mRNA_6684 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348500
Unique NamemRNA_6684
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|348500 vs. uniprot
Match: A0A835YZS1_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZS1_9STRA)

HSP 1 Score: 217 bits (553), Expect = 4.910e-71
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 3 
Query:   57 MVKSCGTTEELKSAIDGAGGKLVVIDFFATWCGPCRQIAPLMEQWSNEMTDVVYLKVDVDINKDAAEDYGIEAMPTFKFIKNGEVIEEFVGANPSGLKAKIEALRK 374
            MVKSCGTTEELKSAIDGAGGKLVVIDFFATWCGPCRQIAPLMEQWSNEMTDVVYLKVDVDINKDAAEDYGIEAMPTFKFIKNGEVIEEFVGANPSGLKAKIEALRK
Sbjct:    1 MVKSCGTTEELKSAIDGAGGKLVVIDFFATWCGPCRQIAPLMEQWSNEMTDVVYLKVDVDINKDAAEDYGIEAMPTFKFIKNGEVIEEFVGANPSGLKAKIEALRK 106
[Close]
BLAST of jgi.p|Trimin1|348500 vs. uniprot
Match: A0A6H5JSH7_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSH7_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 4.440e-37
Identity = 61/98 (62.24%), Postives = 76/98 (77.55%), Query Frame = 3 
Query:   60 VKSCGTTEELKSAIDGAGGKLVVIDFFATWCGPCRQIAPLMEQWSNEMTDVVYLKVDVDINKDAAEDYGIEAMPTFKFIKNGEVIEEFVGANPSGLKA 353
            V  C T E L +A+ GAG KLVV+DF ATWCGPC++IAP + + S  +TDVV+LKVDVD N DA+E YGIEAMPTFKFIKNGEV+E   GA+ + ++A
Sbjct:    3 VTPCDTPEALSTALAGAGSKLVVVDFHATWCGPCKRIAPFLAKLSETLTDVVFLKVDVDENSDASEKYGIEAMPTFKFIKNGEVVETVTGADEASIEA 100
[Close]
BLAST of jgi.p|Trimin1|348500 vs. uniprot
Match: UPI00083FE39C (thioredoxin-2 n=1 Tax=Ceratina calcarata TaxID=156304 RepID=UPI00083FE39C)

HSP 1 Score: 125 bits (315), Expect = 8.180e-35
Identity = 61/102 (59.80%), Postives = 77/102 (75.49%), Query Frame = 3 
Query:   57 MVKSCGTTEELKSAIDGAGGKLVVIDFFATWCGPCRQIAPLMEQWSNEMTDVVYLKVDVDINKDAAEDYGIEAMPTFKFIKNGEVIEEFVGANPSGLKAKIE 362
            MV    + ++LK  +DGAG KLVVIDFFATWCGPC+ IAP ME  S E+TDV++LKVDVD+ +D A +Y I +MPTF FIKNG+V+E F GAN   LK+ I+
Sbjct:    1 MVVEIKSADDLKVQLDGAGDKLVVIDFFATWCGPCKMIAPKMEGLSKEITDVIFLKVDVDVCEDLAGEYEITSMPTFIFIKNGKVLETFSGANFDKLKSTIQ 102
[Close]
BLAST of jgi.p|Trimin1|348500 vs. uniprot
Match: UPI0010F86AA8 (thioredoxin-2-like n=1 Tax=Osmia bicornis bicornis TaxID=1437191 RepID=UPI0010F86AA8)

HSP 1 Score: 123 bits (309), Expect = 6.660e-34
Identity = 57/101 (56.44%), Postives = 75/101 (74.26%), Query Frame = 3 
Query:   57 MVKSCGTTEELKSAIDGAGGKLVVIDFFATWCGPCRQIAPLMEQWSNEMTDVVYLKVDVDINKDAAEDYGIEAMPTFKFIKNGEVIEEFVGANPSGLKAKI 359
            MV    + E+LKS I+ AG +L+VIDF+ATWCGPC+ IAP +E+ S EM DV+++KVDVD+ +D A DY I +MPTF FIKNG+V+E F GAN   +K  I
Sbjct:    1 MVVEIESVEDLKSKIEKAGDQLIVIDFYATWCGPCKMIAPKIEELSKEMQDVIFVKVDVDVREDIATDYDINSMPTFVFIKNGKVVESFAGANYDKVKDTI 101
[Close]
BLAST of jgi.p|Trimin1|348500 vs. uniprot
Match: A0A7M7T7S9_NASVI (Thioredoxin n=3 Tax=Pteromalinae TaxID=272242 RepID=A0A7M7T7S9_NASVI)

