mRNA_674 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156921
Unique NamemRNA_674
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|156921 vs. uniprot
Match: A0A835Z7E9_9STRA (FirrV-1-P2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7E9_9STRA)

HSP 1 Score: 272 bits (696), Expect = 1.190e-92
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1
Query:    1 MTELNKLTYESCKQFLALEEGDKVKIVKVYDGDTVTAAFIRNGIPVKFQCRLEGIDTPELHSSEPHEKALAVKARDALSALTLNKVVTVKSPSLEKYGRILCDLEVDGKSACDEMMALHDVCYAYDGGSKKQW 399
            MTELNKLTYESCKQFLALEEGDKVKIVKVYDGDTVTAAFIRNGIPVKFQCRLEGIDTPELHSSEPHEKALAVKARDALSALTLNKVVTVKSPSLEKYGRILCDLEVDGKSACDEMMALHDVCYAYDGGSKKQW
Sbjct:    1 MTELNKLTYESCKQFLALEEGDKVKIVKVYDGDTVTAAFIRNGIPVKFQCRLEGIDTPELHSSEPHEKALAVKARDALSALTLNKVVTVKSPSLEKYGRILCDLEVDGKSACDEMMALHDVCYAYDGGSKKQW 133          
BLAST of jgi.p|Trimin1|156921 vs. uniprot
Match: A0A835YYA9_9STRA (Putative nuclease n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYA9_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.920e-35
Identity = 63/134 (47.01%), Postives = 85/134 (63.43%), Query Frame = 1
Query:    4 TELNKLTYESCKQFLALEEGDKVKIVKVYDGDTVTAAFIRNGIPVKFQCRLEGIDTPELHSSEPHEKALAVKARDALSALTLNKVVTVKSPSLEKYGRILCDLEVDGKSAC--DEMMALHDVCYAYDGGSKKQW 399
            T  + +TY++C ++L   +GD  K+V+V DGDTV  A   NG   +  CRL GID  ELHS + HEKAL  KA+  L+A   NK+VT+ +  LEKYGR+L DL V+G +      M+ + DVC+AYDGG K  W
Sbjct:   16 TTWDNVTYDTCDKYLPAHDGDVAKVVRVIDGDTVHLALKSNGTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGTNVTLSQVMLKVPDVCHAYDGGKKSPW 149          
BLAST of jgi.p|Trimin1|156921 vs. uniprot
Match: A0A6C0HBW5_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HBW5_9ZZZZ)

HSP 1 Score: 105 bits (262), Expect = 2.770e-26
Identity = 63/135 (46.67%), Postives = 83/135 (61.48%), Query Frame = 1
Query:    1 MTELNKLTYESCKQFLALEEGDKVKIVKVYDGDTVT-AAFIRN--GIPVKFQCRLEGIDTPELHSSEPHEKALAVKARDALSALTLNKVVTVKSPSLEKYGRILCDLEVDGKSACDEMMALHDVCYAYDGGSKKQ 396
            M  L+K+TYE+   F+      KV  VKVYDGDT T AA + N  G   +F  RL GIDTPE+      EK LA +ARDALSA+ +NK+V +K+ S EKYGR+L D+ VD     +E M  +     YDGG+K++
Sbjct:   22 MEYLDKVTYENTTPFIPPITAGKV--VKVYDGDTFTLAAKLPNTSGPVYRFTVRLNGIDTPEIKGKTATEKELAKRARDALSAIIMNKIVVLKNVSTEKYGRLLADVYVDETFCVNEYMITNKFAVKYDGGTKER 154          
BLAST of jgi.p|Trimin1|156921 vs. uniprot
Match: A0A6C0AUH4_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0AUH4_9ZZZZ)

HSP 1 Score: 103 bits (258), Expect = 6.610e-26
Identity = 50/109 (45.87%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   73 KIVKVYDGDTVTAAFIRNGIPVKFQCRLEGIDTPELHSSEPHEKALAVKARDALSALTLNKVVTVKSPSLEKYGRILCDLEVDGKSACDEMMALHDVCYAYDGGSKKQW 399
            K+V VYDGDTV   F  NG+  K+ CRL G+DTPE+ +S   EKA     RD L    LNKVV VK   L+KYGR+L  + +DG +  ++ +  ++  +AYDGG+K+ W
Sbjct:   26 KVVSVYDGDTVKTIFPLNGVLYKWNCRLTGVDTPEIRTSNKKEKAFGYVVRDLLREKILNKVVQVKCDDLDKYGRLLTVIYIDGVNV-NQWLIDNEYAFAYDGGTKRSW 133          
BLAST of jgi.p|Trimin1|156921 vs. uniprot
Match: A0A2E9UET5_9BACT (TNase-like domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A2E9UET5_9BACT)

