mRNA_6581 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|146591
Unique NamemRNA_6581
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|146591 vs. uniprot
Match: A0A835YRB7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRB7_9STRA)

HSP 1 Score: 324 bits (831), Expect = 3.260e-112
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 1
Query:    1 IDHKTFERALYKATDSRSALKSTLQCYMKIMTKLKAGFTVLSCILLAVVCAIVLGVDFVKASPTWLTLVLAFGFCFGDTVRRLFEGLVLVFVWHPFGVADRVFINDDNNMEMNFVVSKINLLNTEFIRSDGQLCILSNSVIQQRDVRNASRAEFNCTVFCLKLRA 495
            IDHKTFERALYKATDSRSALKSTLQCYMKIMTKLKAGFTVLSCILLAVVCAIVLGVDFVKASPTWLTLVLAFGFCFGDTVRRLFEGLVLVFVWHPFGVADRVFINDDNNMEMNFVVSKINLLNTEFIRSDGQLCILSNSVIQQRDVRNASRAEFNCTVFCLKLRA
Sbjct:    1 IDHKTFERALYKATDSRSALKSTLQCYMKIMTKLKAGFTVLSCILLAVVCAIVLGVDFVKASPTWLTLVLAFGFCFGDTVRRLFEGLVLVFVWHPFGVADRVFINDDNNMEMNFVVSKINLLNTEFIRSDGQLCILSNSVIQQRDVRNASRAEFNCTVFCLKLRA 165          
BLAST of jgi.p|Trimin1|146591 vs. uniprot
Match: A0A835ZCG5_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCG5_9STRA)

HSP 1 Score: 240 bits (612), Expect = 5.400e-79
Identity = 118/154 (76.62%), Postives = 137/154 (88.96%), Query Frame = 1
Query:    1 IDHKTFERALYKATDSRSALKSTLQCYMKIMTKLKAGFTVLSCILLAVVCAIVLGVDFVKASPTWLTLVLAFGFCFGDTVRRLFEGLVLVFVWHPFGVADRVFINDDNNMEMNFVVSKINLLNTEFIRSDGQLCILSNSVIQQRDVRNASRAEF 462
            IDHK FE+ALYKATDSR+ALK TL  YM+IM KL+ G  VLSCI++ +VC I+L V+FV+A  TWLTL LAF FCFGDTV+RLFEGLVLVFVW+P+G++DRVFINDDN +EMN VV+KINLLNTEFIRSDGQLCI+SNS+IQQRDVRNASRAEF
Sbjct:    1 IDHKRFEKALYKATDSRTALKRTLHDYMRIMGKLEVGLGVLSCIVMGLVCGIILDVNFVQAGTTWLTLALAFSFCFGDTVKRLFEGLVLVFVWNPYGISDRVFINDDNKVEMNLVVTKINLLNTEFIRSDGQLCIISNSIIQQRDVRNASRAEF 154          
BLAST of jgi.p|Trimin1|146591 vs. uniprot
Match: A0A835YYX4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYX4_9STRA)

HSP 1 Score: 252 bits (643), Expect = 4.090e-77
Identity = 125/165 (75.76%), Postives = 144/165 (87.27%), Query Frame = 1
Query:    1 IDHKTFERALYKATDSRSALKSTLQCYMKIMTKLKAGFTVLSCILLAVVCAIVLGVDFVKASPTWLTLVLAFGFCFGDTVRRLFEGLVLVFVWHPFGVADRVFINDDNNMEMNFVVSKINLLNTEFIRSDGQLCILSNSVIQQRDVRNASRAEFNCTVFCLKLRA 495
            IDHK FE+ALYKATDSR+ALK TL  YM+IM KL+ G  VLSCI++ +VC I+L V+FV+A  TWLTL LAF FCFGDTV+RLFEGLVLVFVW+P+G++DRVFINDD  +EMN VV+KINLLNTEFIRSDGQLCI+SNS+IQQRDVRNASRAEFNCTVF  KL A
Sbjct:   62 IDHKRFEKALYKATDSRTALKRTLHDYMRIMGKLEVGLGVLSCIVMGLVCGIILDVNFVQAGTTWLTLALAFSFCFGDTVKRLFEGLVLVFVWNPYGISDRVFINDDYKVEMNLVVTKINLLNTEFIRSDGQLCIISNSIIQQRDVRNASRAEFNCTVFFAKLHA 226          
BLAST of jgi.p|Trimin1|146591 vs. uniprot
Match: A0A2T9ZHK6_9FUNG (Uncharacterized protein n=1 Tax=Smittium megazygosporum TaxID=133381 RepID=A0A2T9ZHK6_9FUNG)