HSP 1 Score: 120 bits (301), Expect = 1.090e-32
Identity = 59/104 (56.73%), Postives = 77/104 (74.04%), Query Frame = 3 
Query:   51 VIMVKSCGTTEELKSAIDGAGGKLVVIDFFATWCGPCRQIAPLMEQWSNEMTDVVYLKVDVDINKDAAEDYGIEAMPTFKFIKNGEVIEEFVGANPSGLKAKIE 362
            VI VK   T EELK+ +  AG KLVVIDFFATWCGPC+ IAP +++ S E+TDVV+LKVDVD  +  AE+Y + +MPTF FIKNG V+++F GAN   +K  ++
Sbjct:    2 VIQVK---TAEELKTKLTEAGEKLVVIDFFATWCGPCKMIAPKLDELSQELTDVVFLKVDVDELEGVAEEYDVNSMPTFVFIKNGSVLDKFSGANIEKVKLTVQ 102
[Close]
BLAST of jgi.p|Trimin1|348500 vs. uniprot
Match: A0A076FDZ6_9MAXI (Thioredoxin 2 (Fragment) n=1 Tax=Paracyclopina nana TaxID=565004 RepID=A0A076FDZ6_9MAXI)

HSP 1 Score: 120 bits (301), Expect = 1.090e-32
Identity = 54/102 (52.94%), Postives = 75/102 (73.53%), Query Frame = 3 
Query:   57 MVKSCGTTEELKSAIDGAGGKLVVIDFFATWCGPCRQIAPLMEQWSNEMTDVVYLKVDVDINKDAAEDYGIEAMPTFKFIKNGEVIEEFVGANPSGLKAKIE 362
            MV    T  +L + ++ AG KLVVIDFFATWCGPC+ IAP +E+W++ M +VV++KVDVD N++AA++Y I AMPTF  IKN E + + +GANP  LK  ++
Sbjct:    1 MVSQLATLADLNTTLEEAGDKLVVIDFFATWCGPCKMIAPKIEEWASAMDNVVFVKVDVDENEEAAKEYNISAMPTFILIKNKEKVADLMGANPDKLKELVD 102
[Close]
BLAST of jgi.p|Trimin1|348500 vs. uniprot
Match: D2V4N1_NAEGR (Thioredoxin n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V4N1_NAEGR)

HSP 1 Score: 119 bits (298), Expect = 3.020e-32
Identity = 57/97 (58.76%), Postives = 72/97 (74.23%), Query Frame = 3 
Query:   57 MVKSCGTTEELKSAIDGAGGKLVVIDFFATWCGPCRQIAPLMEQWSNEMTDVVYLKVDVDINKDAAEDYGIEAMPTFKFIKNGEVIEEFVGANPSGL 347
            MVK   +  ELKS I+G  G LVV+DFFATWCGPC++IAP +E+WS   T V++LKVDVDIN ++A  Y +EAMPTF F K G+ I+  VGANP+ L
Sbjct:    1 MVKQVDSHSELKSLIEGHEG-LVVVDFFATWCGPCKRIAPTIEEWSKTHTTVLFLKVDVDINDESASVYSVEAMPTFLFFKGGQKIKSVVGANPNAL 96
[Close]
BLAST of jgi.p|Trimin1|348500 vs. uniprot
Match: A0A7M7H610_NASVI (Thioredoxin domain-containing protein n=1 Tax=Nasonia vitripennis TaxID=7425 RepID=A0A7M7H610_NASVI)