HSP 1 Score: 97.1 bits (240), Expect = 5.420e-23
Identity = 47/109 (43.12%), Postives = 66/109 (60.55%), Query Frame = 1
Query:   73 KIVKVYDGDTVTAAFIRNGIPVKFQCRLEGIDTPELHSSEPHEKALAVKARDALSALTLNKVVTVKSPSLEKYGRILCDLEVDGKSACDEMMALHDVCYAYDGGSKKQW 399
            K+V VYDGDTV       G   +F CR+EG+DTPEL +    EKA+ +K RD L    L+K+V VK    +KYGR+L D+ +D  S   + +  +   ++YDGG+KK W
Sbjct:   42 KVVNVYDGDTVKIVMKMFGKFYRFNCRIEGVDTPELRTRNKKEKAMGIKVRDELRKKILDKMVQVKCGEFDKYGRLLVDIIIDNTSIT-KWLIENKFAFSYDGGTKKSW 149          
BLAST of jgi.p|Trimin1|156921 vs. uniprot
Match: A0A2E0E2I3_9RHOB (TNase-like domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A2E0E2I3_9RHOB)

HSP 1 Score: 95.5 bits (236), Expect = 1.710e-22
Identity = 47/111 (42.34%), Postives = 63/111 (56.76%), Query Frame = 1
Query:   67 KVKIVKVYDGDTVTAAFIRNGIPVKFQCRLEGIDTPELHSSEPHEKALAVKARDALSALTLNKVVTVKSPSLEKYGRILCDLEVDGKSACDEMMALHDVCYAYDGGSKKQW 399
            K K+V VYDGDT+   F  NG   K+ CRL GIDTPEL + + HEK LA+ A++ L  L LNK+V +     +KYGR+L       +    + +  H    +YDGG K  W
Sbjct:   36 KCKVVSVYDGDTMRVVFPLNGKMYKWNCRLLGIDTPELRTKDKHEKELAIIAKENLIKLVLNKIVYIHCGGWDKYGRLLVTPITKKEGNICDWLVKHKYAKSYDGGKKSSW 146          
BLAST of jgi.p|Trimin1|156921 vs. uniprot
Match: A0A6C0IQQ1_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0IQQ1_9ZZZZ)

HSP 1 Score: 95.5 bits (236), Expect = 2.590e-22
Identity = 51/124 (41.13%), Postives = 68/124 (54.84%), Query Frame = 1
Query:   37 KQFLALEEGDKVKIVKVYDGDTVTAAFIRNGIPVKFQCRLEGIDTPELHSSEPHEKALAVKARDALSALTLNKVVTVKSPSLEKYGRILCDLEVDG---KSACDEMMALHDVCYAYDGGSKKQW 399
            K+F    E    K+V VYDGDTV   F       KF CR+ G+DTPE+ + +  EK   +  RD L    LNKVVT+K    +KYGR+L D++  G   +    E +   D  +AYDGG+KK W
Sbjct:   30 KEFSFEGETKIAKVVSVYDGDTVKVVFPVLRKLFKFNCRISGVDTPEIRTRDKVEKEHGLFVRDQLRKKILNKVVTIKCGDFDKYGRLLIDIKERGALTEETVSEWLINKDYAFAYDGGTKKSW 153          
BLAST of jgi.p|Trimin1|156921 vs. uniprot
Match: A0A6C0B9E1_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0B9E1_9ZZZZ)

