mRNA_67 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|152434 vs. uniprot
Match: A0A835YZI4_9STRA (CCHC-type domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZI4_9STRA) HSP 1 Score: 248 bits (632), Expect = 1.720e-83 Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1
Query: 1 VVYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 345
VVYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC
Sbjct: 1 VVYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 115
BLAST of jgi.p|Trimin1|152434 vs. uniprot
Match: A0A835YSD6_9STRA (GIY-YIG domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSD6_9STRA) HSP 1 Score: 217 bits (552), Expect = 1.580e-70 Identity = 95/114 (83.33%), Postives = 107/114 (93.86%), Query Frame = 1
Query: 4 VYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 345
VYTLKLRGGK+YVGFT NLPKRLEQHFTGTD AMWTK+YPMERV++IEYNGNKF E T LMLMA+HG++NVRGG+++TARFTP+ER+AIEKQLWGATDACLKCGDPTHFA DC
Sbjct: 1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDC 114
BLAST of jgi.p|Trimin1|152434 vs. uniprot
Match: A0A6C0HUW7_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HUW7_9ZZZZ) HSP 1 Score: 101 bits (252), Expect = 7.470e-24 Identity = 51/114 (44.74%), Postives = 66/114 (57.89%), Query Frame = 1
Query: 4 VYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 345
+Y L+L KYYVG T N RLEQHFT + G+ WTK Y RV+ I N + F E TL M++HG+NNVRGGS+ + I++ L G+T+ C CG HFA C
Sbjct: 33 IYILELTNNKYYVGKTNNPTFRLEQHFTNS-GSAWTKKYSPIRVIEIIPNCDDFDEDKYTLKYMSMHGVNNVRGGSFCQLKLDKSNTDTIQRMLDGSTNKCYICGQSNHFARQC 145
BLAST of jgi.p|Trimin1|152434 vs. uniprot
Match: A0A3G5A8D2_9VIRU (GIY-YIG nuclease n=1 Tax=Hyperionvirus sp. TaxID=2487770 RepID=A0A3G5A8D2_9VIRU) HSP 1 Score: 97.8 bits (242), Expect = 5.770e-23 Identity = 49/114 (42.98%), Postives = 66/114 (57.89%), Query Frame = 1
Query: 4 VYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 345
+Y LKL GKYYVG T KR+E+H G+ WT+ Y V++I N + F E TL LM+ G+ NVRGGS+++ E+ ++I L A + C KCG HFAADC
Sbjct: 3 IYLLKLEAGKYYVGRTNKEEKRIEEHIE-LFGSEWTRKYKYVEVMDIIKNADSFDEDKYTLKLMSEFGIENVRGGSFVSVTLNDEQIQSISLMLRNAENKCFKCGGIGHFAADC 115
BLAST of jgi.p|Trimin1|152434 vs. uniprot
Match: A0A6C0JPV8_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JPV8_9ZZZZ) HSP 1 Score: 96.7 bits (239), Expect = 8.470e-23 Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 1
Query: 4 VYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 345
+Y L+L+GG+YYVG T ++ +R +QH G G+ WTK Y + N + F E M I+G+ NVRGGSY++ + T E+ A++ ++ ATD C +CG HFA +C
Sbjct: 5 IYILRLQGGRYYVGKTDDVDRRYQQHMKGY-GSAWTKKYSPICIAKQIPNASPFDEDRYVKEYMDIYGIQNVRGGSYVSIKLTEEQENALKLEIRAATDKCTRCGRDGHFAKNC 117
BLAST of jgi.p|Trimin1|152434 vs. uniprot
Match: A0A6C0K9G4_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0K9G4_9ZZZZ) HSP 1 Score: 96.3 bits (238), Expect = 2.180e-22 Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = 1
Query: 4 VYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 345
+Y LKL+ GKYYVG TT+L +R ++H GT A WTK Y V N + F E T + M HG+ NVRG +Y +R +++++ A DAC+KCG HFA C
Sbjct: 6 IYILKLQSGKYYVGKTTDLERRKQEHINGTASA-WTKKYKPVSVEKTIPNASAFDEDKWTKIYMEKHGVENVRGAAYSQMELDEAQRETLQREIRSAKDACMKCGRSGHFAKSC 118
BLAST of jgi.p|Trimin1|152434 vs. uniprot