HSP 1 Score: 117 bits (293), Expect = 1.450e-31
Identity = 54/94 (57.45%), Postives = 72/94 (76.60%), Query Frame = 3 
Query:   81 EELKSAIDGAGGKLVVIDFFATWCGPCRQIAPLMEQWSNEMTDVVYLKVDVDINKDAAEDYGIEAMPTFKFIKNGEVIEEFVGANPSGLKAKIE 362
            EELK+ +  AG KLVVIDFFATWCGPC+ IAP +++ S E+TDVV+LKVDVD  +  AE+Y + +MPTF FIKNG V+++F GAN   +K  ++
Sbjct:    2 EELKTKLTEAGEKLVVIDFFATWCGPCKMIAPKLDELSQELTDVVFLKVDVDELEGVAEEYDVNSMPTFVFIKNGSVLDKFSGANIEKVKLTVQ 95
[Close]
BLAST of jgi.p|Trimin1|348500 vs. uniprot
Match: UPI00063F3A80 (thioredoxin-2 n=1 Tax=Monomorium pharaonis TaxID=307658 RepID=UPI00063F3A80)

HSP 1 Score: 117 bits (294), Expect = 1.460e-31
Identity = 56/95 (58.95%), Postives = 71/95 (74.74%), Query Frame = 3 
Query:   78 TEELKSAIDGAGGKLVVIDFFATWCGPCRQIAPLMEQWSNEMTDVVYLKVDVDINKDAAEDYGIEAMPTFKFIKNGEVIEEFVGANPSGLKAKIE 362
            +++LKS +  AG KLVVIDFFA WCGPC+ I P++E+ S EM DVV+LKVDVD  +D A +Y I +MPTF FIK G+V+E F GAN   LKA I+
Sbjct:   13 SDDLKSKLQDAGDKLVVIDFFAVWCGPCKMIGPMVEELSKEMQDVVFLKVDVDECEDVAAEYEISSMPTFIFIKEGKVLESFSGANIEKLKATIQ 107
[Close]
BLAST of jgi.p|Trimin1|348500 vs. uniprot
Match: A0A0P5R5L8_9CRUS (Thioredoxin n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5R5L8_9CRUS)

