mRNA_6540 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|153086 vs. uniprot
Match: A0A836CBI4_9STRA (PA domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI4_9STRA) HSP 1 Score: 399 bits (1025), Expect = 1.050e-140 Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1
Query: 1 VQGIHGNAPLQPLPTPRDPAVRYADFGGAPIVGLHAHAERMARGPTVTLDAARERVHVADDRGPLAIALGGADVPVWAGHFSPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADDGSCTHAGGFSQFCMPGSSPPDGWAREDSEGPWREVRIPHVLMLKEHAAVLLAA 594
VQGIHGNAPLQPLPTPRDPAVRYADFGGAPIVGLHAHAERMARGPTVTLDAARERVHVADDRGPLAIALGGADVPVWAGHFSPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADDGSCTHAGGFSQFCMPGSSPPDGWAREDSEGPWREVRIPHVLMLKEHAAVLLAA
Sbjct: 1 VQGIHGNAPLQPLPTPRDPAVRYADFGGAPIVGLHAHAERMARGPTVTLDAARERVHVADDRGPLAIALGGADVPVWAGHFSPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADDGSCTHAGGFSQFCMPGSSPPDGWAREDSEGPWREVRIPHVLMLKEHAAVLLAA 198
BLAST of jgi.p|Trimin1|153086 vs. uniprot
Match: D8LI37_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI37_ECTSI) HSP 1 Score: 148 bits (373), Expect = 4.780e-41 Identity = 88/198 (44.44%), Postives = 110/198 (55.56%), Query Frame = 1
Query: 1 VQGIHGNAPLQPLPTPRDPAVRYADFGGAPIVGLHAHAERMARGPTVTLDAARERVHVADDRGPLAIALGGADVPVWAGHFSPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADDGSCTHAGGFSQFCMPGSSPPDGWAREDSEGPWREVRIPHVLMLKEHAAVLLAA 594
+ G H LP D +V YA P ER GPTV LD ++ VA + D+ VW HFSPR+ V +E++ A P DA + EL N FVR RI +V RG +P+VHKV+AAQRA AL V++ADDG C G F Q C+ GS PP+GWA D PW +VR+P VLML+E A L AA
Sbjct: 1 MSGFHAGHEHLRLPNVTDVSVTYAGETEPPPGAGFDPFEREVHGPTVVLDDRASKIRVASNNSAFE------DIDVWTCHFSPRSFKVKSEVVVAQPADARS-ELENGRFVRNRIVVVQRGDIPIVHKVLAAQRAGALGVIVADDGRC--GGSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAERLTAA 189
BLAST of jgi.p|Trimin1|153086 vs. uniprot
Match: A0A024TF71_9STRA (Fibronectin type-III domain-containing protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TF71_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 6.050e-19 Identity = 63/129 (48.84%), Postives = 77/129 (59.69%), Query Frame = 1
Query: 226 VWAGHFSPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIAD-DGSCTHAGG----FSQFCMPGSSPP--DGWAREDSEGPWREVRIPHVLMLKEHAAVLLA 591
VW GHFSP+T+ V AE++ A P A P L N VR RIALV RG +PL +KV+ AQ A ALAVVI D DG C G F C GS+ +G+ +D W +RIPHVL+L+ AA LLA
Sbjct: 749 VWPGHFSPKTYSVVAEIVAASPVLADRP-LEN--DVRDRIALVRRGKLPLFNKVLHAQNAGALAVVIVDADGLCDDDSGTGGTFDHHCSVGSNHAFGEGFGAQDDAAVWSAIRIPHVLLLRGDAAALLA 874
BLAST of jgi.p|Trimin1|153086 vs. uniprot
Match: A0A7S1XPP5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPP5_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 2.060e-18 Identity = 74/206 (35.92%), Postives = 98/206 (47.57%), Query Frame = 1
Query: 22 APLQPLPTPR-DPAVRYADFGGAPIVGLHAHAERMAR------GPTVTLDAARERVHVADDRGPLAIALGG-----ADVPVWAGHFSPRTHLVTAELIPADPPDAAAPE--LRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADDGSCTHAGGFSQFCMPGS----SPPDGWAREDSEGPWREVRIPHVLMLKEHAAVL 585
A L+ + P+ P D G AP+ LH H R +T +A + D + GG + VWA +SP + V A+L A+P A E + S V R+ LV RG PLV KV+ AQ+A AL V+I DDG C F Q C+PGS S G+A +D G WR+VRIP VL+L + VL
