mRNA_6770 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|80439
Unique NamemRNA_6770
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|80439 vs. uniprot
Match: A0A835YP11_9STRA (Acyl-CoA-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP11_9STRA)

HSP 1 Score: 167 bits (423), Expect = 2.850e-51
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 2 
Query:   83 MEAQFLEAAERVKTATVATNEDKLKLYALFKQANAGDCSTSRPGMFDLQGKAKWDAWDALKGKTKEEAMAEYIAQVESIMAKQP 334
            MEAQFLEAAERVKTATVATNEDKLKLYALFKQANAGDCSTSRPGMFDLQGKAKWDAWDALKGKTKEEAMAEYIAQVESIMAKQP
Sbjct:    1 MEAQFLEAAERVKTATVATNEDKLKLYALFKQANAGDCSTSRPGMFDLQGKAKWDAWDALKGKTKEEAMAEYIAQVESIMAKQP 84
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BLAST of jgi.p|Trimin1|80439 vs. uniprot
Match: A0A087SP04_AUXPR (Acyl-CoA-binding protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SP04_AUXPR)

HSP 1 Score: 97.8 bits (242), Expect = 9.400e-24
Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 2 
Query:   83 MEAQFLEAAERVKTATVAT-NEDKLKLYALFKQANAGDCSTSRPGMFDLQGKAKWDAWDALKGKTKEEAMAEYIAQVESIMAK 328
            +E  F +AAE  KT   AT N++KL LYALFKQ   GD +TSRPG+FDL+GKAKWDAWD  KGK KE A  +YIA+V  + AK
Sbjct:    3 LEEDFNKAAEEAKTLPEATTNDEKLILYALFKQGTVGDVNTSRPGVFDLKGKAKWDAWDKQKGKDKETAQKDYIAKVAELKAK 85
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BLAST of jgi.p|Trimin1|80439 vs. uniprot
Match: G4ZPG3_PHYSP (ACB domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZPG3_PHYSP)

HSP 1 Score: 97.4 bits (241), Expect = 1.370e-23
Identity = 50/80 (62.50%), Postives = 62/80 (77.50%), Query Frame = 2 
Query:   77 SDMEAQFLEAAERVKTATVA-TNEDKLKLYALFKQANAGDCSTSRPGMFDLQGKAKWDAWDALKGKTKEEAMAEYIAQVE 313
            SD++AQF  AA  VKT T + TN++KL LYA +KQA  GD +TS PGMFDL GKAKW+AW+A KG +KE+AM  YIA+VE
Sbjct:    2 SDLQAQFEAAAALVKTFTKSPTNDEKLALYAFYKQATVGDNTTSAPGMFDLTGKAKWNAWNAKKGLSKEDAMTAYIAEVE 81
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BLAST of jgi.p|Trimin1|80439 vs. uniprot
Match: A0A672IIP0_SALFA (ACB domain-containing protein n=4 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672IIP0_SALFA)

HSP 1 Score: 97.4 bits (241), Expect = 1.410e-23
Identity = 48/85 (56.47%), Postives = 62/85 (72.94%), Query Frame = 2 
Query:   77 SDMEAQFLEAAERVKTATVA-TNEDKLKLYALFKQANAGDCSTSRPGMFDLQGKAKWDAWDALKGKTKEEAMAEYIAQVESIMAK 328
            +D++A+F  AA  VK       +E+ L++YALFKQAN GD +T+RPGM D  GKAKWDAW+ LKGK+KE+AM EYIA VE +  K
Sbjct:    2 TDLQAKFEAAAAEVKQLKAKPADEEMLRIYALFKQANVGDVNTARPGMLDFTGKAKWDAWEKLKGKSKEDAMNEYIALVEELKGK 86
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BLAST of jgi.p|Trimin1|80439 vs. uniprot
Match: A0A6P4ZVR7_BRABE (acyl-CoA-binding protein-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZVR7_BRABE)

HSP 1 Score: 96.7 bits (239), Expect = 2.670e-23
Identity = 46/82 (56.10%), Postives = 64/82 (78.05%), Query Frame = 2 
Query:   86 EAQFLEAAERVKTA-TVATNEDKLKLYALFKQANAGDCSTSRPGMFDLQGKAKWDAWDALKGKTKEEAMAEYIAQVESIMAK 328
            EA+F +AAE VKT  +  T+E+ L++YALFKQA  GD +T+RPGM D +GKAKWDAW+A KG ++E+A A+Y+A+VE +  K
Sbjct:    3 EAEFEKAAEEVKTLKSTPTDEEMLEIYALFKQAKVGDVNTARPGMLDFKGKAKWDAWEAKKGMSQEDARAKYVAKVEELKGK 84
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BLAST of jgi.p|Trimin1|80439 vs. uniprot
Match: A0A815EIY0_9BILA (Hypothetical protein n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A815EIY0_9BILA)

