mRNA_6697 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|348507
Unique Name	mRNA_6697
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|348507 vs. uniprot
Match: A0A836CFY6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFY6_9STRA)

HSP 1 Score: 124 bits (312), Expect = 4.680e-33
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

Query:    1 MLDRELGYVQQMGQQAMGTTWANYTNVQRPVVECVSRFPACPKDVIAAGAGAEDLRKVVG 180
            MLDRELGYVQQMGQQAMGTTWANYTNVQRPVVECVSRFPACPKDVIAAGAGAEDLRKVVG
Sbjct:    1 MLDRELGYVQQMGQQAMGTTWANYTNVQRPVVECVSRFPACPKDVIAAGAGAEDLRKVVG 60

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348507 vs. uniprot

BLAST of jgi.p|Trimin1|348507 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CFY6_9STRA	4.680e-33	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_25	contig	Contig_25:899729..902202 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|348507\|estExt_Genemark1.C_Ctg_250112
Hectar predicted targeting category	signal anchor
TranscriptId	348829
Track	FilteredModels1
ProteinId	348507

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348507	gene_6697	Tribonema minus UTEX_B_3156	gene	Contig_25 899729..902202 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348507	Trimin1\|348507\|estExt_Genemark1.C_Ctg_250112	Tribonema minus UTEX_B_3156	polypeptide	Contig_25 899729..901723 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_6697_1	exon_6697_1	Tribonema minus UTEX_B_3156	exon	Contig_25 899729..899816 +
exon_6697_2	exon_6697_2	Tribonema minus UTEX_B_3156	exon	Contig_25 899894..899934 +
exon_6697_3	exon_6697_3	Tribonema minus UTEX_B_3156	exon	Contig_25 900455..900520 +
exon_6697_4	exon_6697_4	Tribonema minus UTEX_B_3156	exon	Contig_25 901643..902202 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_6697	CDS_6697	Tribonema minus UTEX_B_3156	CDS	Contig_25 899729..899816 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_6697	UTR3_6697	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_25 901724..902202 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_25:899729..902202+
coding sequence from alignment at Contig_25:899729..902202+

spliced messenger RNA

>mRNA_6697 ID=mRNA_6697|Name=jgi.p|Trimin1|348507|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=755bp|location=Sequence derived from alignment at Contig_25:899729..902202+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGACCGCGAGCTGGGCTACGTGCAGCAGATGGGGCAGCAAGCAAT
GGGCACGACATGGGCCAACTACACGAATGTGCAACGGCCGGTGGTGGAGT
GCGTGAGCAGGTTCCCTGCCTGCCCCAAGGACGTGATTGCTGCTGGTGCG
GGTGCTGAGGATTTGCGAAAAGTCGTGGGGGGAGCGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCCGCCACCGCCGCCGCCGCCACCACCATTGC
TGGTGGTGCTGGCGGTCGTCCCTTAACCCAGATTGTCATGAACTACGATC
ACCATTGCTGTACAGGGCGTTGCTGGTATGAGCGTATGAGCGCGCGCTGC
ATCAGCGGAGCACACCGAGTCTCCACCGCGGTGCGTTGATGGTCAGCTGA
TCAGCGCAAAAACCGGAAGTGTGGCTGGTGCGTCAGCAGCGGATGTTTTG
GCACGCCTGCTGTCTCAGTGCGGCTGGGCCTCGCAGCCAATTAGCAGGCG
TGCCACGACGGAGCATGCGATGCAGTCGCAGGCGGTTACCAGCATTTGAA
TCAGCCAGCATCTGATGATTAGGCTGATCACAAGCCCCTCTGTTTTAGTT
GCTTATGTGCGCGTATCAGGTGCTTAAGGTCTTGTGCCAGCTAGAACTTG
CTTGATGACTCCTTACTTGGCACGGGCAGTCTTTTACATGAGAGTGAAGC
CGCTGTTTTGTTGGCACACACACCACATTACTGATAATGAACAAGTTGAA
TCCTA

protein sequence of jgi.p|Trimin1|348507

>Trimin1|348507|estExt_Genemark1.C_Ctg_250112 ID=Trimin1|348507|estExt_Genemark1.C_Ctg_250112|Name=jgi.p|Trimin1|348507|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=92bp
MLDRELGYVQQMGQQAMGTTWANYTNVQRPVVECVSRFPACPKDVIAAGA
GAEDLRKVVGGALLLLLLLLLLLPPPPPPPPPLLVVLAVVP*