Match: A0A6C0DJP0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DJP0_9ZZZZ) HSP 1 Score: 92.4 bits (228), Expect = 4.640e-21 Identity = 43/114 (37.72%), Postives = 64/114 (56.14%), Query Frame = 1
Query: 4 VYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 345
+Y LKL+GGKYYVG ++++ R +QH G G+ WTK Y +V + E T M +G+ NVRGG+Y+T + ++K+LW A+D C +CG H+A C
Sbjct: 6 IYVLKLQGGKYYVGKSSDVIGRFQQHMNG-QGSSWTKKYKPMSLVESRDGVSPLMEDMITKEYMVKYGIENVRGGAYVTEELDEVQEYNLQKELWAASDCCTECGRKGHWAKTC 118
BLAST of jgi.p|Trimin1|152434 vs. uniprot
Match: A0A6C0FCP6_9ZZZZ (CCHC-type domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0FCP6_9ZZZZ) HSP 1 Score: 90.5 bits (223), Expect = 1.050e-20 Identity = 47/116 (40.52%), Postives = 63/116 (54.31%), Query Frame = 1
Query: 4 VYTLKLRGGKYYVGFTTNLPKRLEQHFT--GTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 345
+Y L L KYYVG T N RL+ HF +GA WT+ YP V I N + F E T M M HG++NVRGGSY+ ++ +EK+++ A ++C CG HF A C
Sbjct: 4 IYILLLEQQKYYVGKTNNPIFRLKDHFHEGSKNGAAWTRKYPPLEVEKIIPNCDNFDEDKITKMYMKQHGIDNVRGGSYVKISLDEMQKLLLEKEIFTAENSCFHCGQKGHFIATC 119
BLAST of jgi.p|Trimin1|152434 vs. uniprot
Match: A0A6C0ASW7_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0ASW7_9ZZZZ) HSP 1 Score: 91.7 bits (226), Expect = 1.310e-20 Identity = 44/114 (38.60%), Postives = 65/114 (57.02%), Query Frame = 1
Query: 4 VYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 345
+YTL+L GGKYY+G T N RLE HF ++G+ WTK Y R++ ++ N + + E T M +G+NNVRGGS+++ + +++ G D C C HFA DC
Sbjct: 4 IYTLQLEGGKYYIGKTNNPQFRLESHFN-SNGSEWTKLYKPIRILELKPNCDDYDEDKITRQYMDKYGINNVRGGSFVSIKLQKHTIDTLKQMRNGTNDKCFVCEKVGHFAKDC 116
BLAST of jgi.p|Trimin1|152434 vs. uniprot
Match: A0A6C0JC79_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JC79_9ZZZZ) HSP 1 Score: 90.1 bits (222), Expect = 4.000e-20 Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 1
Query: 4 VYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 345
+YT++L GKYY+G T N RL+ HF ++G+ WTK Y +V+ I N + + E T+ M +G+NNVRGGS+++ + ++K GA + C CG HFA DC
Sbjct: 4 IYTIQLDKGKYYIGKTNNPQFRLKSHFN-SNGSEWTKIYKPLKVLEITPNCDDYDEDKITIQYMDKYGINNVRGGSFVSVKLDRSTIDTLKKMSNGANNKCFICGKGGHFAKDC 116 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152434 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_67 ID=mRNA_67|Name=jgi.p|Trimin1|152434|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=345bp|location=Sequence derived from alignment at Contig_3:431198..431542- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTCGTGTACACACTGAAGCTGAGGGGGGGCAAATATTACGTGGGGTTCACback to top protein sequence of jgi.p|Trimin1|152434 >Trimin1|152434|gw1.3.453.1 ID=Trimin1|152434|gw1.3.453.1|Name=jgi.p|Trimin1|152434|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=115bp VVYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYback to top mRNA from alignment at Contig_3:431198..431542- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_67 ID=mRNA_67|Name=jgi.p|Trimin1|152434|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=345bp|location=Sequence derived from alignment at Contig_3:431198..431542- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_3:431198..431542- >mRNA_67 ID=mRNA_67|Name=jgi.p|Trimin1|152434|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=345bp|location=Sequence derived from alignment at Contig_3:431198..431542- (Tribonema minus UTEX_B_3156 )back to top |