HSP 1 Score: 117 bits (293), Expect = 1.790e-31
Identity = 54/102 (52.94%), Postives = 71/102 (69.61%), Query Frame = 3 
Query:   57 MVKSCGTTEELKSAIDGAGGKLVVIDFFATWCGPCRQIAPLMEQWSNEMTDVVYLKVDVDINKDAAEDYGIEAMPTFKFIKNGEVIEEFVGANPSGLKAKIE 362
            MV    + ++    +  AGGKLVV+DF+ATWCGPC+ IAP +E  S E+TDVV+LKVDVD  +D A DY I  MPTF ++KNG  + EF GAN + L+A I+
Sbjct:    1 MVYQVASKDDFSEQLKNAGGKLVVVDFYATWCGPCKMIAPKIEAMSKELTDVVFLKVDVDECEDVASDYNISCMPTFLYLKNGVKVAEFSGANETQLRALIQ 102
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348500 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZS1_9STRA4.910e-71100.00Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
A0A6H5JSH7_9PHAE4.440e-3762.24Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
UPI00083FE39C8.180e-3559.80thioredoxin-2 n=1 Tax=Ceratina calcarata TaxID=156... [more]
UPI0010F86AA86.660e-3456.44thioredoxin-2-like n=1 Tax=Osmia bicornis bicornis... [more]
A0A7M7T7S9_NASVI1.090e-3256.73Thioredoxin n=3 Tax=Pteromalinae TaxID=272242 RepI... [more]
A0A076FDZ6_9MAXI1.090e-3252.94Thioredoxin 2 (Fragment) n=1 Tax=Paracyclopina nan... [more]
D2V4N1_NAEGR3.020e-3258.76Thioredoxin n=1 Tax=Naegleria gruberi TaxID=5762 R... [more]
A0A7M7H610_NASVI1.450e-3157.45Thioredoxin domain-containing protein n=1 Tax=Naso... [more]
UPI00063F3A801.460e-3158.95thioredoxin-2 n=1 Tax=Monomorium pharaonis TaxID=3... [more]
A0A0P5R5L8_9CRUS1.790e-3152.94Thioredoxin n=1 Tax=Daphnia magna TaxID=35525 RepI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_25contigContig_25:776569..778234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348500|estExt_Genemark1.C_Ctg_250095
Descriptioncell redox homeostasis
COG categoryCO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0526@1|root,KOG0907@2759|Eukaryota
Evalue1.71e-38
Seed ortholog2880.D7FGZ1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-26_002850.1
TranscriptId348822
TrackFilteredModels1
ProteinId348500
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348500gene_6684Tribonema minus UTEX_B_3156 geneContig_25 776569..778234 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348500Trimin1|348500|estExt_Genemark1.C_Ctg_250095Tribonema minus UTEX_B_3156 polypeptideContig_25 776630..778178 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6684_5exon_6684_5Tribonema minus UTEX_B_3156 exonContig_25 776569..776707 -
exon_6684_4exon_6684_4Tribonema minus UTEX_B_3156 exonContig_25 777126..777200 -
exon_6684_3exon_6684_3Tribonema minus UTEX_B_3156 exonContig_25 777465..777540 -
exon_6684_2exon_6684_2Tribonema minus UTEX_B_3156 exonContig_25 777799..777824 -
exon_6684_1exon_6684_1Tribonema minus UTEX_B_3156 exonContig_25 778113..778234 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6684UTR3_6684Tribonema minus UTEX_B_3156 three_prime_UTRContig_25 776569..776629 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6684CDS_6684Tribonema minus UTEX_B_3156 CDSContig_25 778113..778178 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6684UTR5_6684Tribonema minus UTEX_B_3156 five_prime_UTRContig_25 778179..778234 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6684 ID=mRNA_6684|Name=jgi.p|Trimin1|348500|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=438bp|location=Sequence derived from alignment at Contig_25:776569..778234- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTCCTCTACTCAGAAAACCACTGAAGGAGGCATAGGCATACAGCGTTTGT
GTGATTATGGTCAAGTCTTGCGGCACCACCGAGGAGCTCAAGAGCGCCAT
CGATGGCGCAGGAGGCAAATTGGTTGTGATCGACTTTTTCGCAACGTGGT
GCGGACCGTGCCGGCAGATCGCGCCCCTCATGGAGCAATGGTCAAATGAG
ATGACGGACGTCGTCTACTTGAAGGTGGACGTGGACATTAACAAGGACGC
AGCGGAGGACTACGGCATTGAGGCTATGCCCACCTTCAAGTTCATCAAGA
ACGGCGAGGTGATCGAGGAGTTTGTCGGCGCCAACCCAAGCGGCCTGAAG
GCGAAAATCGAGGCGCTGAGGAAGTAGCGGCTAGGGAGTGCAAGGGGGAA
GCTGCGCAGTGCCCACGACGTTTTTCGGCGGTGCGCTG
back to top

protein sequence of jgi.p|Trimin1|348500

>Trimin1|348500|estExt_Genemark1.C_Ctg_250095 ID=Trimin1|348500|estExt_Genemark1.C_Ctg_250095|Name=jgi.p|Trimin1|348500|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=107bp
MVKSCGTTEELKSAIDGAGGKLVVIDFFATWCGPCRQIAPLMEQWSNEMT
DVVYLKVDVDINKDAAEDYGIEAMPTFKFIKNGEVIEEFVGANPSGLKAK
IEALRK*
back to top

