mRNA_6540 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|153086
Unique NamemRNA_6540
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|153086 vs. uniprot
Match: A0A836CBI4_9STRA (PA domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI4_9STRA)

HSP 1 Score: 399 bits (1025), Expect = 1.050e-140
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1
Query:    1 VQGIHGNAPLQPLPTPRDPAVRYADFGGAPIVGLHAHAERMARGPTVTLDAARERVHVADDRGPLAIALGGADVPVWAGHFSPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADDGSCTHAGGFSQFCMPGSSPPDGWAREDSEGPWREVRIPHVLMLKEHAAVLLAA 594
            VQGIHGNAPLQPLPTPRDPAVRYADFGGAPIVGLHAHAERMARGPTVTLDAARERVHVADDRGPLAIALGGADVPVWAGHFSPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADDGSCTHAGGFSQFCMPGSSPPDGWAREDSEGPWREVRIPHVLMLKEHAAVLLAA
Sbjct:    1 VQGIHGNAPLQPLPTPRDPAVRYADFGGAPIVGLHAHAERMARGPTVTLDAARERVHVADDRGPLAIALGGADVPVWAGHFSPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADDGSCTHAGGFSQFCMPGSSPPDGWAREDSEGPWREVRIPHVLMLKEHAAVLLAA 198          
BLAST of jgi.p|Trimin1|153086 vs. uniprot
Match: D8LI37_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI37_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 4.780e-41
Identity = 88/198 (44.44%), Postives = 110/198 (55.56%), Query Frame = 1
Query:    1 VQGIHGNAPLQPLPTPRDPAVRYADFGGAPIVGLHAHAERMARGPTVTLDAARERVHVADDRGPLAIALGGADVPVWAGHFSPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADDGSCTHAGGFSQFCMPGSSPPDGWAREDSEGPWREVRIPHVLMLKEHAAVLLAA 594
            + G H       LP   D +V YA     P        ER   GPTV LD    ++ VA +           D+ VW  HFSPR+  V +E++ A P DA + EL N  FVR RI +V RG +P+VHKV+AAQRA AL V++ADDG C   G F Q C+ GS PP+GWA  D   PW +VR+P VLML+E A  L AA
Sbjct:    1 MSGFHAGHEHLRLPNVTDVSVTYAGETEPPPGAGFDPFEREVHGPTVVLDDRASKIRVASNNSAFE------DIDVWTCHFSPRSFKVKSEVVVAQPADARS-ELENGRFVRNRIVVVQRGDIPIVHKVLAAQRAGALGVIVADDGRC--GGSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAERLTAA 189          
BLAST of jgi.p|Trimin1|153086 vs. uniprot
Match: A0A024TF71_9STRA (Fibronectin type-III domain-containing protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TF71_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 6.050e-19
Identity = 63/129 (48.84%), Postives = 77/129 (59.69%), Query Frame = 1
Query:  226 VWAGHFSPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIAD-DGSCTHAGG----FSQFCMPGSSPP--DGWAREDSEGPWREVRIPHVLMLKEHAAVLLA 591
            VW GHFSP+T+ V AE++ A P  A  P L N   VR RIALV RG +PL +KV+ AQ A ALAVVI D DG C    G    F   C  GS+    +G+  +D    W  +RIPHVL+L+  AA LLA
Sbjct:  749 VWPGHFSPKTYSVVAEIVAASPVLADRP-LEN--DVRDRIALVRRGKLPLFNKVLHAQNAGALAVVIVDADGLCDDDSGTGGTFDHHCSVGSNHAFGEGFGAQDDAAVWSAIRIPHVLLLRGDAAALLA 874          
BLAST of jgi.p|Trimin1|153086 vs. uniprot
Match: A0A7S1XPP5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPP5_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.060e-18
Identity = 74/206 (35.92%), Postives = 98/206 (47.57%), Query Frame = 1
