mRNA_6758 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|156039 vs. uniprot
Match: A0A836CAB1_9STRA (Aspartic peptidase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAB1_9STRA) HSP 1 Score: 379 bits (973), Expect = 2.090e-133 Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1
Query: 1 GAGTHVAYVYVGTPPQRVSVILDTGSSNTAFPCTGCQGCGQHEDPYWDRSASSTAQVSSCQQCVGDYTCTAAERCVFSQYYAEGSGWTAYQVEDTFYVGVPVQQGTAADKKHDDVSIDFSFGCVQSQTGLFVTQPEDGIMGMAMSDATLVPQLAKKGLIPHETFSLCFSYDGGYMVLGG 537
GAGTHVAYVYVGTPPQRVSVILDTGSSNTAFPCTGCQGCGQHEDPYWDRSASSTAQVSSCQQCVGDYTCTAAERCVFSQYYAEGSGWTAYQVEDTFYVGVPVQQGTAADKKHDDVSIDFSFGCVQSQTGLFVTQPEDGIMGMAMSDATLVPQLAKKGLIPHETFSLCFSYDGGYMVLGG
Sbjct: 1 GAGTHVAYVYVGTPPQRVSVILDTGSSNTAFPCTGCQGCGQHEDPYWDRSASSTAQVSSCQQCVGDYTCTAAERCVFSQYYAEGSGWTAYQVEDTFYVGVPVQQGTAADKKHDDVSIDFSFGCVQSQTGLFVTQPEDGIMGMAMSDATLVPQLAKKGLIPHETFSLCFSYDGGYMVLGG 179
BLAST of jgi.p|Trimin1|156039 vs. uniprot
Match: A0A835ZHP7_9STRA (Aspartic peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHP7_9STRA) HSP 1 Score: 228 bits (582), Expect = 1.190e-69 Identity = 111/179 (62.01%), Postives = 129/179 (72.07%), Query Frame = 1
Query: 1 GAGTHVAYVYVGTPPQRVSVILDTGSSNTAFPCTGCQGCGQHEDPYWDRSASSTAQVSSCQQCVGDYTCTAAERCVFSQYYAEGSGWTAYQVEDTFYVGVPVQQGTAADKKHDDVSIDFSFGCVQSQTGLFVTQPEDGIMGMAMSDATLVPQLAKKGLIPHETFSLCFSYDGGYMVLGG 537
G GTH+AYVYVGTPPQRVSVILDTGS TAFPC GC+ CG H D YWD SSTA ++ C C G++ C A +RCVFSQ Y+EGS W+A+QV D Y G+ Q T D +SIDF FGC+ SQTGLF TQ DGIMGM++S+ TLV QL +KGL+ E FSLCF Y GG MVLGG
Sbjct: 11 GYGTHIAYVYVGTPPQRVSVILDTGSHFTAFPCKGCKACGDHTDSYWDFDLSSTATLTKCPDCHGNFNCGANQRCVFSQSYSEGSSWSAFQVIDKLYTGLTTLQDTPPDDAA--LSIDFMFGCINSQTGLFNTQLADGIMGMSVSEFTLVWQLHQKGLLAQEKFSLCFDYGGGVMVLGG 187
BLAST of jgi.p|Trimin1|156039 vs. uniprot
Match: A0A6H5JRT4_9PHAE (Peptidase A1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRT4_9PHAE) HSP 1 Score: 219 bits (557), Expect = 3.590e-63 Identity = 103/180 (57.22%), Postives = 128/180 (71.11%), Query Frame = 1
Query: 1 GAGTHVAYVYVGTPPQRVSVILDTGSSNTAFPCTGCQGCGQHEDPYWDRSASSTAQVSSCQQCVGDYTCTAAERCVFSQYYAEGSGWTAYQVEDTFYVG-VPVQQGTAADKKHDDVSIDFSFGCVQSQTGLFVTQPEDGIMGMAMSDATLVPQLAKKGLIPHETFSLCFSYDGGYMVLGG 537
G GTH AYVY GTPPQRVSVI+DTGS TAFPC+GC+ CG H DP+WD+S S+++ + +C+ C G + C +RC FSQ Y+EGS WTAYQVED +VG + +QQ + +++F FGC++SQTGLF TQ DGIMGM+ TLV QLAK G I TFSLCF +GG MVLGG
