mRNA_6711 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|132455
Unique Name	mRNA_6711
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|132455 vs. uniprot
Match: A0A836CFC7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFC7_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.200e-34
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1

Query:    1 MREATASVGALQWALANGFPTTPYARSQMIAWAARCGSVEVLRWLRAAGHPWGAFACSAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXECCARFAEEGAVRAWMLXXXXXXXXXXXSYTTAAAARRGHLEVL 699
            MREATASVGALQWALANGFPTTPYARSQMIAWAARCGSVEVLRWLRAAGHPWGAFACSAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXECCARFAEEGAVRAWMLXXXXXXXXXXXSYTTAAAARRGHLEVL
Sbjct:    1 MREATASVGALQWALANGFPTTPYARSQMIAWAARCGSVEVLRWLRAAGHPWGAFACSAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXECCARFAEEGAVRAWMLXXXXXXXXXXXSYTTAAAARRGHLEVL 233

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|132455 vs. uniprot

BLAST of jgi.p|Trimin1|132455 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CFC7_9STRA	1.200e-34	100.00	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_25	contig	Contig_25:1025412..1029475 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|132455\|gw1.25.18.1
Hectar predicted targeting category	signal peptide
TranscriptId	132777
Track	FilteredModels1
ProteinId	132455

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|132455	gene_6711	Tribonema minus UTEX_B_3156	gene	Contig_25 1025412..1029475 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_6711_1	exon_6711_1	Tribonema minus UTEX_B_3156	exon	Contig_25 1025412..1026023 +
exon_6711_2	exon_6711_2	Tribonema minus UTEX_B_3156	exon	Contig_25 1028954..1029475 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_6711	CDS_6711	Tribonema minus UTEX_B_3156	CDS	Contig_25 1025412..1026023 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|132455	Trimin1\|132455\|gw1.25.18.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_25 1025412..1029475 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_25:1025412..1029475+
coding sequence from alignment at Contig_25:1025412..1029475+

spliced messenger RNA

>mRNA_6711 ID=mRNA_6711|Name=jgi.p|Trimin1|132455|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1134bp|location=Sequence derived from alignment at Contig_25:1025412..1029475+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGAAGCCACCGCCAGCGTGGGCGCGCTGCAGTGGGCGCTCGCCAA
CGGCTTCCCCACGACCCCCTACGCGCGCTCCCAGATGATCGCGTGGGCGG
CGAGGTGCGGCAGCGTGGAAGTGCTGCGGTGGCTGCGCGCCGCCGGCCAC
CCCTGGGGCGCCTTCGCGTGCAGCGCCGCCGCCGCCGCGGGCCGCCTCGC
CGCGCTGCAGTGGCTGCGCGCACGCGGCTGCCCGTGGGACGCGTTCACGT
GCGGCGCCGCCGCCGAGGGCGGGCACCTCGACTGCCTGCGCTGGGCGCAC
GCGCACGGCGCCGCGTGCGACAGGTGGACGTGCGCCGCCGCCGCGCAGGG
CGGCCAGCTGCGCGTGCTGGAGTGGCTGCGGGCGAGCGGCTGCCCCTGGG
ACGAGTGGGCGTGCCGCTTCGCCGCGGAGCGCGGCCACGTGGCGGTGCTC
GCGTGGCTGCGCGCGCGCGGCTGCCCGTGGGGCGAGGCCACGTGCCTCAG
CGCCGTGCTGCACCGGCGCCTCGACGCGCTGCGGTGGCTGCGCGCACACG
GGTGCCCGTGGGACCGCGAGTGCTGCGCGCGCTTCGCGGAGGAGGGCGCC
GTGCGGGCGTGGATGCTGCAGTGGGCGCGCGCCCATAAGTTCCATTGGGA
CTCATATACAACCGCAGCAGCGGCGCGCAGGGGGCACCTGGAGGTGCTAC
AGTGGGCGCATACCAATGGCTGCCCCTTAGATCAGAGAGCGTGCGCTGAC
GCGGCGCGCGGAGGGCACCTGGAAGTGCTAAGTTGGGCGCGCAACGCCGG
ATGCGAGTGGGACAAGAGCACATGCAGTGGCGCCGCAGCAGGCGGCCACC
TGGGCACTTTACAATACGCGCGAAACCACAGCTGTCCGTGGAGCATCAAT
ACGTCATCCGAAGCGGCTTACCATGGCCATCTCCAGCTTCTACAATGGGC
GCACGCAAACGGCTGCCCCGTTGACAGCCGGGTGTGCTCAGAGGCCGCGA
GCGGAGGCTGCCTGCATGTGCTCCAGTGGCTGCAAGAAATCGGCTGTCCC
TGGGATGGATCCGCATGCACGGAAGCCATCATAGGAGGGCATCTGGACAT
CTTGCAGTGGCTGCGGGCACAAGGGTGCCCGTGG

