mRNA_6576 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154776
Unique NamemRNA_6576
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|154776 vs. uniprot
Match: A0A835YMZ3_9STRA (Lipase_3 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMZ3_9STRA)

HSP 1 Score: 161 bits (408), Expect = 1.890e-50
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:    1 TAAKYSPGRAHAGFHMQQRRLLRLCIDELHERLSQPHAVLLCVGHSAGACVAALTALQLVQCYGDAISFIGFGMPRLGD 237
            TAAKYSPGRAHAGFHMQQRRLLRLCIDELHERLSQPHAVLLCVGHSAGACVAALTALQLVQCYGDAISFIGFGMPRLGD
Sbjct:    1 TAAKYSPGRAHAGFHMQQRRLLRLCIDELHERLSQPHAVLLCVGHSAGACVAALTALQLVQCYGDAISFIGFGMPRLGD 79
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154776 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YMZ3_9STRA1.890e-50100.00Lipase_3 domain-containing protein (Fragment) n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_62contigContig_62:706418..706654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154776|gw1.62.204.1
Hectar predicted targeting categoryother localisation
TranscriptId155098
TrackFilteredModels1
ProteinId154776
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154776gene_6576Tribonema minus UTEX_B_3156 geneContig_62 706418..706654 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6576_1exon_6576_1Tribonema minus UTEX_B_3156 exonContig_62 706418..706654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6576CDS_6576Tribonema minus UTEX_B_3156 CDSContig_62 706418..706654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154776Trimin1|154776|gw1.62.204.1Tribonema minus UTEX_B_3156 polypeptideContig_62 706418..706654 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6576 ID=mRNA_6576|Name=jgi.p|Trimin1|154776|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=237bp|location=Sequence derived from alignment at Contig_62:706418..706654+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACCGCCGCCAAGTACAGCCCTGGCAGAGCCCATGCGGGCTTTCACATGCA
ACAGCGACGACTGCTGCGGTTGTGCATTGACGAGCTTCACGAACGCCTCT
CCCAGCCGCACGCGGTGCTACTATGCGTCGGTCATTCTGCTGGTGCCTGC
GTCGCCGCTCTCACCGCATTGCAGCTCGTTCAATGTTATGGAGATGCAAT
TTCTTTTATCGGCTTTGGCATGCCCCGGCTCGGTGAC
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protein sequence of jgi.p|Trimin1|154776

>Trimin1|154776|gw1.62.204.1 ID=Trimin1|154776|gw1.62.204.1|Name=jgi.p|Trimin1|154776|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=79bp
TAAKYSPGRAHAGFHMQQRRLLRLCIDELHERLSQPHAVLLCVGHSAGAC
VAALTALQLVQCYGDAISFIGFGMPRLGD
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mRNA from alignment at Contig_62:706418..706654+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6576 ID=mRNA_6576|Name=jgi.p|Trimin1|154776|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=237bp|location=Sequence derived from alignment at Contig_62:706418..706654+ (Tribonema minus UTEX_B_3156 )
ACCGCCGCCAAGTACAGCCCTGGCAGAGCCCATGCGGGCTTTCACATGCA
ACAGCGACGACTGCTGCGGTTGTGCATTGACGAGCTTCACGAACGCCTCT
CCCAGCCGCACGCGGTGCTACTATGCGTCGGTCATTCTGCTGGTGCCTGC
GTCGCCGCTCTCACCGCATTGCAGCTCGTTCAATGTTATGGAGATGCAAT
TTCTTTTATCGGCTTTGGCATGCCCCGGCTCGGTGAC
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Coding sequence (CDS) from alignment at Contig_62:706418..706654+

>mRNA_6576 ID=mRNA_6576|Name=jgi.p|Trimin1|154776|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=237bp|location=Sequence derived from alignment at Contig_62:706418..706654+ (Tribonema minus UTEX_B_3156 )
ACCGCCGCCAAGTACAGCCCTGGCAGAGCCCATGCGGGCTTTCACATGCA
ACAGCGACGACTGCTGCGGTTGTGCATTGACGAGCTTCACGAACGCCTCT
CCCAGCCGCACGCGGTGCTACTATGCGTCGGTCATTCTGCTGGTGCCTGC
GTCGCCGCTCTCACCGCATTGCAGCTCGTTCAATGTTATGGAGATGCAAT
TTCTTTTATCGGCTTTGGCATGCCCCGGCTCGGTGAC
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