HSP 1 Score: 68.9 bits (167), Expect = 1.260e-10
Identity = 41/154 (26.62%), Postives = 81/154 (52.60%), Query Frame = 1
Query:   16 FERALYKATDSRSALKSTLQCYMKIMTKLKAGFTVLSCILLAVVCAIVLGVDFVKASPTWLTLVLAFGFCFGDTVRRLFEGLVLVFVWHPFGVADRVFINDDNNMEMNFVVSKINLLNTEFIRSDGQLCILSNSVIQQRDVRNASRAEFNCTVF 477
            F+  L +    R+ +  TL     ++  +   F ++  +++ V+  ++  VD +K+  +  TL++A+ F FG++++  F+  + +   HP+ + D V I D +     F V +INLL+T F+RSDG+  I  NS +    + N  R++    +F
Sbjct:  179 FQDCLIEFYFERTIIDKTLTSMSMVLKDIDKFFMLIVLMIVFVLGLMLTSVDPIKSLGSLATLMVAWSFVFGNSLKTCFDCFIFLITTHPYDIGDHVLIGDKD-----FTVKRINLLSTTFVRSDGRYTIFPNSFLATSQIINYRRSKNQSELF 327          
BLAST of jgi.p|Trimin1|146591 vs. uniprot
Match: A0A1X2G2G7_9FUNG (EF-hand domain-containing protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2G2G7_9FUNG)

HSP 1 Score: 68.2 bits (165), Expect = 2.770e-10
Identity = 37/90 (41.11%), Postives = 49/90 (54.44%), Query Frame = 1
Query:  187 PTWLTLVLAFGFCFGDTVRRLFEGLVLVFVWHPFGVADRVFINDDNNMEMNFVVSKINLLNTEFIRSDGQLCILSNSVIQQRDVRNASRA 456
            P W T  +A  F FG+T +  F+ ++ VFV HPF   DRVFI  DN     F V  + LL T FI+ DG +  + NSV+    + N  RA
Sbjct:  634 PLW-TAFIAASFIFGNTAKETFDSVIFVFVTHPFDAGDRVFIGTDN-----FTVDNVGLLVTTFIKWDGSVVYVKNSVLSTHYIINVRRA 717          
BLAST of jgi.p|Trimin1|146591 vs. uniprot
Match: K8EFR1_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EFR1_9CHLO)

HSP 1 Score: 67.4 bits (163), Expect = 5.040e-10
Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = 1
Query:  193 WLTL---VLAFGFCFGDTVRRLFEGLVLVFVWHPFGVADRVFINDDNNMEMNFVVSKINLLNTEFIRSDGQLCILSNSVIQQRDVRNASRAE 459
            WLTL   +LAF F FG+++R  FEG++ +F+ HP+ V D + IN +      FV+  IN+L TE    +G++    N  + +  V N SR++
Sbjct:  601 WLTLSSFILAFAFMFGNSIRECFEGVIFIFITHPYDVGDNILINGNR-----FVIKNINILQTEAENWNGEVTYYHNQTMMRSTVINMSRSK 687          
BLAST of jgi.p|Trimin1|146591 vs. uniprot
Match: A0A2P6TJX5_CHLSO (Mechanosensitive ion channel 10 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TJX5_CHLSO)