protein sequence of jgi.p|Trimin1|132455

>Trimin1|132455|gw1.25.18.1 ID=Trimin1|132455|gw1.25.18.1|Name=jgi.p|Trimin1|132455|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=378bp
MREATASVGALQWALANGFPTTPYARSQMIAWAARCGSVEVLRWLRAAGH
PWGAFACSAAAAAGRLAALQWLRARGCPWDAFTCGAAAEGGHLDCLRWAH
AHGAACDRWTCAAAAQGGQLRVLEWLRASGCPWDEWACRFAAERGHVAVL
AWLRARGCPWGEATCLSAVLHRRLDALRWLRAHGCPWDRECCARFAEEGA
VRAWMLQWARAHKFHWDSYTTAAAARRGHLEVLQWAHTNGCPLDQRACAD
AARGGHLEVLSWARNAGCEWDKSTCSGAAAGGHLGTLQYARNHSCPWSIN
TSSEAAYHGHLQLLQWAHANGCPVDSRVCSEAASGGCLHVLQWLQEIGCP
WDGSACTEAIIGGHLDILQWLRAQGCPW

mRNA from alignment at Contig_25:1025412..1029475+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6711 ID=mRNA_6711|Name=jgi.p|Trimin1|132455|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4064bp|location=Sequence derived from alignment at Contig_25:1025412..1029475+ (Tribonema minus UTEX_B_3156 )
ATGCGCGAAGCCACCGCCAGCGTGGGCGCGCTGCAGTGGGCGCTCGCCAA
CGGCTTCCCCACGACCCCCTACGCGCGCTCCCAGATGATCGCGTGGGCGG
CGAGGTGCGGCAGCGTGGAAGTGCTGCGGTGGCTGCGCGCCGCCGGCCAC
CCCTGGGGCGCCTTCGCGTGCAGCGCCGCCGCCGCCGCGGGCCGCCTCGC
CGCGCTGCAGTGGCTGCGCGCACGCGGCTGCCCGTGGGACGCGTTCACGT
GCGGCGCCGCCGCCGAGGGCGGGCACCTCGACTGCCTGCGCTGGGCGCAC
GCGCACGGCGCCGCGTGCGACAGGTGGACGTGCGCCGCCGCCGCGCAGGG
CGGCCAGCTGCGCGTGCTGGAGTGGCTGCGGGCGAGCGGCTGCCCCTGGG
ACGAGTGGGCGTGCCGCTTCGCCGCGGAGCGCGGCCACGTGGCGGTGCTC
GCGTGGCTGCGCGCGCGCGGCTGCCCGTGGGGCGAGGCCACGTGCCTCAG
CGCCGTGCTGCACCGGCGCCTCGACGCGCTGCGGTGGCTGCGCGCACACG
GGTGCCCGTGGGACCGCGAGTGCTGCGCGCGCTTCGCGGAGGAGGGCGCC
GTGCGGGCGTGGGTGCTGGCGCACGCTTGAGTGAGTAGAGTGAGTGAGTG
AGTCATGGGTGGTCGAGGGTCGGATCGGGGAGAGCGCACATGTGTGTGTG
GACGTCTGGGTGCGCGTGTAGATTAGATGTGCGCCGGCGCTGGAGCGCAT
GTGTGTGTAATAGTGTGACGACGTGAGGCTGCATACGTGCGCACAGAGCT
CGTGCTGTGGAACAGTGCGACAACTTGAGGCTGCATACGTGCGCACAGCA
TACATAGAACAGGAAGCTGTCAAGTGTTTGGCCATGTTGTGTACAATGAC
ACAAGTACAAGTAGGGCAGGGGCAGGCTGCAGATGTCCTTGTTGTTCAGT
AGCGCCGCCATGCAGGAAGGCTGGGATGTGACCAGGTGCACTTCGCGTCG
AGTGAACGGGAAGTGCACTGCACTTCATGATCTGTGCAGCGACTGCAGCT
GCTGCCGTAGCTGTCGCACTTGCAAGTGCGCGTACATATGTGTAGCGTAC
ACCAATGAAAAATATTGTGTACCTGTAATGTGAAAAATGAACAGTGCATG
TTGCACGGGTATTCTCTGTGTCTGCATGAGCAATATTTGTGTTTTTCTGT
TACTTTGGCACACTCACCTGCTAGTGGTAGGGTGTCGGGCTCAGTCATGT
ATACAGTATACATATCGAAGTGCAGCAATGAAAGGCTTCGCTGAAAGCCA
GTGCTCGATTAATGTGGTACAGCATGCCAATGCAGTGCACCACTGCAGCA
TGACCTCTATTTGACGAGGCATTTGTGCAGAACCTTGAGGACTTGCCTTG
TCAACCTACTCTGCGCTTGCGTTGCTTCTTTCAACGGGTCTGAAGCACCT
CTCTTTCCCTGTAACTTCAGACTTGAACTTTTCCTGCGTGAACTCTGATC
TGTGCGCAAGATATTTTCGAAGAGTACGATGGTGGCAACAAGAAAACGGG
CCCGCGTGCTGGCGCTTTAATCATCATGTGACGCGAAAGCGGAAGCGAGC
