mRNA_6795 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|148702
Unique NamemRNA_6795
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|148702 vs. uniprot
Match: A0A835YNB5_9STRA (RRM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNB5_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.280e-47
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1
Query:    1 VLHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVAF 225
            VLHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVAF
Sbjct:    1 VLHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVAF 75          
BLAST of jgi.p|Trimin1|148702 vs. uniprot
Match: D7G2Q3_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2Q3_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.100e-31
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    1 VLHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVAF 225
            +LHVSNLTRNVKA HL+EIFG YG V  V+LA+DK++ LPKGYAFVEF  R +AEQAQLYLDGGQLDGN +KVAF
Sbjct:    1 MLHVSNLTRNVKADHLKEIFGSYGKVTSVDLAVDKRVNLPKGYAFVEFVERAEAEQAQLYLDGGQLDGNRIKVAF 75          
BLAST of jgi.p|Trimin1|148702 vs. uniprot
Match: A0A7S2XYG7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYG7_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.220e-31
Identity = 55/75 (73.33%), Postives = 64/75 (85.33%), Query Frame = 1
Query:    1 VLHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVAF 225
            +LHV+NLTRNVK  HL+EIFG YG V KVEL +D+++ LPKGYAFVEF  R DAEQAQLY+DGGQLDGN +KVAF
Sbjct:   88 MLHVANLTRNVKREHLEEIFGTYGKVKKVELVVDRRVNLPKGYAFVEFDKRVDAEQAQLYMDGGQLDGNVLKVAF 162          
BLAST of jgi.p|Trimin1|148702 vs. uniprot
Match: A0A7S2SUR0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUR0_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.950e-25
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    4 LHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVA 222
            LHV+NLTRN+K  HL EIFG YG V K E+ +D++  L KG A++EFS R+DA+QAQLYLDG Q+DGN +KVA
Sbjct:   17 LHVANLTRNIKEQHLLEIFGTYGKVNKAEVVLDRRTNLTKGLAYIEFSRRSDADQAQLYLDGAQIDGNRIKVA 89          
BLAST of jgi.p|Trimin1|148702 vs. uniprot
Match: A0A835PDI1_VANPL (RRM domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PDI1_VANPL)

HSP 1 Score: 100 bits (249), Expect = 5.780e-25
Identity = 44/75 (58.67%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    1 VLHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVAF 225
            VLH+ +L+RNV  AHL+EIF  +G V  VEL++D+ + LP+GY +VEF  RTDAE+A+LY+DGGQ+DGN V V F
Sbjct:   35 VLHIDHLSRNVNEAHLKEIFSNFGEVVNVELSMDRNVNLPRGYGYVEFKKRTDAEKARLYMDGGQIDGNIVSVKF 109          
BLAST of jgi.p|Trimin1|148702 vs. uniprot
Match: A0A0E0N7V2_ORYRU (RRM domain-containing protein n=1 Tax=Oryza rufipogon TaxID=4529 RepID=A0A0E0N7V2_ORYRU)

HSP 1 Score: 101 bits (252), Expect = 1.280e-24
Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:    1 VLHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVAF 225
            VLH+ +L+RNV  AHL+EIFG +G V  VEL++D+ + LP+GY ++EF  RTDAE+A LY+DGGQ+DGN VK+ F
Sbjct:   70 VLHIDHLSRNVNEAHLKEIFGNFGEVVNVELSMDRMVNLPRGYGYIEFKKRTDAEKALLYMDGGQIDGNVVKLRF 144          
BLAST of jgi.p|Trimin1|148702 vs. uniprot
Match: B8AWW3_ORYSI (RRM domain-containing protein n=2 Tax=Oryza TaxID=4527 RepID=B8AWW3_ORYSI)

HSP 1 Score: 100 bits (249), Expect = 4.350e-24
Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    1 VLHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVAF 225
            VLHV +L+RNV   HL+EIF  YG V  VEL++D+ + LP+GY +VEF NR DAE+A LYLDGGQ+DGN VKV F
Sbjct:   70 VLHVDHLSRNVNEDHLKEIFENYGEVVNVELSMDRVVNLPRGYGYVEFKNRADAEKALLYLDGGQIDGNVVKVRF 144          
BLAST of jgi.p|Trimin1|148702 vs. uniprot
Match: A0A5J4XY81_9CHLO (Arginine serine-rich splicing factor SR45 transcript I n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XY81_9CHLO)

HSP 1 Score: 102 bits (253), Expect = 4.690e-24
Identity = 47/74 (63.51%), Postives = 60/74 (81.08%), Query Frame = 1
Query:    4 LHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVAF 225
            LHV +LTRNV+A H+QEIF  +GTV  VELA+DK + LP+G+A+VEFS R++AE AQ  +DGGQLDGN + VAF
Sbjct:  136 LHVGHLTRNVQAEHIQEIFSTFGTVKHVELAMDKAVNLPRGFAYVEFSRRSEAEDAQRLMDGGQLDGNQLSVAF 209          
BLAST of jgi.p|Trimin1|148702 vs. uniprot
Match: A0A833QX77_9POAL (Arginine/serine-rich protein 45-like protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QX77_9POAL)