HSP 1 Score: 95.1 bits (235), Expect = 2.620e-22
Identity = 55/131 (41.98%), Postives = 81/131 (61.83%), Query Frame = 1
Query:   10 LNKLTYESCKQF-LALEEGDKVKIVKVYDGDTVTAAFIRNGIP---VKFQCRLEGIDTPELHSSEPHEKALAVKARDALSALTLNKVVTVKSPSLEKYGRILCDLEVDGKSACDEMMALHDVCYAYDGGSK 390
            L  + Y+  ++F L ++ G   K+VKVYDGDT+T A    GI     +F  R+ GID+PEL     +EK LA ++RDALS + + K+V +K+ S EKYGRIL D+ +   + CD M+ ++     YDGG+K
Sbjct:   17 LANIEYKDTEKFVLPIQSG---KVVKVYDGDTITIASKFPGINGRIYRFSVRMNGIDSPELKGGTENEKELAKRSRDALSNIIMGKIVDLKNVSTEKYGRILADVYLGDLNICDWML-INKYAVKYDGGTK 143          
BLAST of jgi.p|Trimin1|156921 vs. uniprot
Match: A0A6C0DRT6_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DRT6_9ZZZZ)

HSP 1 Score: 94.4 bits (233), Expect = 5.380e-22
Identity = 56/130 (43.08%), Postives = 78/130 (60.00%), Query Frame = 1
Query:   16 KLTYESCKQFLALEEGDKVKIVKVYDGDTVTAAF-IRNGIPV--KFQCRLEGIDTPELHSSEPHEKALAVKARDALSALTLNKVVTVKSPSLEKYGRILCDLEVDGKSACDEMMALHDVCYAYDGGSKKQ 396
            K+ Y    +F+A     K K++KVYDGDT+T A  I   +P   +F  RL GIDTPE+     HEK LA+KARDAL+ L  +K V +K+   EKYGR+L D+ + G    ++ M  +     YDGG+KK+
Sbjct:   21 KIEYNDTIEFVA--PITKGKVIKVYDGDTITVASRITPDLPTLYRFHIRLNGIDTPEIKGGSFHEKELAIKARDALADLIFDKTVYLKNNKTEKYGRVLSDVYL-GDLHVNQWMLDNKYAVKYDGGTKKR 147          
BLAST of jgi.p|Trimin1|156921 vs. uniprot
Match: A0A6C0CMD0_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CMD0_9ZZZZ)

HSP 1 Score: 90.5 bits (223), Expect = 1.550e-20
Identity = 47/116 (40.52%), Postives = 66/116 (56.90%), Query Frame = 1
Query:   58 EGDKVK--IVKVYDGDTVTAAFIRNGIPVKFQCRLEGIDTPELHSSEPHEKALAVKARDALSALTLNKVVTVKSPSLEKYGRILCDLEVDGKSACDEMMALHDVCYAYDGGSKKQW 399
            +G+K+K  +V VYDGDT+   F  N I  K+ CRL GIDTPEL +   HEK LA  A++ L  L LN V+ ++    +KYGR+L       +    + M  +    +YDGG+K  W
Sbjct:   32 KGEKIKCKVVSVYDGDTMKVVFPLNNIMYKWNCRLLGIDTPELRTKNTHEKELAKIAKENLIKLVLNNVIYIQCGGWDKYGRLLVTPFTSKEGNICDWMIKNKYAKSYDGGTKASW 147          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156921 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7E9_9STRA1.190e-92100.00FirrV-1-P2 n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A835YYA9_9STRA1.920e-3547.01Putative nuclease n=2 Tax=Tribonema minus TaxID=30... [more]
A0A6C0HBW5_9ZZZZ2.770e-2646.67TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0AUH4_9ZZZZ6.610e-2645.87TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A2E9UET5_9BACT5.420e-2343.12TNase-like domain-containing protein n=2 Tax=root ... [more]
A0A2E0E2I3_9RHOB1.710e-2242.34TNase-like domain-containing protein n=2 Tax=root ... [more]
A0A6C0IQQ1_9ZZZZ2.590e-2241.13TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0B9E1_9ZZZZ2.620e-2241.98TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0DRT6_9ZZZZ5.380e-2243.08TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0CMD0_9ZZZZ1.550e-2040.52TNase-like domain-containing protein n=1 Tax=viral... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1112751..1113152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156921|e_gw1.2.281.1
Descriptionnuclease
COG categoryL
Max annot lvl213481|Bdellovibrionales
EggNOG OGsCOG1525@1|root,COG1525@2|Bacteria,1NM4H@1224|Proteobacteria,42ZX0@68525|delta/epsilon subdivisions,2MU1J@213481|Bdellovibrionales,2WVCT@28221|Deltaproteobacteria
Evalue1.73e-12
Seed ortholog264462.Bd1431
Hectar predicted targeting categoryother localisation
TranscriptId157243
TrackFilteredModels1
ProteinId156921
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156921gene_674Tribonema minus UTEX_B_3156 geneContig_2 1112751..1113152 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_674_1exon_674_1Tribonema minus UTEX_B_3156 exonContig_2 1112751..1113152 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_674CDS_674Tribonema minus UTEX_B_3156 CDSContig_2 1112751..1113152 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156921Trimin1|156921|e_gw1.2.281.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1112751..1113152 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_674 ID=mRNA_674|Name=jgi.p|Trimin1|156921|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=402bp|location=Sequence derived from alignment at Contig_2:1112751..1113152- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGAACTAAATAAATTGACGTACGAGTCGTGTAAGCAGTTCTTGGC
ACTAGAGGAAGGCGACAAAGTTAAAATAGTGAAAGTTTATGACGGCGACA
CAGTGACGGCAGCATTCATCAGAAATGGCATCCCTGTCAAATTTCAGTGT
AGACTTGAGGGTATAGATACACCTGAGCTTCACAGTAGCGAACCTCATGA
GAAAGCGTTAGCCGTCAAGGCGAGGGACGCACTCTCTGCTTTGACATTGA
ACAAGGTAGTCACCGTCAAGTCACCCTCCCTCGAGAAGTATGGCCGCATA
CTCTGCGACTTGGAGGTGGATGGAAAGAGCGCCTGTGATGAAATGATGGC
ACTGCATGATGTGTGTTACGCTTACGATGGGGGGTCAAAGAAGCAGTGGT
GA
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protein sequence of jgi.p|Trimin1|156921