mRNA from alignment at Contig_25:899729..902202+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6697 ID=mRNA_6697|Name=jgi.p|Trimin1|348507|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2474bp|location=Sequence derived from alignment at Contig_25:899729..902202+ (Tribonema minus UTEX_B_3156 )
ATGCTGGACCGCGAGCTGGGCTACGTGCAGCAGATGGGGCAGCAAGCAAT
GGGCACGACATGGGCCAACTACACGAATGTGCAACGGCGTGGGATGGAGC
AGCAGCAGCACCACTGGCAGCAGCAGCAGCAGGCTGCAGCAGCACTGCGG
CGCGCACCGCAACAGCGGTGGTGGAGTGCGTGAGCAGGTTCCCTGCCTGC
CCCAAGGTGCAGCGGCATGGCGTCCGTGCAATCGCTAAATGCACCACAGC
TGCCTGTCATGCCGACATGTTGCCTGGCGGGCTGCCAGCCAACAGGTTCC
TGCCCAGCACCACTCACTCTGTTACACGCCTACTGCCACCCTGTATGTGC
ACATGAAGTGACATTAGAGGCTTACTCTTTCCCCGCGAGTATTTTTTGCG
ACCCGACAAGGATGAGCGATGTGATTGGGTGATAGTGACCCCTTCTTAGT
GTGCCCTACGACAAGGCCATCCAATCAGATCGCTTGCTCTGCGACAAGCC
TCCTGGGTCGTCCAAGTCCTGGGTCTGGCAAGCTGCTCGCAGCACCACCA
GGCGATGCACAAGCGCTTGGCACGTGTTGTGCGGTTGGCATCGATGTTAG
TGAGTATTGCATCACTGCTGCAGGTCTTGGGCGCTCTTGGCATGGAGTGA
ACCACACAAAAAAGCTGCTGCGCCGCCTTTGAGGATCACACTTGCTGGCG
CAGCTGTGCGTGTACAGTGATCGCAGGACGTGATTGCTGCTGGTGCGGGT
GCTGAGGATTTGCGAAAAGTCGTGGGGGGAGCGCTGCTGCTGGTGAGTAG
AGTGCGAAAGCGGAGGCAGAGGCGGAGCTGCCTGGTGGGCGCGTTGCGCG
GTGGCAAACCTGGTCAGACCGCACCAACTCTCAAGGTAATGAGGATCATG
TAAATGCTGGTGTTAAGAAAGGGTGTATAAACTGCAGCAACAGCACTTTG
CCGAGCGAGCATACCCATAATATTGTCATCGCAGGGCACCGATCGGCGTA
GACTCCGGCGCTTGTATTGAATGAGGCTTGTATGCCATTGCAGCCTGTCA
TGCAGGCCGCTCCGGTGTTGCACGGGCAGCACGGCGTCAAAACATTGTTC
CGTGATGTGTTCGCAGTATTGCACTGAAGGTAGCTTTAGAAGCCACCTGT
TCAGCACAGAAGTTGATGTGTACTGCCCCCTAGCAAAGGATGTCAGAATG
CATGTGCACATAATCTCTTGACAATGTGCTACGTTCAGGAAACTGCAAAA
ACCGATAGCTTTTTGCAGATCTGCATCATCCGCTGTTGATAAGAGGTGCT
TGCGGCCCTGGGGCTACAGCAAAAACTACAGAGAAAGGCACTGGTCCTAA
CCGATCGCGCGTGACATGCGAGAAGCAAGTGCAGACCACTACGTAAACAG
CGCAGTCACAGTTATGTGCTTGTTGAAGGATGAACTGTATCAAATTTATG
ACATAATGCCTGGGCACTTATCAATTGCCACTGCCAGAGCACAATCGTCA
ATTTGCAGCGTACCAGTACAGCCTGGTATGCCACCTTGTCACGCGATGTA
CTGCGAAATATTAAAAGCAGATGCAAGCACTTATTGTTTCACTCAGTTGT
GCTTCATCGACTGCATCAGCCTGCCATTGTTCAGCGTGCTACCAGCGTCA
TAACGATCTGTGGCGATCAGTCACCATAGCCAGGCTATAGCATAAATTGA
AGATGAGCAATTCGCAGATTGCCCTCAAGTAGTTACAAGCTTCAATACCT
CCAAGTAACATAGAAGAGGTGTACGTCAACAAGTACCTCCAAGTAACATA
GAAGAGGTGTACGTCAACAAGTACATACGCGCATGACTGTTCACTCTGAA
CACAGGACGACTAAAGCAGCGATGTAGTCTTGTTGATGCTGCTGCGCCGC
ACGTGCTGTGCAAGCTGCTGCTGCTGCTGCTGCTGCTGCCGCCACCGCCG
CCGCCGCCACCACCATTGCTGGTGGTGCTGGCGGTCGTCCCTTAACCCAG
ATTGTCATGAACTACGATCACCATTGCTGTACAGGGCGTTGCTGGTATGA
GCGTATGAGCGCGCGCTGCATCAGCGGAGCACACCGAGTCTCCACCGCGG
TGCGTTGATGGTCAGCTGATCAGCGCAAAAACCGGAAGTGTGGCTGGTGC
GTCAGCAGCGGATGTTTTGGCACGCCTGCTGTCTCAGTGCGGCTGGGCCT
CGCAGCCAATTAGCAGGCGTGCCACGACGGAGCATGCGATGCAGTCGCAG
GCGGTTACCAGCATTTGAATCAGCCAGCATCTGATGATTAGGCTGATCAC
AAGCCCCTCTGTTTTAGTTGCTTATGTGCGCGTATCAGGTGCTTAAGGTC
TTGTGCCAGCTAGAACTTGCTTGATGACTCCTTACTTGGCACGGGCAGTC
TTTTACATGAGAGTGAAGCCGCTGTTTTGTTGGCACACACACCACATTAC
TGATAATGAACAAGTTGAATCCTA

Coding sequence (CDS) from alignment at Contig_25:899729..902202+

>mRNA_6697 ID=mRNA_6697|Name=jgi.p|Trimin1|348507|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=276bp|location=Sequence derived from alignment at Contig_25:899729..902202+ (Tribonema minus UTEX_B_3156 )
ATGCTGGACCGCGAGCTGGGCTACGTGCAGCAGATGGGGCAGCAAGCAAT
GGGCACGACATGGGCCAACTACACGAATGTGCAACGGCCGGTGGTGGAGT
GCGTGAGCAGGTTCCCTGCCTGCCCCAAGGACGTGATTGCTGCTGGTGCG
GGTGCTGAGGATTTGCGAAAAGTCGTGGGGGGAGCGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCCGCCACCGCCGCCGCCGCCACCACCATTGC
TGGTGGTGCTGGCGGTCGTCCCTTAA