mRNA_6583 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|138552
Unique NamemRNA_6583
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|138552 vs. uniprot
Match: A0A835YQL2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQL2_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 8.410e-5
Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 1 
Query:    1 CPHGRRSCRCKECGGASVC 57
            CPHGRRSCRCKECGGASVC
Sbjct:    1 CPHGRRSCRCKECGGASVC 19
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138552 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YQL2_9STRA8.410e-5100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_62contigContig_62:734184..734558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|138552|gw1.62.84.1
Hectar predicted targeting categoryother localisation
TranscriptId138874
TrackFilteredModels1
ProteinId138552
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138552gene_6583Tribonema minus UTEX_B_3156 geneContig_62 734184..734558 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6583_1exon_6583_1Tribonema minus UTEX_B_3156 exonContig_62 734184..734558 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6583CDS_6583Tribonema minus UTEX_B_3156 CDSContig_62 734184..734558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138552Trimin1|138552|gw1.62.84.1Tribonema minus UTEX_B_3156 polypeptideContig_62 734184..734558 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6583 ID=mRNA_6583|Name=jgi.p|Trimin1|138552|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=375bp|location=Sequence derived from alignment at Contig_62:734184..734558- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCCCCCACGGCCGCCGGAGCTGCAGATGCAAGGAATGCGGCGGTGCCAG
CGTCTGCGAGCACGGCCGCCAGCGCTGCGCTTGCAAGGAGTGCGGTGGCT
CTGCCTTCTGCGAGCACGGACGCAGACGTGAACGCTGCAAGGAGTGCGGC
GGCGCCGCCATCTGCGAACACGGCCGCCAGCGCGTACAGTGCCAGCAGTG
CAATGGTTCCAGCATCTGTGAGCACGGCCGCCAGCGCGGCACTTGCAAGG
AGTGTGGCGGATCGGCCTTCTGCGAGCACGGCCGCCGGCGCAGCACTTGC
AAGGAATGTGGCGGATCGGCCTTCTGCGAGCACGGCCGCTGGCGCTATCA
CTGCAAGCCGTGCGGCGGCCCCGGG
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protein sequence of jgi.p|Trimin1|138552

>Trimin1|138552|gw1.62.84.1 ID=Trimin1|138552|gw1.62.84.1|Name=jgi.p|Trimin1|138552|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=125bp
CPHGRRSCRCKECGGASVCEHGRQRCACKECGGSAFCEHGRRRERCKECG
GAAICEHGRQRVQCQQCNGSSICEHGRQRGTCKECGGSAFCEHGRRRSTC
KECGGSAFCEHGRWRYHCKPCGGPG
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mRNA from alignment at Contig_62:734184..734558-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6583 ID=mRNA_6583|Name=jgi.p|Trimin1|138552|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=375bp|location=Sequence derived from alignment at Contig_62:734184..734558- (Tribonema minus UTEX_B_3156 )
TGCCCCCACGGCCGCCGGAGCTGCAGATGCAAGGAATGCGGCGGTGCCAG
CGTCTGCGAGCACGGCCGCCAGCGCTGCGCTTGCAAGGAGTGCGGTGGCT
CTGCCTTCTGCGAGCACGGACGCAGACGTGAACGCTGCAAGGAGTGCGGC
GGCGCCGCCATCTGCGAACACGGCCGCCAGCGCGTACAGTGCCAGCAGTG
CAATGGTTCCAGCATCTGTGAGCACGGCCGCCAGCGCGGCACTTGCAAGG
AGTGTGGCGGATCGGCCTTCTGCGAGCACGGCCGCCGGCGCAGCACTTGC
AAGGAATGTGGCGGATCGGCCTTCTGCGAGCACGGCCGCTGGCGCTATCA
CTGCAAGCCGTGCGGCGGCCCCGGG
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Coding sequence (CDS) from alignment at Contig_62:734184..734558-

>mRNA_6583 ID=mRNA_6583|Name=jgi.p|Trimin1|138552|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=375bp|location=Sequence derived from alignment at Contig_62:734184..734558- (Tribonema minus UTEX_B_3156 )
TGCCCCCACGGCCGCCGGAGCTGCAGATGCAAGGAATGCGGCGGTGCCAG
CGTCTGCGAGCACGGCCGCCAGCGCTGCGCTTGCAAGGAGTGCGGTGGCT
CTGCCTTCTGCGAGCACGGACGCAGACGTGAACGCTGCAAGGAGTGCGGC
GGCGCCGCCATCTGCGAACACGGCCGCCAGCGCGTACAGTGCCAGCAGTG
CAATGGTTCCAGCATCTGTGAGCACGGCCGCCAGCGCGGCACTTGCAAGG
AGTGTGGCGGATCGGCCTTCTGCGAGCACGGCCGCCGGCGCAGCACTTGC
AAGGAATGTGGCGGATCGGCCTTCTGCGAGCACGGCCGCTGGCGCTATCA
CTGCAAGCCGTGCGGCGGCCCCGGG
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