mRNA_6638 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348474
Unique NamemRNA_6638
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|348474 vs. uniprot
Match: A0A835YZN0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZN0_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.510e-17
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 MRPGRAARPQVPALRIAQRTCERFCDMRRAAAAARXXXXXXXXXXXXXXXXXXLRPPSRAQ 183
            MRPGRAARPQVPALRIAQRTCERFCDMRRAAAAARXXXXXXXXXXXXXXXXXXLRPPSRAQ
Sbjct:    1 MRPGRAARPQVPALRIAQRTCERFCDMRRAAAAARXXXXXXXXXXXXXXXXXXLRPPSRAQ 61
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348474 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YZN0_9STRA1.510e-17100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_25contigContig_25:365429..367954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348474|estExt_Genemark1.C_Ctg_250040
Hectar predicted targeting categoryother localisation
TranscriptId348796
TrackFilteredModels1
ProteinId348474
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348474gene_6638Tribonema minus UTEX_B_3156 geneContig_25 365429..367954 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6638_2exon_6638_2Tribonema minus UTEX_B_3156 exonContig_25 365429..365684 -
exon_6638_1exon_6638_1Tribonema minus UTEX_B_3156 exonContig_25 367887..367954 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6638UTR3_6638Tribonema minus UTEX_B_3156 three_prime_UTRContig_25 365429..365566 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6638CDS_6638Tribonema minus UTEX_B_3156 CDSContig_25 367887..367954 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348474Trimin1|348474|estExt_Genemark1.C_Ctg_250040Tribonema minus UTEX_B_3156 polypeptideContig_25 365567..367954 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6638 ID=mRNA_6638|Name=jgi.p|Trimin1|348474|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=324bp|location=Sequence derived from alignment at Contig_25:365429..367954- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCCGGGGCGCGCAGCGCGGCCGCAGGTGCCTGCGCTGCGCATCGC
CCAGCGCACGTGCGAGAGATTCTGTGATATGCGGCGCGCGGCAGCAGCAG
CGCGCACGGCAGCAGCAGCAGCGCCCGCGGCAGCAGCAGCGCCCGCGCCA
GCGGCGGCGCTTCGGCCGCCCTCTCGGGCACAGTAATACTGAAAAGACAA
TCCGAAAGGCAATGACGACTCGCTCACAAGACTGGAAGTGGAAGGCAGCA
CCCGGCATGGGTGGGGGCTGCACTTGCTGCACGCGCCACCTGCCGCGCAA
TGGCGCGGCGGCGGCGACGGTGGC
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protein sequence of jgi.p|Trimin1|348474

>Trimin1|348474|estExt_Genemark1.C_Ctg_250040 ID=Trimin1|348474|estExt_Genemark1.C_Ctg_250040|Name=jgi.p|Trimin1|348474|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=62bp
MRPGRAARPQVPALRIAQRTCERFCDMRRAAAAARTAAAAAPAAAAAPAP
AAALRPPSRAQ*
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mRNA from alignment at Contig_25:365429..367954-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6638 ID=mRNA_6638|Name=jgi.p|Trimin1|348474|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2526bp|location=Sequence derived from alignment at Contig_25:365429..367954- (Tribonema minus UTEX_B_3156 )
ATGAGGCCGGGGCGCGCAGCGCGGCCGCAGGTGCCTGCGCTGCGCATCGC