Query:   22 APLQPLPTPR-DPAVRYADFGGAPIVGLHAHAERMAR------GPTVTLDAARERVHVADDRGPLAIALGG-----ADVPVWAGHFSPRTHLVTAELIPADPPDAAAPE--LRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADDGSCTHAGGFSQFCMPGS----SPPDGWAREDSEGPWREVRIPHVLMLKEHAAVL 585
            A L+ +  P+  P     D G AP+  LH H     R         +T +A    +    D     +  GG       + VWA  +SP +  V A+L  A+P  A   E    + S V  R+ LV RG  PLV KV+ AQ+A AL V+I DDG C     F Q C+PGS    S   G+A +D  G WR+VRIP VL+L +   VL
Sbjct:  656 AALETVKAPKFRPGAGSIDSGDAPV--LHGHGSGAHRIHDAHKTGNMTAEATTGAIVNLHDHAHSLLVDGGDGGTNLQLAVWAAAWSPASFSVRAQLAMAEPATACRAEGGAGHPSVVHHRVLLVERGGCPLVQKVLTAQKAGALGVIIVDDGRCEK---FDQHCVPGSDKVLSEGQGFAAQDHPGDWRKVRIPAVLVLADDGEVL 856          
BLAST of jgi.p|Trimin1|153086 vs. uniprot
Match: A0A6G0WVY2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WVY2_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.120e-16
Identity = 54/123 (43.90%), Postives = 74/123 (60.16%), Query Frame = 1
Query:  226 VWAGHFSPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADDGSCTHAGGFSQFCMPGSSPP--DGWAREDSEGPWREVRIPHVLMLKEHAAVLL 588
            VWAGHFS   + V AE++ ADP  A  P L+N   VR RIA++ RG +P+ +KV+ AQ A ALAVV+ D  +   A  F   C+PGS+    +G+   DS   W ++ IPHVL+  +   VLL
Sbjct:  693 VWAGHFSTNKYNVVAEMVLADPVYADGP-LKNEIDVRDRIAVILRGKLPIFNKVLHAQTAGALAVVLIDTRNQCEA--FDHHCIPGSNAAYGEGFGALDSAVVWEKINIPHVLVRYDDGLVLL 812          
BLAST of jgi.p|Trimin1|153086 vs. uniprot
Match: A0A835Z4S0_9STRA (PA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4S0_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.010e-9
Identity = 42/125 (33.60%), Postives = 64/125 (51.20%), Query Frame = 1
Query:  205 LGGADVPVWAGHFSPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADDGSCTHAGGFSQFCMPGSSPPDGWAREDSEGPWREVRIPHVLMLKEHAA 579
            L G+ VP        R    T ++I A P D +A EL N   V G IAL+ RG +PL+ KV+  Q A A+  ++ D+G C+    F +    G  P  G+A  D    W +V+IP +L+ ++  +
Sbjct:   55 LEGSHVPALRAAHGQRAFNATGDIIYAVPNDGSA-ELLNPDEVAGHIALLDRGTIPLIEKVLKVQAAGAVGALLVDNGECSE--DFMRCGRTGGVPEGGFAWRDQPYDWSKVKIPALLVSEKEGS 176          
BLAST of jgi.p|Trimin1|153086 vs. uniprot
Match: A0A8J2SH82_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SH82_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 8.750e-9
Identity = 42/107 (39.25%), Postives = 61/107 (57.01%), Query Frame = 1
Query:  250 RTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADDGSCTHAGGFSQFCMPGSSPPDGWAREDSEGPWREVRIPHVLMLKE 570
            R + +T++L+ A P DA+   + NA  + G +ALV R A PLV K++ AQ A A+ VV+ DDG C       +    GS+   G+A  D    WR V+IP VL+ +E
Sbjct:   76 RDYKITSKLVYALPNDASTKPM-NADELTGNVALVHRSATPLVQKILHAQEAGAVGVVLVDDGRCESDLNCGRI---GSARLGGFAPRDDPSSWRLVKIPSVLVSQE 178          
BLAST of jgi.p|Trimin1|153086 vs. uniprot
Match: A0A5A8DWN8_CAFRO (PA domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DWN8_CAFRO)

HSP 1 Score: 58.9 bits (141), Expect = 4.010e-7
Identity = 44/127 (34.65%), Postives = 65/127 (51.18%), Query Frame = 1
Query:  211 GADVPVWAGHFSPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADD-GSCTHAGGFSQFCMPGSSPPDGWAREDSEGPWREVRIPHVLMLKEHAAVLL 588