HSP 1 Score: 96.3 bits (238), Expect = 3.570e-23
Identity = 50/83 (60.24%), Postives = 61/83 (73.49%), Query Frame = 2 
Query:   86 EAQFLEAAERVKTATVATNEDKL-KLYALFKQANAGDCSTSRPGMFDLQGKAKWDAWDALKGKTKEEAMAEYIAQVESIMAKQ 331
            +A+F +AAE VK  +    +D+L KLY LFKQAN GD +T +PGMFDL+GK KWDAWDA KGK+KE A  EYIA  E + AKQ
Sbjct:    3 QAEFDKAAEDVKNLSKKPTDDELLKLYGLFKQANFGDNNTDKPGMFDLKGKYKWDAWDANKGKSKETARQEYIALAEQLKAKQ 85
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BLAST of jgi.p|Trimin1|80439 vs. uniprot
Match: A0A813RUK3_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A813RUK3_9BILA)

HSP 1 Score: 95.1 bits (235), Expect = 9.860e-23
Identity = 48/84 (57.14%), Postives = 61/84 (72.62%), Query Frame = 2 
Query:   83 MEAQFLEAAERVKTAT-VATNEDKLKLYALFKQANAGDCSTSRPGMFDLQGKAKWDAWDALKGKTKEEAMAEYIAQVESIMAKQ 331
            M A+F +AAE VK  +   TNE+KL+LY  FKQ N GD +T++PGMFDL+GKAKWDAW+  KG +KEEA   YI  V+ + AKQ
Sbjct:    1 MSAEFNQAAEDVKKLSKTPTNEEKLQLYGWFKQVNFGDVNTAKPGMFDLEGKAKWDAWNKNKGMSKEEAEKNYIQLVKQLQAKQ 84
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BLAST of jgi.p|Trimin1|80439 vs. uniprot
Match: A0A820A6L4_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820A6L4_9BILA)

HSP 1 Score: 95.1 bits (235), Expect = 1.010e-22
Identity = 48/83 (57.83%), Postives = 62/83 (74.70%), Query Frame = 2 
Query:   86 EAQFLEAAERVKTATVATNEDKL-KLYALFKQANAGDCSTSRPGMFDLQGKAKWDAWDALKGKTKEEAMAEYIAQVESIMAKQ 331
            +A F +AAE VK  +    +D+L KLY LFKQA  GD +T++PGMFDL+GK KW+AWDA KGK+KE A  EY+A VE++ AKQ
Sbjct:    3 QAAFDKAAEEVKNLSKKPTDDELLKLYGLFKQATVGDTNTAKPGMFDLKGKYKWEAWDANKGKSKETAQNEYVAFVEALKAKQ 85
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BLAST of jgi.p|Trimin1|80439 vs. uniprot
Match: UPI001C4C3C2B (acyl-CoA-binding protein-like n=1 Tax=Plectropomus leopardus TaxID=160734 RepID=UPI001C4C3C2B)

HSP 1 Score: 95.1 bits (235), Expect = 1.170e-22
Identity = 47/85 (55.29%), Postives = 63/85 (74.12%), Query Frame = 2 
Query:   77 SDMEAQFLEAAERVKTATVA-TNEDKLKLYALFKQANAGDCSTSRPGMFDLQGKAKWDAWDALKGKTKEEAMAEYIAQVESIMAK 328
            +D++A+F  AA  VKT T   T+E+ L++Y+LFKQA+ GD +T RPGMFD  GKAKWDAW   +GK+KE+AM EYI+ VE +  K
Sbjct:    2 TDLQAKFDTAAAEVKTLTAKPTDEEMLQVYSLFKQASVGDVNTDRPGMFDFTGKAKWDAWKKQEGKSKEDAMNEYISLVEELKKK 86
[Close]
BLAST of jgi.p|Trimin1|80439 vs. uniprot
Match: UPI001BD22A2C (acyl-CoA-binding protein n=1 Tax=Cheilinus undulatus TaxID=241271 RepID=UPI001BD22A2C)