CAGCAGCAGCGTGGTGAGTGGATCTATGAATCAATGCACCAAAATGAATC
CGATCATCGACATCGACGCCCCGTAGTCTGCCACGACAATGCGCCTCGTA
AGGCACAAGCTAGTCCCACTGGGTATGTACGAAGAATGTGGGGTGGCTTG
GGGTCCACAGTTTAGCCCCCCCCCTGCCCTGCCAGGTCGCTGCCATATAG
TGGCACGCAGGCTCGATACTGACAGTCTACGTCTTTGAGACTCTTCCAAT
CGAACGTAGGATACATTCGAGGCCTTTCGTCGAACGCGACTATCTATATA
TATATATCTCTCTTTTTCCTGCCGAAAGTTCGTATCCATCAGAGTCCATT
GATAAACATTGCATGAACTGGTTACAGGTCGAGACACCTGTGCCAGCCTG
AAGTGAGCAGCGCATGGACGCAAACAGAGCTCTGCAGCAGAGCGTGCAAC
TTTACAAAAGTCACTTCACATGTCACTGCGCCAAGTAATGCGTGATGGCC
TGCAACAACACAGGTACGACGCACAACAGGGTGGATCAGAACAGGATGAT
ATGTAGCGTCTTCAGGTTAGGAGCAACTTTGCAGCCTTTGAAGTGTGACC
ACAGATCAAGCTTGAGGCACTTTGCACCGTCGACAAAAGACACGGAACAA
ACACATAATATGACAACGCCATTGTACCAATGGAATATTGGGTCATGGAA
ATGTGCGCCTTTGATTTCTCCACATAAGGTCGTGCGGCCCTGAGACTCGT
GCTGGGCAGAGCGTCACATAAACTCATCAATTGCCACGCTTCCCTGGCAA
TTCATTTATAACTTTCACCCATAACTTCCACGCTGTACACAATGCATTGA
TGTACAGCAGCTCCTGCACCAGTGCAATGTGCTCCAGAAGACCATGCAGC
ATTCCATCAACAGTCGCATATGCTATAACAATTATCGCCACCAAGCCAGA
GCCCGGATTGTGCAGTACGCGTCCACCCGCTGACAGCCCATAAACAGTGC
TTGAAGTTCGCTGCTGCTGCGTCTTGACCCAGCAGCAGCGGCACTGAGCC
ACTGTTGTGGCCAATGCGTTAAGCTCTCGCTTTGCATCGCGCAGCGGAGT
GACAGTTGCCCTCTGTGATTTTGGGGGTTTTGCCACTTCACTTGCGTCGT
TTTTCTTCTGCTGCCTGTATTATTCACGGCCACCGCCACCTCCAAAGGAT
TGCCAGCTATTGCGCTCCCCGAGTCATATCACGCGGTGTGTCTGACTGTG
CTGTGGTTCGTGTGATCATTACGAAACTCACCCAATAACTTCAAGTGTTG
TACTCAACTTTGTGAAGAGTTTACATGGTAAGTTCAACTATACATCCCTA
ATGCAAACATGATACAGAGGTGAACCCGCGCACGCGCCGGATGACACTGT
CTAAGAAAAACTCATTGCCTGAAGGCCCCTCGATCGCCAATGATATGCTG
CACACACAAACTGTAGAAGCGTCAACGACACTGCGCCTCCTGATTAGAGG
TTTGTAGCATGTCGCCTGCTTGTCTCCTGCAGCGGTGTGAGCATCAGCAG
CAATGTCATTGACTTTTACGCACCTCCATTCGCTTGTTATGTCCTCAGAT
ATGTGGATGAAGGTCTTCGAGTTCGTGCCATGTGGGCACTACCTTCAGCT
TTCATCAGTGAGCACTGCGTGGCGCGCACTTTATGCCAGTAGCATGCAGT
GCAGAGGACAGGCCCAGTTGCACAAACTAACAGCTGCACAAGCCATGGTC
GCCTCCGTGCCTCTGCTTCAATGGGCTTTTTCAAATGGATGCAAGGCGCA
CATATCACTGCAGTCGTATGCCGCCAGGTGCGGTTCTTTAGAAGTGTTGC
AATTTGTGTACGCGAAAGCCAAACATGATGGCGTCGTTCCATCTCAAAAC
CATTCCACATGCACGGCCGCGGCCGCGCACGGGGATCTGGAGATGCTGCA
GTGGGCGCGCGCCCATAAGTTCCATTGGGACTCATATACAACCGCAGCAG
CGGCGCGCAGGGGGCACCTGGAGGTGCTACAGTGGGCGCATACCAATGGC
TGCCCCTTAGATCAGAGAGCGTGCGCTGACGCGGCGCGCGGAGGGCACCT
GGAAGTGCTAAGTTGGGCGCGCAACGCCGGATGCGAGTGGGACAAGAGCA
CATGCAGTGGCGCCGCAGCAGGCGGCCACCTGGGCACTTTACAATACGCG
CGAAACCACAGCTGTCCGTGGAGCATCAATACGTCATCCGAAGCGGCTTA
CCATGGCCATCTCCAGCTTCTACAATGGGCGCACGCAAACGGCTGCCCCG
TTGACAGCCGGGTGTGCTCAGAGGCCGCGAGCGGAGGCTGCCTGCATGTG
CTCCAGTGGCTGCAAGAAATCGGCTGTCCCTGGGATGGATCCGCATGCAC
GGAAGCCATCATAGGAGGGCATCTGGACATCTTGCAGTGGCTGCGGGCAC
AAGGGTGCCCGTGG