HSP 1 Score: 67.0 bits (162), Expect = 7.150e-10
Identity = 45/144 (31.25%), Postives = 76/144 (52.78%), Query Frame = 1
Query:   25 ALYKATDSRSALKSTLQCYMKIMTKLKAGFTVLSCILLAVVCAIVLGVDFVKASPTWLTLVLAFGFCFGDTVRRLFEGLVLVFVWHPFGVADRVFINDDNNMEMNFVVSKINLLNTEFIRSDGQLCILSNSVIQQRDVRNASRA 456
            ++ K    R+ L  TL+    ++ KL+     +  +L       + GVD  KA  T+ +++LAF F FG+++R +FE +V +F  HP+ V D + I  +N+      V++I LLNT  +R+DG      NS +    + N SR+
Sbjct:  885 SVLKIYQERAFLACTLRDTKSVIGKLERLLGAIIHVLFGFFYLYIFGVDVTKAWLTFSSVILAFTFIFGNSIRTVFECVVWLFSVHPYDVGDTLVIGGENHR-----VAEIALLNTTLVRADGARIYRPNSRLNNESLFNLSRS 1023          
BLAST of jgi.p|Trimin1|146591 vs. uniprot
Match: A0A166A5F5_DAUCS (Mechanosensitive ion channel protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A166A5F5_DAUCS)

HSP 1 Score: 66.6 bits (161), Expect = 9.250e-10
Identity = 45/156 (28.85%), Postives = 78/156 (50.00%), Query Frame = 1
Query:    1 IDHKTFERALYKATDSRSALKSTLQCYMKIMTKLKAGFTVLSCILLAVVCAIVLGVD----FVKASPTWLTLVLAFGFCFGDTVRRLFEGLVLVFVWHPFGVADRVFINDDNNMEMNFVVSKINLLNTEFIRSDGQLCILSNSVIQQRDVRNASRA 456
            I  K  +  +      R AL  +L    K + KL     +   +++ ++ +++L V     FV  S  +L +V    F FG+T + +FEG++ +FV HPF + DR  ++D     +  VV ++N+L T F+R D Q     NSV+  + + N  R+
Sbjct:  498 ISRKELKNWMVNTFKERRALVLSLNDTKKAVNKLHQMLNIFVGLIILIIWSLILKVASTQFFVLLSSQFLLVV----FVFGNTCKTMFEGIIFLFVMHPFDIGDRCEVDD-----VQLVVEEMNILTTTFLRYDNQKICYPNSVLSNKPISNYYRS 644          
BLAST of jgi.p|Trimin1|146591 vs. uniprot
Match: A0A8H7PGE9_9FUNG (EF-hand domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PGE9_9FUNG)

HSP 1 Score: 65.9 bits (159), Expect = 1.740e-9
Identity = 40/153 (26.14%), Postives = 76/153 (49.67%), Query Frame = 1
Query:    1 IDHKTFERALYKATDSRSALKSTLQCYMKIMTKLKAGFTVLSCILLAVVCAIVLGVDF-VKASPTWLTLVLAFGFCFGDTVRRLFEGLVLVFVWHPFGVADRVFINDDNNMEMNFVVSKINLLNTEFIRSDGQLCILSNSVIQQRDVRNASRA 456
            I  +       +    R  L ++++   +   KL      ++ I+ AV+     G++      P W T+ +A  F FG++ + +FE ++ +FV HP+ + DRVFI  +N     + V  + LL T F++ DG +  + NS++  + + N SR+
Sbjct:  559 ISRRELRNGCIRIYKERKLLSASMRDLSQASGKLDVILLTIAAIIWAVIVCSCFGINVGTSLMPLW-TMFVAVSFIFGNSAKDMFESIIFIFVTHPYDIGDRVFIGTEN-----WQVKSMGLLITTFLKWDGTIVYVKNSILAPQYIFNVSRS 705          
BLAST of jgi.p|Trimin1|146591 vs. uniprot
Match: A0A8H7ETW4_9FUNG (EF-hand domain-containing protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7ETW4_9FUNG)

