B8AWW3_ORYSI) HSP 1 Score: 100 bits (249), Expect = 4.350e-24 Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = 1 Query: 1 VLHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVAF 225 VLHV +L+RNV HL+EIF YG V VEL++D+ + LP+GY +VEF NR DAE+A LYLDGGQ+DGN VKV F Sbjct: 70 VLHVDHLSRNVNEDHLKEIFENYGEVVNVELSMDRVVNLPRGYGYVEFKNRADAEKALLYLDGGQIDGNVVKVRF 144
BLAST of jgi.p|Trimin1|148702 vs. uniprot
Match: A0A5J4XY81_9CHLO (Arginine serine-rich splicing factor SR45 transcript I n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XY81_9CHLO) HSP 1 Score: 102 bits (253), Expect = 4.690e-24 Identity = 47/74 (63.51%), Postives = 60/74 (81.08%), Query Frame = 1 Query: 4 LHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVAF 225 LHV +LTRNV+A H+QEIF +GTV VELA+DK + LP+G+A+VEFS R++AE AQ +DGGQLDGN + VAF Sbjct: 136 LHVGHLTRNVQAEHIQEIFSTFGTVKHVELAMDKAVNLPRGFAYVEFSRRSEAEDAQRLMDGGQLDGNQLSVAF 209
BLAST of jgi.p|Trimin1|148702 vs. uniprot
Match: A0A833QX77_9POAL (Arginine/serine-rich protein 45-like protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QX77_9POAL) HSP 1 Score: 102 bits (254), Expect = 5.100e-24 Identity = 45/75 (60.00%), Postives = 61/75 (81.33%), Query Frame = 1 Query: 1 VLHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVAF 225 VLH+ +L+RNV AHL+EIFG +G + VEL++D+ + LP+GY +VEF +RTDAE+A LY+DGGQ+DGN VKV F Sbjct: 111 VLHIDHLSRNVNEAHLKEIFGNFGEIVNVELSMDRLVNLPRGYGYVEFKSRTDAEKALLYMDGGQVDGNVVKVKF 185
BLAST of jgi.p|Trimin1|148702 vs. uniprot
Match: A0A199UFY5_ANACO (Serine/arginine-rich splicing factor SR45 n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199UFY5_ANACO) HSP 1 Score: 99.4 bits (246), Expect = 6.110e-24 Identity = 44/75 (58.67%), Postives = 59/75 (78.67%), Query Frame = 1 Query: 1 VLHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVAF 225 VLH+ +L+RNV AHL+EIFG +G V VEL++D+ + LP+GY +VEF R DAE+A LY+DGGQ+DGN V+V F Sbjct: 107 VLHIDHLSRNVNEAHLKEIFGNFGDVVNVELSMDRIVNLPRGYGYVEFKKRADAEKALLYMDGGQIDGNVVRVKF 181 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148702 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6795 ID=mRNA_6795|Name=jgi.p|Trimin1|148702|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=225bp|location=Sequence derived from alignment at Contig_60:355055..355279- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGCTGCATGTCAGCAACCTCACGCGCAACGTGAAAGCAGCCCATCTGCAback to top protein sequence of jgi.p|Trimin1|148702 >Trimin1|148702|gw1.60.163.1 ID=Trimin1|148702|gw1.60.163.1|Name=jgi.p|Trimin1|148702|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=75bp VLHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNback to top mRNA from alignment at Contig_60:355055..355279- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6795 ID=mRNA_6795|Name=jgi.p|Trimin1|148702|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=225bp|location=Sequence derived from alignment at Contig_60:355055..355279- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_60:355055..355279- >mRNA_6795 ID=mRNA_6795|Name=jgi.p|Trimin1|148702|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=225bp|location=Sequence derived from alignment at Contig_60:355055..355279- (Tribonema minus UTEX_B_3156 )back to top |