mRNA_67 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152434
Unique NamemRNA_67
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|152434 vs. uniprot
Match: A0A835YZI4_9STRA (CCHC-type domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZI4_9STRA)

HSP 1 Score: 248 bits (632), Expect = 1.720e-83
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1
Query:    1 VVYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 345
            VVYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC
Sbjct:    1 VVYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 115          
BLAST of jgi.p|Trimin1|152434 vs. uniprot
Match: A0A835YSD6_9STRA (GIY-YIG domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSD6_9STRA)

HSP 1 Score: 217 bits (552), Expect = 1.580e-70
Identity = 95/114 (83.33%), Postives = 107/114 (93.86%), Query Frame = 1
Query:    4 VYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 345
            VYTLKLRGGK+YVGFT NLPKRLEQHFTGTD AMWTK+YPMERV++IEYNGNKF E T  LMLMA+HG++NVRGG+++TARFTP+ER+AIEKQLWGATDACLKCGDPTHFA DC
Sbjct:    1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDC 114          
BLAST of jgi.p|Trimin1|152434 vs. uniprot
Match: A0A6C0HUW7_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HUW7_9ZZZZ)

HSP 1 Score: 101 bits (252), Expect = 7.470e-24
Identity = 51/114 (44.74%), Postives = 66/114 (57.89%), Query Frame = 1
Query:    4 VYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 345
            +Y L+L   KYYVG T N   RLEQHFT + G+ WTK Y   RV+ I  N + F E   TL  M++HG+NNVRGGS+   +        I++ L G+T+ C  CG   HFA  C
Sbjct:   33 IYILELTNNKYYVGKTNNPTFRLEQHFTNS-GSAWTKKYSPIRVIEIIPNCDDFDEDKYTLKYMSMHGVNNVRGGSFCQLKLDKSNTDTIQRMLDGSTNKCYICGQSNHFARQC 145          
BLAST of jgi.p|Trimin1|152434 vs. uniprot
Match: A0A3G5A8D2_9VIRU (GIY-YIG nuclease n=1 Tax=Hyperionvirus sp. TaxID=2487770 RepID=A0A3G5A8D2_9VIRU)

HSP 1 Score: 97.8 bits (242), Expect = 5.770e-23
Identity = 49/114 (42.98%), Postives = 66/114 (57.89%), Query Frame = 1
Query:    4 VYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 345
            +Y LKL  GKYYVG T    KR+E+H     G+ WT+ Y    V++I  N + F E   TL LM+  G+ NVRGGS+++     E+ ++I   L  A + C KCG   HFAADC
Sbjct:    3 IYLLKLEAGKYYVGRTNKEEKRIEEHIE-LFGSEWTRKYKYVEVMDIIKNADSFDEDKYTLKLMSEFGIENVRGGSFVSVTLNDEQIQSISLMLRNAENKCFKCGGIGHFAADC 115          
BLAST of jgi.p|Trimin1|152434 vs. uniprot
Match: A0A6C0JPV8_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JPV8_9ZZZZ)

HSP 1 Score: 96.7 bits (239), Expect = 8.470e-23
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 1
Query:    4 VYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 345
            +Y L+L+GG+YYVG T ++ +R +QH  G  G+ WTK Y    +     N + F E       M I+G+ NVRGGSY++ + T E+  A++ ++  ATD C +CG   HFA +C
Sbjct:    5 IYILRLQGGRYYVGKTDDVDRRYQQHMKGY-GSAWTKKYSPICIAKQIPNASPFDEDRYVKEYMDIYGIQNVRGGSYVSIKLTEEQENALKLEIRAATDKCTRCGRDGHFAKNC 117          
BLAST of jgi.p|Trimin1|152434 vs. uniprot
Match: A0A6C0K9G4_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0K9G4_9ZZZZ)

HSP 1 Score: 96.3 bits (238), Expect = 2.180e-22
Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = 1
Query:    4 VYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 345
            +Y LKL+ GKYYVG TT+L +R ++H  GT  A WTK Y    V     N + F E   T + M  HG+ NVRG +Y        +R  +++++  A DAC+KCG   HFA  C
Sbjct:    6 IYILKLQSGKYYVGKTTDLERRKQEHINGTASA-WTKKYKPVSVEKTIPNASAFDEDKWTKIYMEKHGVENVRGAAYSQMELDEAQRETLQREIRSAKDACMKCGRSGHFAKSC 118          
BLAST of jgi.p|Trimin1|152434 vs. uniprot
Match: A0A6C0DJP0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DJP0_9ZZZZ)