            G+   +WA    P +  + AEL+ + P DA+ P +     VRG   LV RG  P++ KV+ AQ A A+AV++ D  G C+ A  F    +  SS   G+A  D    W+ V IP  L+ +  A  L+
Sbjct:   98 GSFATIWAAAHGPPSFDIEAELVYSVPNDASEPLVNP---VRGAAVLVERGGAPIITKVIHAQEAGAVAVIVIDTPGDCSEA--FECGRLGSSSGGTGFAAADPASRWQHVIIPVALVTRGTAQRLV 219          
BLAST of jgi.p|Trimin1|153086 vs. uniprot
Match: A0A7S2WGD9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WGD9_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 4.170e-5
Identity = 33/86 (38.37%), Postives = 46/86 (53.49%), Query Frame = 1
Query:  187 GPLAIALGGADVPVWAGHFSPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADDGSC 444
            G   + LG A          P+ + VT ++  A P       L N+  + G+IA V RG +PLV K++ AQ A A+ VVIADDG+C
Sbjct:   71 GTQVLGLGAAQ--------GPKEYHVTGDMAYAVPNQMQQGALLNSMELSGKIAFVDRGDIPLVEKILLAQDAGAVGVVIADDGNC 148          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153086 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A836CBI4_9STRA1.050e-140100.00PA domain-containing protein (Fragment) n=1 Tax=Tr... [more]
D8LI37_ECTSI4.780e-4144.44PA domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A024TF71_9STRA6.050e-1948.84Fibronectin type-III domain-containing protein n=3... [more]
A0A7S1XPP5_9STRA2.060e-1835.92Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6G0WVY2_9STRA5.120e-1643.90Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A835Z4S0_9STRA1.010e-933.60PA domain-containing protein n=1 Tax=Tribonema min... [more]
A0A8J2SH82_9STRA8.750e-939.25Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A5A8DWN8_CAFRO4.010e-734.65PA domain-containing protein n=3 Tax=Cafeteria roe... [more]
A0A7S2WGD9_9STRA4.170e-538.37Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_62contigContig_62:533782..534375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|153086|gw1.62.192.1
Max annot lvl2759|Eukaryota
EggNOG OGs29K29@1|root,2RTB6@2759|Eukaryota
Evalue7.83e-42
Seed ortholog2880.D8LI37
Hectar predicted targeting categoryother localisation
TranscriptId153408
TrackFilteredModels1
ProteinId153086
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153086gene_6540Tribonema minus UTEX_B_3156 geneContig_62 533782..534375 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6540_1exon_6540_1Tribonema minus UTEX_B_3156 exonContig_62 533782..534375 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6540CDS_6540Tribonema minus UTEX_B_3156 CDSContig_62 533782..534375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153086Trimin1|153086|gw1.62.192.1Tribonema minus UTEX_B_3156 polypeptideContig_62 533782..534375 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6540 ID=mRNA_6540|Name=jgi.p|Trimin1|153086|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=594bp|location=Sequence derived from alignment at Contig_62:533782..534375- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGCAGGGCATCCACGGCAACGCGCCGCTGCAGCCGCTGCCGACGCCGCG