Sbjct: 122 GWGTHFAYVYAGTPPQRVSVIIDTGSHFTAFPCSGCKNCGSHTDPHWDQSKSTSSHIVTCEDCHGSFRCQRDKRCGFSQRYSEGSSWTAYQVEDVLWVGELTLQQSEKINHDESAYAVEFMFGCIESQTGLFKTQLADGIMGMSADSHTLVWQLAKAGKIKERTFSLCFGKNGGTMVLGG 301
BLAST of jgi.p|Trimin1|156039 vs. uniprot
Match: A0A835ZJF3_9STRA (Aspartic peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJF3_9STRA) HSP 1 Score: 211 bits (537), Expect = 1.070e-60 Identity = 100/179 (55.87%), Postives = 125/179 (69.83%), Query Frame = 1
Query: 1 GAGTHVAYVYVGTPPQRVSVILDTGSSNTAFPCTGCQGCGQHEDPYWDRSASSTAQVSSCQQCVGDYTCTAAERCVFSQYYAEGSGWTAYQVEDTFYVGVPVQQGTAADKKHDDVSIDFSFGCVQSQTGLFVTQPEDGIMGMAMSDATLVPQLAKKGLIPHETFSLCFSYDGGYMVLGG 537
G GTH+AY+YVGTPPQRVSVI+DTGS TAFPC GCQ CG+H DPYWD +ASSTA++++C C G +TC + +RC++SQ Y+EGS W A+QV DT + G P A + F+FGC+ SQTGLF TQ DGIMGM+ S++TLV L + +P SLCF GG MVLGG
Sbjct: 6 GYGTHIAYLYVGTPPQRVSVIIDTGSHLTAFPCKGCQACGKHTDPYWDFAASSTAKITTCAACKGTFTCGSQDRCIYSQSYSEGSSWHAFQVLDTVFAG-PASAADVAPAAAAASGVGFAFGCIDSQTGLFNTQLADGIMGMSASESTLVWTLHRAHRVPALALSLCFGTGGGAMVLGG 183
BLAST of jgi.p|Trimin1|156039 vs. uniprot
Match: A0A7S3YC94_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YC94_HETAK) HSP 1 Score: 202 bits (515), Expect = 6.090e-60 Identity = 103/179 (57.54%), Postives = 121/179 (67.60%), Query Frame = 1
Query: 1 GAGTHVAYVYVGTPPQRVSVILDTGSSNTAFPCTGCQGCGQHEDPYWDRSASSTAQVSSCQQCVGDYTCTAAERCVFSQYYAEGSGWTAYQVEDTFYVGVPVQQGTAADKKHDDVSIDFSFGCVQSQTGLFVTQPEDGIMGMAMSDATLVPQLAKKGLIPHETFSLCFSYDGGYMVLGG 537
G GTH AYVYVGTPPQRVSVI+DTGS TAFPC GC GCG H DPY+D S+SST C +C T A+ +C FSQ Y+EGS W AYQV D FY GV V A + D++IDF FGC S+TGLF TQ DGIMGM+MS +LV L K G + H F++CF+ +GG M LGG
Sbjct: 65 GYGTHFAYVYVGTPPQRVSVIVDTGSHYTAFPCKGCSGCGSHTDPYFDLSSSSTGHQLGCHECQS--TSCASGKCQFSQSYSEGSSWHAYQVIDRFYTGVEVFAEIPA--ANADLAIDFLFGCQSSETGLFRTQLADGIMGMSMSHFSLVDALHKAGAVGHNNFAMCFNEEGGVMSLGG 239
BLAST of jgi.p|Trimin1|156039 vs. uniprot
Match: F0YC49_AURAN (Peptidase A1 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC49_AURAN) HSP 1 Score: 184 bits (466), Expect = 3.370e-56 Identity = 91/179 (50.84%), Postives = 112/179 (62.57%), Query Frame = 1
Query: 1 GAGTHVAYVYVGTPPQRVSVILDTGSSNTAFPCTGCQGCGQHEDPYWDRSASSTAQVSSCQQCVGDYTCTAAERCVFSQYYAEGSGWTAYQVEDTFYVGVPVQQGTAADKKHDDVSIDFSFGCVQSQTGLFVTQPEDGIMGMAMSDATLVPQLAKKGLIPHETFSLCFSYDGGYMVLGG 537
G GTH A+VYVGTPPQRVSVI+DTGS +TAFPC+GC+ CG+H DPY+D SST + C CV C + C SQ Y EGS W A Q++D +YVG A+ ++ F FGC +TGLF TQ DGIMGM+M TLVP + + H +FSLCF + GG M LGG