CCAGCGCACGTGCGAGAGGTCCGGGGCTTGAGCCTCGAGTGCTGAAGCTT
GCACACAGAAGTCTTTTGACTGCTGTGGACATGGTGGAACTGTTCGACTC
GCGGCCAGCTGCCGCAGCAGTGGCGACCACGATCATTGGTGGAAGGCATT
CATTTTGACGGCTAACCACACCTTGTCACCTACTTTGAGCTCTACGATCT
TCTGATTCGTTTTTCCATGTAGGGTCAGAGGTAGGTAACCCCCACCTTGG
GCTTAGGGTCAGGTAACGCTAACCCTAACCTGAATCCTCCAAGTTTTGCA
CAGCGGGGGTGAGCTGCGTACACACCAGTCTTGCGTGCACGGCTGCCACT
CTCAATGTATGGTGTTTGCGCAGTAGGACGCGCTGCGGCAGCGCTGTCGT
GTGAGAGCGGGGGGTCAGGGGGCCCCAGTGGCATGGGGGGACATTTCACT
GGTCGGTTGAGAGGCTTTCGCGCGCCGATTAAAGGCCTTCGTGCGTGAGC
GGCCAGGAAGGCGTCTGCGCTGCGCAGCGCGCAGCATCAGGCCACGCGGT
AGCGTGTGTTACTGTTACATATGCACGTGGCTGAGTGGCAACAGCCTGTG
TTCACGCACGGGGTGTCACTTTGATGTGCGGTCTGTGTTGCACGTGCAAA
TTGCTGATGCTTGTATATGCCGTAGACAGCGCGAGTCGACGACTTCAATC
ATTTTTCTGCAGCTTGTGATATTGCACTTCTTCCCAGGCAAATGCAACGT
CTACATCAGTCATTTTCGGTCACCATCTGTCAAGTGACACTTGAAGGCAG
AGCAACGCTTTCCGGTTCCGAATACGCCCTAGCATCACATCGCGTTTCGC
TGGCCTGCGAATGCTACACGTCAAGGTCGCGCTCTTTGTGACACCAGTAC
AGTTGGAGCCAAAAGTAACTGTTGACTCAAAGCATTATACCGCCAGCGCC
TGTCAAAATGTCGTGATCCACATGGTAACCACACCCAAGGACTGCGAGAA
CTCACCACCTACACCGGCATCCCGGCCGCCTGCGATTATGACGGGCATCG
CCGAACCCGATCCCACAGGGCCTATTGCACGAAGTGCCGCCTAGAGATCC
GCGCAACCTTGCGCGGTGCTGCTGCTATGACAGCCAGCACACGCCTCAGC
AGCAAGTACGCTCCTCCCGCTCCTGCGCTGCCCCTACCCGCCCGCACACC
TTTTCAACAAGAACCTGAACCTCACCATTGAAGTTTGAGTTTAAGTTTGG
GAGCACTTTTTCTTTATTTACAGAGCAGCAAAGCTCAGTAAGATCCGCTG
CGTCCGAAATTATTGTAGTGATCGCTGCAACATAATGCCAATTGAACGTT
TCGGCACAGCTGGTACCATGAAAGCACAGATACGAGCCAAGTCACCCAAC
TGTACAGTATCCTACATAAATCACCCAGAGTACACATGCATACCATCTTG
TCAAGCAACAATGCTCAGCACACCCGGCACTCTTGACCAAGCCCCCTACC
TTCGAGAATGGGACTGTTGATGGCTAGCAGAAGCATATTGTCAATTCAGT
GCGTGCGTTCACGCAAACGCGAACAGACCAGGGCAGCGGGCGGCAAACAC
AAACAGACCGCGAGTCGCGCGTGAAACCTGCAGTGCATGTATTGCTGTGT
ATGCCAACAAGGACATGGGACAGGTAAGTAACGGCGCGCACGCGCCACAG
ACGAGGCATTCGCTGATCTGGCACAGAGAGGGAGGAACGAACATGGGGGT
GGGTCGGGTGAGGGGGCGCACGAGAGCCTGACCGCGCCCGCTCGCCTTGC
GATGGACGCGGCTCATCTCCTTGTAGAAACCCCAACTTCAATATTGAACT
GCACGCGGCCGCTGCGGCAGTCGCCCGCCCATCCATGCCCATGAAGCGAT
CGCCGATGGCAGCGCACGGAGGCAGCGTGTTTCATGGCGCATGGTACAGA
CGGGACGGCGGGACTTGGGCGTGTGCGCGGCAGCCCCTGCGTCGAGGGGC
TGCGCGCGCGCTGCTAGCGGTAACAGCGGCAGTTCTCAGGAGCGTCTAAA
TACAGTCACCTGCAGCCCCCCCCCTCCCCCCCCCCCACTTCTCCTAAACC
CCCAGGAAGTTGTTGCGCATAGCACTTCGCGCCCAAGAGCTGTTCGCACA
ATGGCACCTCATCTGTGCGCAGCTCGTGGGCGCAGGCCCCACGCGCACGC
GCGCAAAACGCGCGCCGCAGATTCTGTGATATGCGGCGCGCGGCAGCAGC
AGCGCGCACGGCAGCAGCAGCAGCGCCCGCGGCAGCAGCAGCGCCCGCGC
CAGCGGCGGCGCTTCGGCCGCCCTCTCGGGCACAGTAATACTGAAAAGAC
AATCCGAAAGGCAATGACGACTCGCTCACAAGACTGGAAGTGGAAGGCAG
CACCCGGCATGGGTGGGGGCTGCACTTGCTGCACGCGCCACCTGCCGCGC
AATGGCGCGGCGGCGGCGACGGTGGC
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Coding sequence (CDS) from alignment at Contig_25:365429..367954-

>mRNA_6638 ID=mRNA_6638|Name=jgi.p|Trimin1|348474|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=186bp|location=Sequence derived from alignment at Contig_25:365429..367954- (Tribonema minus UTEX_B_3156 )
ATGAGGCCGGGGCGCGCAGCGCGGCCGCAGGTGCCTGCGCTGCGCATCGC
CCAGCGCACGTGCGAGAGATTCTGTGATATGCGGCGCGCGGCAGCAGCAG
CGCGCACGGCAGCAGCAGCAGCGCCCGCGGCAGCAGCAGCGCCCGCGCCA
GCGGCGGCGCTTCGGCCGCCCTCTCGGGCACAGTAA
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