mRNA_6703 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|139128
Unique NamemRNA_6703
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|139128 vs. uniprot
Match: A0A835Z8V6_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V6_9STRA)

HSP 1 Score: 118 bits (295), Expect = 6.750e-34
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 RRLRLRPHAAKPNRYVLHSVLVHNGDVSSGHYFAYIRPSGDATGGQWAKFDDETVT 168
            RRLRLRPHAAKPNRYVLHSVLVHNGDVSSGHYFAYIRPSGDATGGQWAKFDDETVT
Sbjct:    1 RRLRLRPHAAKPNRYVLHSVLVHNGDVSSGHYFAYIRPSGDATGGQWAKFDDETVT 56
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BLAST of jgi.p|Trimin1|139128 vs. uniprot
Match: D8LL31_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL31_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 4.710e-16
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   31 KPNRYVLHSVLVHNGDVSSGHYFAYIRPSGDATGGQWAKFDDETVT 168
            +PNRY+LHSVLVH+GDV  GHYFAYIRP G   GGQW KF+DE VT
Sbjct:  606 RPNRYILHSVLVHSGDVHGGHYFAYIRPDGRVKGGQWCKFNDEVVT 651
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BLAST of jgi.p|Trimin1|139128 vs. uniprot
Match: A0A6H5KU31_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU31_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 4.720e-16
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   31 KPNRYVLHSVLVHNGDVSSGHYFAYIRPSGDATGGQWAKFDDETVT 168
            +PNRY+LHSVLVH+GDV  GHYFAYIRP G   GGQW KF+DE VT
Sbjct:  650 RPNRYILHSVLVHSGDVHGGHYFAYIRPDGRVKGGQWCKFNDEVVT 695
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BLAST of jgi.p|Trimin1|139128 vs. uniprot
Match: A0A7S2DI30_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2DI30_9DINO)

HSP 1 Score: 65.9 bits (159), Expect = 3.530e-11
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 RRLRLRPHAAKPNRYVLHSVLVHNGDVSSGHYFAYIRPSGDATGGQWAKFDDETVT 168
            RRL L P A     Y+LH+V+VH+GDV+SGHY+A+IRP+ +   G W KFDDETVT
Sbjct:  321 RRLDLSPFAPGAGTYLLHAVVVHSGDVNSGHYYAHIRPNLET--GLWFKFDDETVT 374
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BLAST of jgi.p|Trimin1|139128 vs. uniprot
Match: A0A068RR40_9FUNG (Ubiquitinyl hydrolase 1 n=1 Tax=Lichtheimia corymbifera JMRC:FSU:9682 TaxID=1263082 RepID=A0A068RR40_9FUNG)

HSP 1 Score: 65.9 bits (159), Expect = 3.570e-11
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   28 AKPNRYVLHSVLVHNGDVSSGHYFAYIRPSGDATGGQWAKFDDETVT 168
            + PN Y+LH VLVH+G+VSSGHYFA+I+P+ D T   W KFDDE VT
Sbjct:  111 SSPNTYLLHGVLVHSGNVSSGHYFAFIKPTKDET---WLKFDDERVT 154
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BLAST of jgi.p|Trimin1|139128 vs. uniprot
Match: A0A1X6PD41_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PD41_PORUM)

HSP 1 Score: 65.1 bits (157), Expect = 6.700e-11
Identity = 31/42 (73.81%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   43 YVLHSVLVHNGDVSSGHYFAYIRPSGDATGGQWAKFDDETVT 168
            YVLH+VLVH GDV +GHY AYIRP  D  GG W KFDDETVT
Sbjct:  515 YVLHTVLVHIGDVDTGHYCAYIRP--DGPGGSWLKFDDETVT 554
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BLAST of jgi.p|Trimin1|139128 vs. uniprot
Match: A0A1X2HQ63_SYNRA (Ubiquitinyl hydrolase 1 n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HQ63_SYNRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.710e-10
Identity = 26/46 (56.52%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   28 AKPNRYVLHSVLVHNGDVSSGHYFAYIRPSGDATGGQWAKFDDETV 165
            ++P++Y+LH VLVH+GD+S GHYFA+++PS D   G+W KFDD+ V
Sbjct:  443 SQPHKYILHGVLVHSGDLSGGHYFAFVKPSKD---GKWLKFDDDRV 485
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BLAST of jgi.p|Trimin1|139128 vs. uniprot
Match: A0A812X999_9DINO (Ubiquitinyl hydrolase 1 n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A812X999_9DINO)

HSP 1 Score: 63.9 bits (154), Expect = 1.710e-10
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 RRLRLRPHAAKPNRYVLHSVLVHNGDVSSGHYFAYIRPSGDATGGQWAKFDDETVT 168
            RRL L   A     Y+LHSV+VH+GDV+SGHY+AYIRP+ D    +W KFDD+ VT
Sbjct:  470 RRLDLSQFAPGAGHYLLHSVVVHSGDVNSGHYYAYIRPNLDE---RWVKFDDDNVT 522
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BLAST of jgi.p|Trimin1|139128 vs. uniprot
Match: A0A1Q9C845_SYMMI (Ubiquitinyl hydrolase 1 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9C845_SYMMI)