HSP 1 Score: 92.4 bits (228), Expect = 4.640e-21
Identity = 43/114 (37.72%), Postives = 64/114 (56.14%), Query Frame = 1
Query:    4 VYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 345
            +Y LKL+GGKYYVG ++++  R +QH  G  G+ WTK Y    +V      +   E   T   M  +G+ NVRGG+Y+T      +   ++K+LW A+D C +CG   H+A  C
Sbjct:    6 IYVLKLQGGKYYVGKSSDVIGRFQQHMNG-QGSSWTKKYKPMSLVESRDGVSPLMEDMITKEYMVKYGIENVRGGAYVTEELDEVQEYNLQKELWAASDCCTECGRKGHWAKTC 118          
BLAST of jgi.p|Trimin1|152434 vs. uniprot
Match: A0A6C0FCP6_9ZZZZ (CCHC-type domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0FCP6_9ZZZZ)

HSP 1 Score: 90.5 bits (223), Expect = 1.050e-20
Identity = 47/116 (40.52%), Postives = 63/116 (54.31%), Query Frame = 1
Query:    4 VYTLKLRGGKYYVGFTTNLPKRLEQHFT--GTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 345
            +Y L L   KYYVG T N   RL+ HF     +GA WT+ YP   V  I  N + F E   T M M  HG++NVRGGSY+       ++  +EK+++ A ++C  CG   HF A C
Sbjct:    4 IYILLLEQQKYYVGKTNNPIFRLKDHFHEGSKNGAAWTRKYPPLEVEKIIPNCDNFDEDKITKMYMKQHGIDNVRGGSYVKISLDEMQKLLLEKEIFTAENSCFHCGQKGHFIATC 119          
BLAST of jgi.p|Trimin1|152434 vs. uniprot
Match: A0A6C0ASW7_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0ASW7_9ZZZZ)

HSP 1 Score: 91.7 bits (226), Expect = 1.310e-20
Identity = 44/114 (38.60%), Postives = 65/114 (57.02%), Query Frame = 1
Query:    4 VYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 345
            +YTL+L GGKYY+G T N   RLE HF  ++G+ WTK Y   R++ ++ N + + E   T   M  +G+NNVRGGS+++ +        +++   G  D C  C    HFA DC
Sbjct:    4 IYTLQLEGGKYYIGKTNNPQFRLESHFN-SNGSEWTKLYKPIRILELKPNCDDYDEDKITRQYMDKYGINNVRGGSFVSIKLQKHTIDTLKQMRNGTNDKCFVCEKVGHFAKDC 116          
BLAST of jgi.p|Trimin1|152434 vs. uniprot
Match: A0A6C0JC79_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JC79_9ZZZZ)