CGACCCGGCCGTCCGTTACGCGGACTTCGGGGGGGCGCCGATCGTGGGCC
TGCACGCGCACGCGGAGCGCATGGCGCGCGGCCCCACCGTGACGCTGGAC
GCGGCGCGCGAGCGCGTGCACGTGGCCGACGACAGGGGGCCCCTGGCCAT
CGCGCTGGGCGGCGCGGACGTGCCCGTGTGGGCGGGGCACTTCTCGCCAC
GCACGCACCTCGTCACCGCGGAGCTCATCCCCGCGGACCCGCCCGACGCC
GCGGCGCCGGAGCTGCGCAACGCGTCGTTCGTGCGCGGCCGCATCGCGCT
CGTGACGCGCGGCGCCGTGCCGCTCGTGCACAAGGTCATGGCGGCGCAGC
GCGCGCGCGCGCTGGCGGTGGTCATTGCGGACGACGGCAGCTGCACGCAC
GCAGGCGGCTTCAGCCAGTTCTGCATGCCCGGGAGCAGCCCCCCGGATGG
CTGGGCGCGGGAGGACAGCGAGGGGCCGTGGCGGGAGGTTCGAATACCGC
ACGTGTTGATGTTGAAGGAGCACGCCGCTGTGCTGCTGGCGGCG
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protein sequence of jgi.p|Trimin1|153086

>Trimin1|153086|gw1.62.192.1 ID=Trimin1|153086|gw1.62.192.1|Name=jgi.p|Trimin1|153086|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=198bp
VQGIHGNAPLQPLPTPRDPAVRYADFGGAPIVGLHAHAERMARGPTVTLD
AARERVHVADDRGPLAIALGGADVPVWAGHFSPRTHLVTAELIPADPPDA
AAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADDGSCTH
AGGFSQFCMPGSSPPDGWAREDSEGPWREVRIPHVLMLKEHAAVLLAA
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mRNA from alignment at Contig_62:533782..534375-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6540 ID=mRNA_6540|Name=jgi.p|Trimin1|153086|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=594bp|location=Sequence derived from alignment at Contig_62:533782..534375- (Tribonema minus UTEX_B_3156 )
GTGCAGGGCATCCACGGCAACGCGCCGCTGCAGCCGCTGCCGACGCCGCG CGACCCGGCCGTCCGTTACGCGGACTTCGGGGGGGCGCCGATCGTGGGCC TGCACGCGCACGCGGAGCGCATGGCGCGCGGCCCCACCGTGACGCTGGAC GCGGCGCGCGAGCGCGTGCACGTGGCCGACGACAGGGGGCCCCTGGCCAT CGCGCTGGGCGGCGCGGACGTGCCCGTGTGGGCGGGGCACTTCTCGCCAC GCACGCACCTCGTCACCGCGGAGCTCATCCCCGCGGACCCGCCCGACGCC GCGGCGCCGGAGCTGCGCAACGCGTCGTTCGTGCGCGGCCGCATCGCGCT CGTGACGCGCGGCGCCGTGCCGCTCGTGCACAAGGTCATGGCGGCGCAGC GCGCGCGCGCGCTGGCGGTGGTCATTGCGGACGACGGCAGCTGCACGCAC GCAGGCGGCTTCAGCCAGTTCTGCATGCCCGGGAGCAGCCCCCCGGATGG CTGGGCGCGGGAGGACAGCGAGGGGCCGTGGCGGGAGGTTCGAATACCGC ACGTGTTGATGTTGAAGGAGCACGCCGCTGTGCTGCTGGCGGCG
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Coding sequence (CDS) from alignment at Contig_62:533782..534375-

>mRNA_6540 ID=mRNA_6540|Name=jgi.p|Trimin1|153086|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=594bp|location=Sequence derived from alignment at Contig_62:533782..534375- (Tribonema minus UTEX_B_3156 )
GTGCAGGGCATCCACGGCAACGCGCCGCTGCAGCCGCTGCCGACGCCGCG
CGACCCGGCCGTCCGTTACGCGGACTTCGGGGGGGCGCCGATCGTGGGCC
TGCACGCGCACGCGGAGCGCATGGCGCGCGGCCCCACCGTGACGCTGGAC
GCGGCGCGCGAGCGCGTGCACGTGGCCGACGACAGGGGGCCCCTGGCCAT
CGCGCTGGGCGGCGCGGACGTGCCCGTGTGGGCGGGGCACTTCTCGCCAC
GCACGCACCTCGTCACCGCGGAGCTCATCCCCGCGGACCCGCCCGACGCC
GCGGCGCCGGAGCTGCGCAACGCGTCGTTCGTGCGCGGCCGCATCGCGCT
CGTGACGCGCGGCGCCGTGCCGCTCGTGCACAAGGTCATGGCGGCGCAGC
GCGCGCGCGCGCTGGCGGTGGTCATTGCGGACGACGGCAGCTGCACGCAC
GCAGGCGGCTTCAGCCAGTTCTGCATGCCCGGGAGCAGCCCCCCGGATGG
CTGGGCGCGGGAGGACAGCGAGGGGCCGTGGCGGGAGGTTCGAATACCGC
ACGTGTTGATGTTGAAGGAGCACGCCGCTGTGCTGCTGGCGGCG
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