Sbjct: 2 GIGTHYAHVYVGTPPQRVSVIVDTGSHHTAFPCSGCKSCGKHTDPYFDPDKSSTLRRLGCSDCVAAARCV-TKTCQVSQSYTEGSSWKAVQMKDAYYVGGTSLTEKASRDGSAWIATPFVFGCQTYETGLFRTQKADGIMGMSMHAQTLVPTMRSANALGHNSFSLCFMHGGGTMALGG 179
BLAST of jgi.p|Trimin1|156039 vs. uniprot
Match: A0A6H5LNK8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LNK8_9PHAE) HSP 1 Score: 193 bits (491), Expect = 7.340e-56 Identity = 97/185 (52.43%), Postives = 124/185 (67.03%), Query Frame = 1
Query: 1 GAGTHVAYVYVGTPPQRVSVILDTGSSNTAFPCTGCQGCGQHEDPYWDRSASSTAQVSSC---QQCVGDYTCTAAERCVFSQYYAEGSGWTAYQVEDTFYVGVPVQQGTAAD-KKHDD--VSIDFSFGCVQSQTGLFVTQPEDGIMGMAMSDATLVPQLAKKGLIPHETFSLCFSYDGGYMVLGG 537
G GTH AY+Y GTPPQR SVI++TGS +AFPC+ C+ CG H DPYWD S SSTA + +C ++C G Y C + ++CV ++ Y E S W A QV+D +VG + T +D +KHDD S+DF+FGC++S TGLF TQ DGIMG+ TL+ QLA G I FSLCFS GG MV+GG
Sbjct: 103 GYGTHFAYIYAGTPPQRASVIINTGSHFSAFPCSECKNCGNHTDPYWDPSQSSTAHIVTCDETERCHGAYRCQSDKKCVLTERYTERSSWRAKQVDDLLWVG----ELTLSDSQKHDDSAFSVDFTFGCIESLTGLFRTQLADGIMGLNADSRTLITQLATAGKISERKFSLCFSETGGTMVIGG 283
BLAST of jgi.p|Trimin1|156039 vs. uniprot
Match: A0A7R9U4S4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4S4_9STRA) HSP 1 Score: 176 bits (445), Expect = 4.640e-50 Identity = 92/188 (48.94%), Postives = 120/188 (63.83%), Query Frame = 1
Query: 1 GAGTHVAYVYVGTPPQRVSVILDTGSSNTAFPCTGCQGCGQHEDPYWDRSASSTAQVSSCQ----QCVGDYTCTAAE-----RCVFSQYYAEGSGWTAYQVEDTFYVGVPVQQGTAADKKHDDVSIDFSFGCVQSQTGLFVTQPEDGIMGMAMSDATLVPQLAKKGLIPHETFSLCFSYDGGYMVLGG 537
G GTH AY++VGTP QRVSVI+DTGS TAFPC GC GCG H DPY++ SS++ CQ CVG ++A+ +C+ SQ YAEGS W+A+QV D +VG + AA ++I ++FGC S+TGLF+TQ DGIMGM +S++ L QL +G + +FSLCF GG M LGG
Sbjct: 40 GYGTHFAYLWVGTPAQRVSVIVDTGSGITAFPCNGCNGCGSHTDPYFNADKSSSSHELQCQTQRQDCVGADGKSSAQSCSNGKCILSQSYAEGSRWSAHQVTDMVWVGGETKTEVAA----APLAIPYTFGCQTSETGLFITQLADGIMGMMISESNLASQLQIQGKLSSRSFSLCFVLGGGVMTLGG 223
BLAST of jgi.p|Trimin1|156039 vs. uniprot
Match: A0A8J2SW55_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SW55_9STRA) HSP 1 Score: 175 bits (444), Expect = 8.060e-50 Identity = 89/180 (49.44%), Postives = 113/180 (62.78%), Query Frame = 1
Query: 1 GAGTHVAYVYVGTPPQRVSVILDTGSSNTAFPCTGCQGCGQHEDPYWDRSASSTAQVSSCQQCVGDYTCTAAERCVFSQYYAEGSGWTAYQVEDTFYVGVPVQQGTAADKKHDD-VSIDFSFGCVQSQTGLFVTQPEDGIMGMAMSDATLVPQLAKKGLIPHETFSLCFSYDGGYMVLGG 537