HSP 1 Score: 94.7 bits (234), Expect = 1.600e-22
Identity = 46/85 (54.12%), Postives = 64/85 (75.29%), Query Frame = 2 
Query:   77 SDMEAQFLEAAERVKTATVA-TNEDKLKLYALFKQANAGDCSTSRPGMFDLQGKAKWDAWDALKGKTKEEAMAEYIAQVESIMAK 328
            +D+++QF +AAE VKT     ++E+ L++Y+LFKQA  GD +T+RPGMFD  GKAKWDAW+  KGK++E+AM EYI  VE +  K
Sbjct:    2 ADLKSQFDKAAEEVKTLKAKPSDEEMLQVYSLFKQATVGDVNTTRPGMFDFTGKAKWDAWEKQKGKSQEDAMNEYIKLVEQLKEK 86
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|80439 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YP11_9STRA2.850e-51100.00Acyl-CoA-binding protein n=1 Tax=Tribonema minus T... [more]
A0A087SP04_AUXPR9.400e-2460.24Acyl-CoA-binding protein n=2 Tax=Auxenochlorella p... [more]
G4ZPG3_PHYSP1.370e-2362.50ACB domain-containing protein n=3 Tax=Phytophthora... [more]
A0A672IIP0_SALFA1.410e-2356.47ACB domain-containing protein n=4 Tax=Salarias fas... [more]
A0A6P4ZVR7_BRABE2.670e-2356.10acyl-CoA-binding protein-like n=1 Tax=Branchiostom... [more]
A0A815EIY0_9BILA3.570e-2360.24Hypothetical protein n=1 Tax=Rotaria sordida TaxID... [more]
A0A813RUK3_9BILA9.860e-2357.14Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A820A6L4_9BILA1.010e-2257.83Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 ... [more]
UPI001C4C3C2B1.170e-2255.29acyl-CoA-binding protein-like n=1 Tax=Plectropomus... [more]
UPI001BD22A2C1.600e-2254.12acyl-CoA-binding protein n=1 Tax=Cheilinus undulat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_60contigContig_60:247688..248975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|80439|CE80438_59
BRITEko00000,ko00001
KEGG Pathwayko03320,map03320
KEGG koko:K08762
DescriptionAcyl CoA binding protein
COG categoryI
Max annot lvl3041|Chlorophyta
EggNOG OGsCOG4281@1|root,KOG0817@2759|Eukaryota,37VEJ@33090|Viridiplantae,34IGT@3041|Chlorophyta
Evalue8.67e-27
Seed ortholog38833.XP_003058249.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAcyl-CoA binding protein
Ec32 orthologEc-05_006740.1
TranscriptId80761
TrackFilteredModels1
ProteinId80439
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|80439gene_6770Tribonema minus UTEX_B_3156 geneContig_60 247688..248975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|80439Trimin1|80439|CE80438_59Tribonema minus UTEX_B_3156 polypeptideContig_60 247896..248829 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6770_1exon_6770_1Tribonema minus UTEX_B_3156 exonContig_60 247688..247738 +
exon_6770_2exon_6770_2Tribonema minus UTEX_B_3156 exonContig_60 247865..247916 +
exon_6770_3exon_6770_3Tribonema minus UTEX_B_3156 exonContig_60 248596..248975 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6770UTR5_6770Tribonema minus UTEX_B_3156 five_prime_UTRContig_60 247688..247738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6770CDS_6770Tribonema minus UTEX_B_3156 CDSContig_60 247896..247916 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6770UTR3_6770Tribonema minus UTEX_B_3156 three_prime_UTRContig_60 248830..248975 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6770 ID=mRNA_6770|Name=jgi.p|Trimin1|80439|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=483bp|location=Sequence derived from alignment at Contig_60:247688..248975+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCCCACCGAGAGCCTAGCTGCGGGTGTGAGCAGCCGAGCTGCAAACAAA
GGCAGGTGCCGGAGCAGGAGTCTCGCTCGGACATGGAGGCTCAATTTCTG
GAGGCAGCAGAGCGGGTGAAGACTGCAACAGTCGCCACAAACGAAGACAA
GCTCAAGCTGTACGCGCTGTTCAAGCAGGCCAACGCAGGCGACTGCAGCA
CCTCCAGGCCTGGCATGTTTGACCTGCAAGGCAAGGCCAAGTGGGACGCG
TGGGATGCCCTCAAGGGCAAGACAAAAGAAGAGGCAATGGCAGAGTACAT
TGCGCAAGTGGAGAGCATCATGGCCAAGCAGCCGTGAACTTCCCCCCGTC
CCCCCCACAGCTCCCTCTTTGGCATTTGCTCATGTGCAAGCGTTCCGACG
GTTATCAACAGACGCTGGGAAGCCACGGACTCCTGGCTACTACGTACCCT
AGGGGTGCGCGCAAAATTCAGTAGCAGCCTTTG
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protein sequence of jgi.p|Trimin1|80439