HSP 1 Score: 63.9 bits (154), Expect = 1.710e-10
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 RRLRLRPHAAKPNRYVLHSVLVHNGDVSSGHYFAYIRPSGDATGGQWAKFDDETVT 168
            RRL L   A     Y+LHSV+VH+GDV+SGHY+AYIRP+ D    +W KFDD+ VT
Sbjct:  539 RRLDLSQFAPGAGHYLLHSVVVHSGDVNSGHYYAYIRPNLDE---RWVKFDDDNVT 591
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BLAST of jgi.p|Trimin1|139128 vs. uniprot
Match: A0A813CVF4_9DINO (Ubiquitinyl hydrolase 1 n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A813CVF4_9DINO)

HSP 1 Score: 63.9 bits (154), Expect = 1.710e-10
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 RRLRLRPHAAKPNRYVLHSVLVHNGDVSSGHYFAYIRPSGDATGGQWAKFDDETVT 168
            RRL L   A     Y+LHSV+VH+GDV+SGHY+AYIRP+ D    +W KFDD+ VT
Sbjct:  679 RRLDLSQFAPGAGHYLLHSVVVHSGDVNSGHYYAYIRPNLDE---RWVKFDDDNVT 731
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|139128 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8V6_9STRA6.750e-34100.00USP domain-containing protein (Fragment) n=1 Tax=T... [more]
D8LL31_ECTSI4.710e-1673.91USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KU31_9PHAE4.720e-1673.91USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2DI30_9DINO3.530e-1158.93Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A068RR40_9FUNG3.570e-1163.83Ubiquitinyl hydrolase 1 n=1 Tax=Lichtheimia corymb... [more]
A0A1X6PD41_PORUM6.700e-1173.81Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1X2HQ63_SYNRA1.710e-1056.52Ubiquitinyl hydrolase 1 n=1 Tax=Syncephalastrum ra... [more]
A0A812X999_9DINO1.710e-1057.14Ubiquitinyl hydrolase 1 n=4 Tax=Symbiodinium TaxID... [more]
A0A1Q9C845_SYMMI1.710e-1057.14Ubiquitinyl hydrolase 1 n=1 Tax=Symbiodinium micro... [more]
A0A813CVF4_9DINO1.710e-1057.14Ubiquitinyl hydrolase 1 n=3 Tax=Symbiodinium TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_25contigContig_25:964615..964782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|139128|gw1.25.46.1
BRITEko00000,ko00001,ko01000,ko01002,ko04121
KEGG Pathwayko04068,ko05168,ko05169,ko05203,map04068,map05168,map05169,map05203
KEGG koko:K11838
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5077@1|root,KOG1863@2759|Eukaryota
Evalue7.73e-17
Seed ortholog2880.D8LL31
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId139450
TrackFilteredModels1
ProteinId139128
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|139128gene_6703Tribonema minus UTEX_B_3156 geneContig_25 964615..964782 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6703_1exon_6703_1Tribonema minus UTEX_B_3156 exonContig_25 964615..964782 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6703CDS_6703Tribonema minus UTEX_B_3156 CDSContig_25 964615..964782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|139128Trimin1|139128|gw1.25.46.1Tribonema minus UTEX_B_3156 polypeptideContig_25 964615..964782 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6703 ID=mRNA_6703|Name=jgi.p|Trimin1|139128|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=168bp|location=Sequence derived from alignment at Contig_25:964615..964782- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCCGCCTCCGCCTCCGCCCGCACGCAGCCAAGCCGAACCGCTACGTCCT
TCACAGTGTGCTGGTGCACAACGGCGACGTGTCATCGGGCCACTACTTTG
CATACATCCGGCCCAGCGGCGACGCCACCGGCGGGCAGTGGGCCAAGTTC
GACGACGAGACCGTAACG
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protein sequence of jgi.p|Trimin1|139128

>Trimin1|139128|gw1.25.46.1 ID=Trimin1|139128|gw1.25.46.1|Name=jgi.p|Trimin1|139128|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=56bp
RRLRLRPHAAKPNRYVLHSVLVHNGDVSSGHYFAYIRPSGDATGGQWAKF
DDETVT
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mRNA from alignment at Contig_25:964615..964782-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6703 ID=mRNA_6703|Name=jgi.p|Trimin1|139128|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=168bp|location=Sequence derived from alignment at Contig_25:964615..964782- (Tribonema minus UTEX_B_3156 )
CGCCGCCTCCGCCTCCGCCCGCACGCAGCCAAGCCGAACCGCTACGTCCT
TCACAGTGTGCTGGTGCACAACGGCGACGTGTCATCGGGCCACTACTTTG
CATACATCCGGCCCAGCGGCGACGCCACCGGCGGGCAGTGGGCCAAGTTC
GACGACGAGACCGTAACG
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Coding sequence (CDS) from alignment at Contig_25:964615..964782-

>mRNA_6703 ID=mRNA_6703|Name=jgi.p|Trimin1|139128|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=168bp|location=Sequence derived from alignment at Contig_25:964615..964782- (Tribonema minus UTEX_B_3156 )
CGCCGCCTCCGCCTCCGCCCGCACGCAGCCAAGCCGAACCGCTACGTCCT
TCACAGTGTGCTGGTGCACAACGGCGACGTGTCATCGGGCCACTACTTTG
CATACATCCGGCCCAGCGGCGACGCCACCGGCGGGCAGTGGGCCAAGTTC
GACGACGAGACCGTAACG
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