Coding sequence (CDS) from alignment at Contig_25:1025412..1029475+

>mRNA_6711 ID=mRNA_6711|Name=jgi.p|Trimin1|132455|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1134bp|location=Sequence derived from alignment at Contig_25:1025412..1029475+ (Tribonema minus UTEX_B_3156 )
ATGCGCGAAGCCACCGCCAGCGTGGGCGCGCTGCAGTGGGCGCTCGCCAA
CGGCTTCCCCACGACCCCCTACGCGCGCTCCCAGATGATCGCGTGGGCGG
CGAGGTGCGGCAGCGTGGAAGTGCTGCGGTGGCTGCGCGCCGCCGGCCAC
CCCTGGGGCGCCTTCGCGTGCAGCGCCGCCGCCGCCGCGGGCCGCCTCGC
CGCGCTGCAGTGGCTGCGCGCACGCGGCTGCCCGTGGGACGCGTTCACGT
GCGGCGCCGCCGCCGAGGGCGGGCACCTCGACTGCCTGCGCTGGGCGCAC
GCGCACGGCGCCGCGTGCGACAGGTGGACGTGCGCCGCCGCCGCGCAGGG
CGGCCAGCTGCGCGTGCTGGAGTGGCTGCGGGCGAGCGGCTGCCCCTGGG
ACGAGTGGGCGTGCCGCTTCGCCGCGGAGCGCGGCCACGTGGCGGTGCTC
GCGTGGCTGCGCGCGCGCGGCTGCCCGTGGGGCGAGGCCACGTGCCTCAG
CGCCGTGCTGCACCGGCGCCTCGACGCGCTGCGGTGGCTGCGCGCACACG
GGTGCCCGTGGGACCGCGAGTGCTGCGCGCGCTTCGCGGAGGAGGGCGCC
GTGCGGGCGTGGATGCTGCAGTGGGCGCGCGCCCATAAGTTCCATTGGGA
CTCATATACAACCGCAGCAGCGGCGCGCAGGGGGCACCTGGAGGTGCTAC
AGTGGGCGCATACCAATGGCTGCCCCTTAGATCAGAGAGCGTGCGCTGAC
GCGGCGCGCGGAGGGCACCTGGAAGTGCTAAGTTGGGCGCGCAACGCCGG
ATGCGAGTGGGACAAGAGCACATGCAGTGGCGCCGCAGCAGGCGGCCACC
TGGGCACTTTACAATACGCGCGAAACCACAGCTGTCCGTGGAGCATCAAT
ACGTCATCCGAAGCGGCTTACCATGGCCATCTCCAGCTTCTACAATGGGC
GCACGCAAACGGCTGCCCCGTTGACAGCCGGGTGTGCTCAGAGGCCGCGA
GCGGAGGCTGCCTGCATGTGCTCCAGTGGCTGCAAGAAATCGGCTGTCCC
TGGGATGGATCCGCATGCACGGAAGCCATCATAGGAGGGCATCTGGACAT
CTTGCAGTGGCTGCGGGCACAAGGGTGCCCGTGG