HSP 1 Score: 65.1 bits (157), Expect = 3.220e-9
Identity = 35/93 (37.63%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  175 VKASPTWLTLVLAFGFCFGDTVRRLFEGLVLVFVWHPFGVADRVFINDDNNMEMNFVVSKINLLNTEFIRSDGQLCILSNSVIQQRDVRNASR 453
            V+  P W   + A  F FG++ +  FE ++ VFV HPF   DRVFI+ +N     ++V K+ LL T FI+ DG +    NSV+  + + N  R
Sbjct:  626 VELMPLWSAFIAA-SFVFGNSAKDAFESIIFVFVTHPFDAGDRVFIDSNN-----WIVHKVGLLVTTFIKWDGSVVYAKNSVLATQYIINCRR 712          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|146591 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRB7_9STRA3.260e-112100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZCG5_9STRA5.400e-7976.62Uncharacterized protein (Fragment) n=2 Tax=Tribone... [more]
A0A835YYX4_9STRA4.090e-7775.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2T9ZHK6_9FUNG1.260e-1026.62Uncharacterized protein n=1 Tax=Smittium megazygos... [more]
A0A1X2G2G7_9FUNG2.770e-1041.11EF-hand domain-containing protein n=1 Tax=Hesselti... [more]
K8EFR1_9CHLO5.040e-1036.96Uncharacterized protein n=1 Tax=Bathycoccus prasin... [more]
A0A2P6TJX5_CHLSO7.150e-1031.25Mechanosensitive ion channel 10 n=1 Tax=Chlorella ... [more]
A0A166A5F5_DAUCS9.250e-1028.85Mechanosensitive ion channel protein n=1 Tax=Daucu... [more]
A0A8H7PGE9_9FUNG1.740e-926.14EF-hand domain-containing protein n=1 Tax=Umbelops... [more]
A0A8H7ETW4_9FUNG3.220e-937.63EF-hand domain-containing protein n=1 Tax=Apophyso... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_62contigContig_62:729610..730104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|146591|gw1.62.142.1
KEGG TC1.A.23.4
BRITEko00000,ko02000
KEGG koko:K22048
GOsGO:0003674,GO:0005215,GO:0005216,GO:0005261,GO:0005262,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006884,GO:0008150,GO:0008324,GO:0008361,GO:0008381,GO:0009987,GO:0012505,GO:0015075,GO:0015085,GO:0015267,GO:0015275,GO:0015318,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0031224,GO:0032535,GO:0034220,GO:0042592,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046873,GO:0048471,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0071840,GO:0072503,GO:0072507,GO:0072511,GO:0090066,GO:0097038,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0140135
Descriptionmechanosensitive ion channel activity
COG categoryM
Max annot lvl33154|Opisthokonta
EggNOG OGsCOG0668@1|root,KOG4629@2759|Eukaryota,38H8F@33154|Opisthokonta
Evalue6.9e-18
Seed ortholog192875.XP_004363719.1
Hectar predicted targeting categorysignal anchor
TranscriptId146913
TrackFilteredModels1
ProteinId146591
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146591gene_6581Tribonema minus UTEX_B_3156 geneContig_62 729610..730104 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6581_1exon_6581_1Tribonema minus UTEX_B_3156 exonContig_62 729610..730104 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6581CDS_6581Tribonema minus UTEX_B_3156 CDSContig_62 729610..730104 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146591Trimin1|146591|gw1.62.142.1Tribonema minus UTEX_B_3156 polypeptideContig_62 729610..730104 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6581 ID=mRNA_6581|Name=jgi.p|Trimin1|146591|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=495bp|location=Sequence derived from alignment at Contig_62:729610..730104- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATTGACCACAAGACGTTCGAGAGGGCGTTGTACAAGGCCACCGACAGCCG
AAGCGCTCTGAAAAGTACGCTGCAGTGTTACATGAAGATTATGACCAAAC
TCAAAGCCGGATTCACTGTACTGTCGTGCATATTGTTAGCCGTAGTGTGC
GCCATTGTCCTTGGAGTTGACTTCGTGAAGGCGAGCCCGACGTGGCTCAC
GCTAGTGCTGGCGTTCGGTTTCTGTTTCGGCGACACAGTGAGAAGGCTCT
TTGAGGGTCTCGTTCTCGTCTTCGTGTGGCACCCTTTCGGCGTGGCAGAC
AGAGTGTTCATCAATGACGACAACAATATGGAGATGAATTTTGTGGTGAG
CAAGATCAATTTGCTAAACACGGAGTTCATTCGCAGCGACGGCCAACTGT
GCATACTATCCAACAGCGTCATACAGCAGAGAGACGTGAGGAACGCGAGC
AGAGCCGAATTCAACTGCACTGTTTTCTGCTTAAAACTTCGTGCA
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protein sequence of jgi.p|Trimin1|146591