HSP 1 Score: 102 bits (254), Expect = 5.100e-24
Identity = 45/75 (60.00%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    1 VLHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVAF 225
            VLH+ +L+RNV  AHL+EIFG +G +  VEL++D+ + LP+GY +VEF +RTDAE+A LY+DGGQ+DGN VKV F
Sbjct:  111 VLHIDHLSRNVNEAHLKEIFGNFGEIVNVELSMDRLVNLPRGYGYVEFKSRTDAEKALLYMDGGQVDGNVVKVKF 185          
BLAST of jgi.p|Trimin1|148702 vs. uniprot
Match: A0A199UFY5_ANACO (Serine/arginine-rich splicing factor SR45 n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199UFY5_ANACO)

HSP 1 Score: 99.4 bits (246), Expect = 6.110e-24
Identity = 44/75 (58.67%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    1 VLHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVAF 225
            VLH+ +L+RNV  AHL+EIFG +G V  VEL++D+ + LP+GY +VEF  R DAE+A LY+DGGQ+DGN V+V F
Sbjct:  107 VLHIDHLSRNVNEAHLKEIFGNFGDVVNVELSMDRIVNLPRGYGYVEFKKRADAEKALLYMDGGQIDGNVVRVKF 181          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148702 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YNB5_9STRA2.280e-47100.00RRM domain-containing protein (Fragment) n=1 Tax=T... [more]
D7G2Q3_ECTSI1.100e-3176.00RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2XYG7_9STRA1.220e-3173.33Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa... [more]
A0A7S2SUR0_9STRA3.950e-2563.01Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835PDI1_VANPL5.780e-2558.67RRM domain-containing protein n=1 Tax=Vanilla plan... [more]
A0A0E0N7V2_ORYRU1.280e-2458.67RRM domain-containing protein n=1 Tax=Oryza rufipo... [more]
B8AWW3_ORYSI4.350e-2462.67RRM domain-containing protein n=2 Tax=Oryza TaxID=... [more]
A0A5J4XY81_9CHLO4.690e-2463.51Arginine serine-rich splicing factor SR45 transcri... [more]
A0A833QX77_9POAL5.100e-2460.00Arginine/serine-rich protein 45-like protein n=1 T... [more]
A0A199UFY5_ANACO6.110e-2458.67Serine/arginine-rich splicing factor SR45 n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_60contigContig_60:355055..355279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|148702|gw1.60.163.1
BRITEko00000,ko00001,ko00002,ko03019
KEGG ModuleM00430
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG koko:K14325
DescriptionRNA binding
COG categoryH
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0118@1|root,KOG0118@2759|Eukaryota
Evalue1.8e-32
Seed ortholog2880.D7G2Q3
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-11_003090.1
TranscriptId149024
TrackFilteredModels1
ProteinId148702
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148702gene_6795Tribonema minus UTEX_B_3156 geneContig_60 355055..355279 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6795_1exon_6795_1Tribonema minus UTEX_B_3156 exonContig_60 355055..355279 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6795CDS_6795Tribonema minus UTEX_B_3156 CDSContig_60 355055..355279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148702Trimin1|148702|gw1.60.163.1Tribonema minus UTEX_B_3156 polypeptideContig_60 355055..355279 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6795 ID=mRNA_6795|Name=jgi.p|Trimin1|148702|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=225bp|location=Sequence derived from alignment at Contig_60:355055..355279- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGCTGCATGTCAGCAACCTCACGCGCAACGTGAAAGCAGCCCATCTGCA
GGAGATCTTTGGCTGCTACGGCACAGTCGCCAAGGTAGAGCTGGCCATAG
ACAAGAAGCTGGGGCTGCCGAAGGGCTATGCCTTCGTTGAGTTCTCCAAC
AGGACAGACGCAGAGCAGGCCCAGCTGTACCTCGACGGAGGCCAACTGGA
TGGCAACTACGTCAAGGTGGCCTTC
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protein sequence of jgi.p|Trimin1|148702

>Trimin1|148702|gw1.60.163.1 ID=Trimin1|148702|gw1.60.163.1|Name=jgi.p|Trimin1|148702|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=75bp
VLHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSN
RTDAEQAQLYLDGGQLDGNYVKVAF
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mRNA from alignment at Contig_60:355055..355279-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6795 ID=mRNA_6795|Name=jgi.p|Trimin1|148702|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=225bp|location=Sequence derived from alignment at Contig_60:355055..355279- (Tribonema minus UTEX_B_3156 )
GTGCTGCATGTCAGCAACCTCACGCGCAACGTGAAAGCAGCCCATCTGCA GGAGATCTTTGGCTGCTACGGCACAGTCGCCAAGGTAGAGCTGGCCATAG ACAAGAAGCTGGGGCTGCCGAAGGGCTATGCCTTCGTTGAGTTCTCCAAC AGGACAGACGCAGAGCAGGCCCAGCTGTACCTCGACGGAGGCCAACTGGA TGGCAACTACGTCAAGGTGGCCTTC
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Coding sequence (CDS) from alignment at Contig_60:355055..355279-

>mRNA_6795 ID=mRNA_6795|Name=jgi.p|Trimin1|148702|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=225bp|location=Sequence derived from alignment at Contig_60:355055..355279- (Tribonema minus UTEX_B_3156 )
GTGCTGCATGTCAGCAACCTCACGCGCAACGTGAAAGCAGCCCATCTGCA
GGAGATCTTTGGCTGCTACGGCACAGTCGCCAAGGTAGAGCTGGCCATAG
ACAAGAAGCTGGGGCTGCCGAAGGGCTATGCCTTCGTTGAGTTCTCCAAC
AGGACAGACGCAGAGCAGGCCCAGCTGTACCTCGACGGAGGCCAACTGGA
TGGCAACTACGTCAAGGTGGCCTTC
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