HSP 1 Score: 90.1 bits (222), Expect = 4.000e-20
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 1
Query:    4 VYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 345
            +YT++L  GKYY+G T N   RL+ HF  ++G+ WTK Y   +V+ I  N + + E   T+  M  +G+NNVRGGS+++ +        ++K   GA + C  CG   HFA DC
Sbjct:    4 IYTIQLDKGKYYIGKTNNPQFRLKSHFN-SNGSEWTKIYKPLKVLEITPNCDDYDEDKITIQYMDKYGINNVRGGSFVSVKLDRSTIDTLKKMSNGANNKCFICGKGGHFAKDC 116          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152434 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZI4_9STRA1.720e-83100.00CCHC-type domain-containing protein (Fragment) n=2... [more]
A0A835YSD6_9STRA1.580e-7083.33GIY-YIG domain-containing protein (Fragment) n=1 T... [more]
A0A6C0HUW7_9ZZZZ7.470e-2444.74Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A3G5A8D2_9VIRU5.770e-2342.98GIY-YIG nuclease n=1 Tax=Hyperionvirus sp. TaxID=2... [more]
A0A6C0JPV8_9ZZZZ8.470e-2339.47Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0K9G4_9ZZZZ2.180e-2241.23Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0DJP0_9ZZZZ4.640e-2137.72Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0FCP6_9ZZZZ1.050e-2040.52CCHC-type domain-containing protein n=1 Tax=viral ... [more]
A0A6C0ASW7_9ZZZZ1.310e-2038.60Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0JC79_9ZZZZ4.000e-2038.60Uncharacterized protein n=1 Tax=viral metagenome T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:431198..431542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152434|gw1.3.453.1
BRITEko00000,ko03000
KEGG koko:K09250
Descriptionzinc finger
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2E365@1|root,2SAAX@2759|Eukaryota
Evalue1.19e-20
Seed ortholog4792.ETI40842
Hectar predicted targeting categoryother localisation
TranscriptId152756
TrackFilteredModels1
ProteinId152434
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152434gene_67Tribonema minus UTEX_B_3156 geneContig_3 431198..431542 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_67_1exon_67_1Tribonema minus UTEX_B_3156 exonContig_3 431198..431542 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_67CDS_67Tribonema minus UTEX_B_3156 CDSContig_3 431198..431542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152434Trimin1|152434|gw1.3.453.1Tribonema minus UTEX_B_3156 polypeptideContig_3 431198..431542 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_67 ID=mRNA_67|Name=jgi.p|Trimin1|152434|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=345bp|location=Sequence derived from alignment at Contig_3:431198..431542- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCGTGTACACACTGAAGCTGAGGGGGGGCAAATATTACGTGGGGTTCAC
GACTAACCTTCCCAAGCGACTCGAGCAGCACTTTACGGGCACCGACGGTG
CAATGTGGACGAAGCATTACCCCATGGAGCGAGTCGTCAACATTGAGTAC
AATGGCAACAAGTTCAAGGAAGCGACGGCGACGCTGATGCTGATGGCGAT
TCACGGCCTCAACAACGTCAGAGGTGGCTCATACATTACGGCTCGGTTTA
CACCGGAAGAGAGGCGGGCCATTGAGAAGCAGCTGTGGGGAGCGACGGAT
GCGTGCCTCAAGTGCGGCGACCCCACGCACTTCGCGGCGGACTGC
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protein sequence of jgi.p|Trimin1|152434

>Trimin1|152434|gw1.3.453.1 ID=Trimin1|152434|gw1.3.453.1|Name=jgi.p|Trimin1|152434|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=115bp
VVYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEY
NGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATD
ACLKCGDPTHFAADC
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mRNA from alignment at Contig_3:431198..431542-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_67 ID=mRNA_67|Name=jgi.p|Trimin1|152434|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=345bp|location=Sequence derived from alignment at Contig_3:431198..431542- (Tribonema minus UTEX_B_3156 )
GTCGTGTACACACTGAAGCTGAGGGGGGGCAAATATTACGTGGGGTTCAC GACTAACCTTCCCAAGCGACTCGAGCAGCACTTTACGGGCACCGACGGTG CAATGTGGACGAAGCATTACCCCATGGAGCGAGTCGTCAACATTGAGTAC AATGGCAACAAGTTCAAGGAAGCGACGGCGACGCTGATGCTGATGGCGAT TCACGGCCTCAACAACGTCAGAGGTGGCTCATACATTACGGCTCGGTTTA CACCGGAAGAGAGGCGGGCCATTGAGAAGCAGCTGTGGGGAGCGACGGAT GCGTGCCTCAAGTGCGGCGACCCCACGCACTTCGCGGCGGACTGC
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Coding sequence (CDS) from alignment at Contig_3:431198..431542-

>mRNA_67 ID=mRNA_67|Name=jgi.p|Trimin1|152434|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=345bp|location=Sequence derived from alignment at Contig_3:431198..431542- (Tribonema minus UTEX_B_3156 )
GTCGTGTACACACTGAAGCTGAGGGGGGGCAAATATTACGTGGGGTTCAC
GACTAACCTTCCCAAGCGACTCGAGCAGCACTTTACGGGCACCGACGGTG
CAATGTGGACGAAGCATTACCCCATGGAGCGAGTCGTCAACATTGAGTAC
AATGGCAACAAGTTCAAGGAAGCGACGGCGACGCTGATGCTGATGGCGAT
TCACGGCCTCAACAACGTCAGAGGTGGCTCATACATTACGGCTCGGTTTA
CACCGGAAGAGAGGCGGGCCATTGAGAAGCAGCTGTGGGGAGCGACGGAT
GCGTGCCTCAAGTGCGGCGACCCCACGCACTTCGCGGCGGACTGC
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