>Trimin1|146591|gw1.62.142.1 ID=Trimin1|146591|gw1.62.142.1|Name=jgi.p|Trimin1|146591|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=165bp
IDHKTFERALYKATDSRSALKSTLQCYMKIMTKLKAGFTVLSCILLAVVC
AIVLGVDFVKASPTWLTLVLAFGFCFGDTVRRLFEGLVLVFVWHPFGVAD
RVFINDDNNMEMNFVVSKINLLNTEFIRSDGQLCILSNSVIQQRDVRNAS
RAEFNCTVFCLKLRA
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mRNA from alignment at Contig_62:729610..730104-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6581 ID=mRNA_6581|Name=jgi.p|Trimin1|146591|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=495bp|location=Sequence derived from alignment at Contig_62:729610..730104- (Tribonema minus UTEX_B_3156 )
ATTGACCACAAGACGTTCGAGAGGGCGTTGTACAAGGCCACCGACAGCCG AAGCGCTCTGAAAAGTACGCTGCAGTGTTACATGAAGATTATGACCAAAC TCAAAGCCGGATTCACTGTACTGTCGTGCATATTGTTAGCCGTAGTGTGC GCCATTGTCCTTGGAGTTGACTTCGTGAAGGCGAGCCCGACGTGGCTCAC GCTAGTGCTGGCGTTCGGTTTCTGTTTCGGCGACACAGTGAGAAGGCTCT TTGAGGGTCTCGTTCTCGTCTTCGTGTGGCACCCTTTCGGCGTGGCAGAC AGAGTGTTCATCAATGACGACAACAATATGGAGATGAATTTTGTGGTGAG CAAGATCAATTTGCTAAACACGGAGTTCATTCGCAGCGACGGCCAACTGT GCATACTATCCAACAGCGTCATACAGCAGAGAGACGTGAGGAACGCGAGC AGAGCCGAATTCAACTGCACTGTTTTCTGCTTAAAACTTCGTGCA
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Coding sequence (CDS) from alignment at Contig_62:729610..730104-

>mRNA_6581 ID=mRNA_6581|Name=jgi.p|Trimin1|146591|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=495bp|location=Sequence derived from alignment at Contig_62:729610..730104- (Tribonema minus UTEX_B_3156 )
ATTGACCACAAGACGTTCGAGAGGGCGTTGTACAAGGCCACCGACAGCCG
AAGCGCTCTGAAAAGTACGCTGCAGTGTTACATGAAGATTATGACCAAAC
TCAAAGCCGGATTCACTGTACTGTCGTGCATATTGTTAGCCGTAGTGTGC
GCCATTGTCCTTGGAGTTGACTTCGTGAAGGCGAGCCCGACGTGGCTCAC
GCTAGTGCTGGCGTTCGGTTTCTGTTTCGGCGACACAGTGAGAAGGCTCT
TTGAGGGTCTCGTTCTCGTCTTCGTGTGGCACCCTTTCGGCGTGGCAGAC
AGAGTGTTCATCAATGACGACAACAATATGGAGATGAATTTTGTGGTGAG
CAAGATCAATTTGCTAAACACGGAGTTCATTCGCAGCGACGGCCAACTGT
GCATACTATCCAACAGCGTCATACAGCAGAGAGACGTGAGGAACGCGAGC
AGAGCCGAATTCAACTGCACTGTTTTCTGCTTAAAACTTCGTGCA
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