>Trimin1|80439|CE80438_59 ID=Trimin1|80439|CE80438_59|Name=jgi.p|Trimin1|80439|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=85bp
MEAQFLEAAERVKTATVATNEDKLKLYALFKQANAGDCSTSRPGMFDLQG
KAKWDAWDALKGKTKEEAMAEYIAQVESIMAKQP*
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mRNA from alignment at Contig_60:247688..248975+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6770 ID=mRNA_6770|Name=jgi.p|Trimin1|80439|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1288bp|location=Sequence derived from alignment at Contig_60:247688..248975+ (Tribonema minus UTEX_B_3156 )
TGCCCACCGAGAGCCTAGCTGCGGGTGTGAGCAGCCGAGCTGCAAACAAA
GGTGAGAACTTTGAGTTCTTGATTCTGTGTGCTTCGCATGGATGCATATC
TGCATGGATGCATGATCCACATGCATGATATTCGCTTCTCATGTTCCTGC
GCACTATGTCATGCTCCTATCTCGCAGGCAGGTGCCGGAGCAGGAGTCTC
GCTCGGACATGGAGGCTCAATTTCTGGAGGCAAGCTTGAATCAACACAAT
TGATGTCTGTGCTACTACCATGTAGCATGCTATCTGTGAGGTGTGTGTGT
CGTGCAGCTGGGCCATCATGTAAGGGAGGCTTCATGATGCTCAGAAAGCT
GTGTTGATATGTCTCCTCTCCGACAACAAAGTGGCAGCCGTAGGCGCTTG
CAGAGGATTCTGGGGACTAGAAAAACACGTGCACTGTACAGTACGGTCCG
AGGTGGAAGCTGCGAAAGTAATGTCATCAGGTGTGCGCAAGCGAGTTGGC
TGTCAGATTGGTGAAACATCAATGGTCATTACCGAACTGCCTGACAGCAA
CCGCTTGTACGTGTGGTACGTGTGAAGTCATGGCCTGACACTTCGGATAG
TGTCTATGTTCCAACAACAGGTATCGCTTGCATGACGTGCTCAAATCCCA
GCTGACAGCAGTATCATTGGACACGTGCATACATCTCAAGGCCAGTACCA
CATGCGCCAGGACCCGACTTGTACTGACAATTGCAGTGGAGATTACATGG
CGCCTGCTGGTGACAGGCACTAGAGTTCTGTACTCGTGTTGACAACAACT
TGCCAAAAAACTGCCTCTTGCTGATGATGGCAGCTTGTCGTGAACCTCGC
TTTGCTGAATGACACTGATTCTGCTGCTGCTTCACGATCGGTACCTCTAC
GGTTGCAGGCAGCAGAGCGGGTGAAGACTGCAACAGTCGCCACAAACGAA
GACAAGCTCAAGCTGTACGCGCTGTTCAAGCAGGCCAACGCAGGCGACTG
CAGCACCTCCAGGCCTGGCATGTTTGACCTGCAAGGCAAGGCCAAGTGGG
ACGCGTGGGATGCCCTCAAGGGCAAGACAAAAGAAGAGGCAATGGCAGAG
TACATTGCGCAAGTGGAGAGCATCATGGCCAAGCAGCCGTGAACTTCCCC
CCGTCCCCCCCACAGCTCCCTCTTTGGCATTTGCTCATGTGCAAGCGTTC
CGACGGTTATCAACAGACGCTGGGAAGCCACGGACTCCTGGCTACTACGT
ACCCTAGGGGTGCGCGCAAAATTCAGTAGCAGCCTTTG
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Coding sequence (CDS) from alignment at Contig_60:247688..248975+

>mRNA_6770 ID=mRNA_6770|Name=jgi.p|Trimin1|80439|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=255bp|location=Sequence derived from alignment at Contig_60:247688..248975+ (Tribonema minus UTEX_B_3156 )
ATGGAGGCTCAATTTCTGGAGGCAGCAGAGCGGGTGAAGACTGCAACAGT
CGCCACAAACGAAGACAAGCTCAAGCTGTACGCGCTGTTCAAGCAGGCCA
ACGCAGGCGACTGCAGCACCTCCAGGCCTGGCATGTTTGACCTGCAAGGC
AAGGCCAAGTGGGACGCGTGGGATGCCCTCAAGGGCAAGACAAAAGAAGA
GGCAATGGCAGAGTACATTGCGCAAGTGGAGAGCATCATGGCCAAGCAGC
CGTGA
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