mRNA from alignment at Contig_25:776569..778234-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6684 ID=mRNA_6684|Name=jgi.p|Trimin1|348500|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1666bp|location=Sequence derived from alignment at Contig_25:776569..778234- (Tribonema minus UTEX_B_3156 )
TTCCTCTACTCAGAAAACCACTGAAGGAGGCATAGGCATACAGCGTTTGT
GTGATTATGGTCAAGTCTTGCGGCACCACCGAGGAGCTCAAGAGCGCCAT
CGATGGCGCAGGAGGCAAATTGGTCAGTATCCTGTTGAGTTGCTTACACC
CAGCAGAAGCAGGCAACGTGGTGCGCGCTGTCCAAGCAGCATATTTGCGT
GCAGACACAGTAGCGTCAAGGTTGTTCCTGATGTATTAGCGTGCGTCTGC
ATCCGATGTTGCCAGTGCATTGTCGTAAAGTCGCTAGACTGTCCAGACTG
CACACATTTACAGGGATTTGTTCTGACTTAACTCGGGCTTGCTGCCAGTT
TGCTGACGTTGTTGTTGCGACTTTGTGTCTGTCTGGTGCCCCTTTTTCTT
CACCTGACAGGTTGTGATCGACTTTTTCGCAACGTGAGTGCCTACGAGAG
ATTTGTCGCATCGCAGGCATCACTGAGCGAAGCAGTGCCTCGCATGCTCT
CTCGCTCTCTGTTTTCCACACATCCCACTGACGACACCTGTTTCTCTGCA
TGCTCGTGCTGCTGCAGATGGTGAGTGCCTGCGCGAGCGCACGCCACGAG
TGGCCGCCTCACAGGTAACGTGCCTCGACCCCGCAATGATGTGATCCCTG
ACGCCAACATGCGTGATGTTGCCGCTGGTGGTGATGCTCTACAGGTGCGG
ACCGTGCCGGCAGATCGCGCCCCTCATGGAGCAATGGTCAAATGAGATGA
CGGACGTCGTCTACTTGAAGGTCAGTGAGGCAGACACATCTCAACCGCAG
TTGTGCTTCTCACACCACTCCCCTAAGAATGTGCACAACACCGGGCCGAA
ACTGCCCCGGTGCTGCAGGTTTTTTCAAGTCCTTGATACCCTGCATCGGC
CATTAGCACGCAGCTTTCAACGGCACCTGTACGCTCTGCAATTGCTGGGA
TGTCGCTCCGCTGCATCATTGCTGACAGCGCATGCCGGCTGGTGTGTGTG
CGCACCTTTCTGCTGTTGTGTGCACCCGATCCAGGTGGACGTGGACATTA
ACAAGGACGCAGCGGAGGACTACGGCATTGAGGCTATGCCCACCTTCAAG
TTCATCAAGGTCAGTGGCCACTTCGCTGTGCGGCGCTGCTCTCGCCAGGC
AGGGCGGCGTGGAAAGGTCTTCTCTCAAGTCCTTGTGTGTAGCCCATCGC
CGGTGCGCTGTGAGCATTCATCGTGTGTCGTACCACACCCACACAGGCTG
GGGCACAGCTGTGCCGCCACTGACCGCCAATCGCGTTATAACTCGCACTG
GGAAATTGGCAGCGCAACGCCGTCACATCATCATGCATGCTTTGAGCCTG
CTACTGCTCATCGCACTGAGCACTGCTGCAACACTTAACTTCAATCATGA
TACCCCGCTGCTGCTGTGAGTCGCGCTGAGCATCACCATCGTGCACTGCT
GCACGTTCCAGCGCTGCCGCTGCTGCAATCCGTTGTTTCCGCCGTCTGAC
TCGCCGAGCGCTGCTGTTGCCGCGCAGAACGGCGAGGTGATCGAGGAGTT
TGTCGGCGCCAACCCAAGCGGCCTGAAGGCGAAAATCGAGGCGCTGAGGA
AGTAGCGGCTAGGGAGTGCAAGGGGGAAGCTGCGCAGTGCCCACGACGTT
TTTCGGCGGTGCGCTG
back to top

Coding sequence (CDS) from alignment at Contig_25:776569..778234-

>mRNA_6684 ID=mRNA_6684|Name=jgi.p|Trimin1|348500|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=321bp|location=Sequence derived from alignment at Contig_25:776569..778234- (Tribonema minus UTEX_B_3156 )
ATGGTCAAGTCTTGCGGCACCACCGAGGAGCTCAAGAGCGCCATCGATGG
CGCAGGAGGCAAATTGGTTGTGATCGACTTTTTCGCAACGTGGTGCGGAC
CGTGCCGGCAGATCGCGCCCCTCATGGAGCAATGGTCAAATGAGATGACG
GACGTCGTCTACTTGAAGGTGGACGTGGACATTAACAAGGACGCAGCGGA
GGACTACGGCATTGAGGCTATGCCCACCTTCAAGTTCATCAAGAACGGCG
AGGTGATCGAGGAGTTTGTCGGCGCCAACCCAAGCGGCCTGAAGGCGAAA
ATCGAGGCGCTGAGGAAGTAG
back to top