>Trimin1|156921|e_gw1.2.281.1 ID=Trimin1|156921|e_gw1.2.281.1|Name=jgi.p|Trimin1|156921|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=134bp
MTELNKLTYESCKQFLALEEGDKVKIVKVYDGDTVTAAFIRNGIPVKFQC
RLEGIDTPELHSSEPHEKALAVKARDALSALTLNKVVTVKSPSLEKYGRI
LCDLEVDGKSACDEMMALHDVCYAYDGGSKKQW*
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mRNA from alignment at Contig_2:1112751..1113152-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_674 ID=mRNA_674|Name=jgi.p|Trimin1|156921|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=402bp|location=Sequence derived from alignment at Contig_2:1112751..1113152- (Tribonema minus UTEX_B_3156 )
ATGACCGAACTAAATAAATTGACGTACGAGTCGTGTAAGCAGTTCTTGGC ACTAGAGGAAGGCGACAAAGTTAAAATAGTGAAAGTTTATGACGGCGACA CAGTGACGGCAGCATTCATCAGAAATGGCATCCCTGTCAAATTTCAGTGT AGACTTGAGGGTATAGATACACCTGAGCTTCACAGTAGCGAACCTCATGA GAAAGCGTTAGCCGTCAAGGCGAGGGACGCACTCTCTGCTTTGACATTGA ACAAGGTAGTCACCGTCAAGTCACCCTCCCTCGAGAAGTATGGCCGCATA CTCTGCGACTTGGAGGTGGATGGAAAGAGCGCCTGTGATGAAATGATGGC ACTGCATGATGTGTGTTACGCTTACGATGGGGGGTCAAAGAAGCAGTGGT GA
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Coding sequence (CDS) from alignment at Contig_2:1112751..1113152-

>mRNA_674 ID=mRNA_674|Name=jgi.p|Trimin1|156921|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=402bp|location=Sequence derived from alignment at Contig_2:1112751..1113152- (Tribonema minus UTEX_B_3156 )
ATGACCGAACTAAATAAATTGACGTACGAGTCGTGTAAGCAGTTCTTGGC
ACTAGAGGAAGGCGACAAAGTTAAAATAGTGAAAGTTTATGACGGCGACA
CAGTGACGGCAGCATTCATCAGAAATGGCATCCCTGTCAAATTTCAGTGT
AGACTTGAGGGTATAGATACACCTGAGCTTCACAGTAGCGAACCTCATGA
GAAAGCGTTAGCCGTCAAGGCGAGGGACGCACTCTCTGCTTTGACATTGA
ACAAGGTAGTCACCGTCAAGTCACCCTCCCTCGAGAAGTATGGCCGCATA
CTCTGCGACTTGGAGGTGGATGGAAAGAGCGCCTGTGATGAAATGATGGC
ACTGCATGATGTGTGTTACGCTTACGATGGGGGGTCAAAGAAGCAGTGGT
GA
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