G GTH A+VYVGTP QRVSVI+DTGS +TAFPC GC+ CG+H DPY++ S SST C +CV C A+ C SQ Y EGS W A Q++D +YVG +A + + ++ F FGC +TGLF TQ DGIMGM+M TLVP + + H +F++CF GG M LGG
Sbjct: 95 GIGTHYAHVYVGTPAQRVSVIVDTGSHHTAFPCAGCKSCGKHTDPYFEPSRSSTLVRLDCSKCVAAARCV-AKTCQVSQSYTEGSSWKAVQMKDNYYVGG--DDASAPPRAGEKWIATPFVFGCQTYETGLFRTQKADGIMGMSMHAQTLVPTMRSANKLGHNSFAMCFMQGGGTMALGG 271
BLAST of jgi.p|Trimin1|156039 vs. uniprot
Match: A0A7S2WCI1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCI1_9STRA) HSP 1 Score: 176 bits (447), Expect = 1.980e-49 Identity = 91/186 (48.92%), Postives = 114/186 (61.29%), Query Frame = 1
Query: 1 GAGTHVAYVYVGTPPQRVSVILDTGSSNTAFPCTGCQGCGQHEDPYWDRSASSTAQVSSCQQCVGDYTCTAAERCVFSQYYAEGSGWTAYQVEDTFYVGVPVQQGTAADKKHDDVS-------IDFSFGCVQSQTGLFVTQPEDGIMGMAMSDATLVPQLAKKGLIPHETFSLCFSYDGGYMVLGG 537
G GTH A++YVGTPPQRVSVI+DTGS TAFPC GC+ CG H DP++ S SST C C C +C F Q Y EGS W A+Q+ED ++G G+++D HD S + F FGC S+TGLF TQ DGIMG++ S TL+PQ+ LI +TF+LCF GG M +GG
Sbjct: 83 GIGTHYAFIYVGTPPQRVSVIMDTGSHLTAFPCEGCKTCGSHTDPHFKPSGSSTNSYLPCNACKAGARCVKG-KCEFGQSYTEGSSWKAHQMEDVLWLG-----GSSSDT-HDPASSIGHALAVRFMFGCQFSETGLFRTQRADGIMGLSSSPTTLIPQVKNANLIEAKTFALCFMKGGGMMTIGG 261 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156039 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6758 ID=mRNA_6758|Name=jgi.p|Trimin1|156039|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=537bp|location=Sequence derived from alignment at Contig_60:176797..178798- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGCGCAGGGACTCATGTCGCCTATGTCTACGTGGGAACACCTCCTCAGAGback to top protein sequence of jgi.p|Trimin1|156039 >Trimin1|156039|gw1.60.233.1 ID=Trimin1|156039|gw1.60.233.1|Name=jgi.p|Trimin1|156039|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=179bp GAGTHVAYVYVGTPPQRVSVILDTGSSNTAFPCTGCQGCGQHEDPYWDRSback to top mRNA from alignment at Contig_60:176797..178798- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6758 ID=mRNA_6758|Name=jgi.p|Trimin1|156039|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2002bp|location=Sequence derived from alignment at Contig_60:176797..178798- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_60:176797..178798- >mRNA_6758 ID=mRNA_6758|Name=jgi.p|Trimin1|156039|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=537bp|location=Sequence derived from alignment at Contig_60:176797..178798- (Tribonema minus UTEX_B_3156 )back to top |