Sbjct: 656 AALETVKAPKFRPGAGSIDSGDAPV--LHGHGSGAHRIHDAHKTGNMTAEATTGAIVNLHDHAHSLLVDGGDGGTNLQLAVWAAAWSPASFSVRAQLAMAEPATACRAEGGAGHPSVVHHRVLLVERGGCPLVQKVLTAQKAGALGVIIVDDGRCEK---FDQHCVPGSDKVLSEGQGFAAQDHPGDWRKVRIPAVLVLADDGEVL 856
BLAST of jgi.p|Trimin1|153086 vs. uniprot
Match: A0A6G0WVY2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WVY2_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 5.120e-16 Identity = 54/123 (43.90%), Postives = 74/123 (60.16%), Query Frame = 1
Query: 226 VWAGHFSPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADDGSCTHAGGFSQFCMPGSSPP--DGWAREDSEGPWREVRIPHVLMLKEHAAVLL 588
VWAGHFS + V AE++ ADP A P L+N VR RIA++ RG +P+ +KV+ AQ A ALAVV+ D + A F C+PGS+ +G+ DS W ++ IPHVL+ + VLL
Sbjct: 693 VWAGHFSTNKYNVVAEMVLADPVYADGP-LKNEIDVRDRIAVILRGKLPIFNKVLHAQTAGALAVVLIDTRNQCEA--FDHHCIPGSNAAYGEGFGALDSAVVWEKINIPHVLVRYDDGLVLL 812
BLAST of jgi.p|Trimin1|153086 vs. uniprot
Match: A0A835Z4S0_9STRA (PA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4S0_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 1.010e-9 Identity = 42/125 (33.60%), Postives = 64/125 (51.20%), Query Frame = 1
Query: 205 LGGADVPVWAGHFSPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADDGSCTHAGGFSQFCMPGSSPPDGWAREDSEGPWREVRIPHVLMLKEHAA 579
L G+ VP R T ++I A P D +A EL N V G IAL+ RG +PL+ KV+ Q A A+ ++ D+G C+ F + G P G+A D W +V+IP +L+ ++ +
Sbjct: 55 LEGSHVPALRAAHGQRAFNATGDIIYAVPNDGSA-ELLNPDEVAGHIALLDRGTIPLIEKVLKVQAAGAVGALLVDNGECSE--DFMRCGRTGGVPEGGFAWRDQPYDWSKVKIPALLVSEKEGS 176
BLAST of jgi.p|Trimin1|153086 vs. uniprot
Match: A0A8J2SH82_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SH82_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 8.750e-9 Identity = 42/107 (39.25%), Postives = 61/107 (57.01%), Query Frame = 1
Query: 250 RTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADDGSCTHAGGFSQFCMPGSSPPDGWAREDSEGPWREVRIPHVLMLKE 570
R + +T++L+ A P DA+ + NA + G +ALV R A PLV K++ AQ A A+ VV+ DDG C + GS+ G+A D WR V+IP VL+ +E
Sbjct: 76 RDYKITSKLVYALPNDASTKPM-NADELTGNVALVHRSATPLVQKILHAQEAGAVGVVLVDDGRCESDLNCGRI---GSARLGGFAPRDDPSSWRLVKIPSVLVSQE 178
BLAST of jgi.p|Trimin1|153086 vs. uniprot
Match: A0A5A8DWN8_CAFRO (PA domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DWN8_CAFRO) HSP 1 Score: 58.9 bits (141), Expect = 4.010e-7 Identity = 44/127 (34.65%), Postives = 65/127 (51.18%), Query Frame = 1
Query: 211 GADVPVWAGHFSPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADD-GSCTHAGGFSQFCMPGSSPPDGWAREDSEGPWREVRIPHVLMLKEHAAVLL 588
G+ +WA P + + AEL+ + P DA+ P + VRG LV RG P++ KV+ AQ A A+AV++ D G C+ A F + SS G+A D W+ V IP L+ + A L+
Sbjct: 98 GSFATIWAAAHGPPSFDIEAELVYSVPNDASEPLVNP---VRGAAVLVERGGAPIITKVIHAQEAGAVAVIVIDTPGDCSEA--FECGRLGSSSGGTGFAAADPASRWQHVIIPVALVTRGTAQRLV 219
BLAST of jgi.p|Trimin1|153086 vs. uniprot
Match: A0A7S2WGD9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WGD9_9STRA) HSP 1 Score: 52.0 bits (123), Expect = 4.170e-5 Identity = 33/86 (38.37%), Postives = 46/86 (53.49%), Query Frame = 1
Query: 187 GPLAIALGGADVPVWAGHFSPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADDGSC 444
G + LG A P+ + VT ++ A P L N+ + G+IA V RG +PLV K++ AQ A A+ VVIADDG+C
Sbjct: 71 GTQVLGLGAAQ--------GPKEYHVTGDMAYAVPNQMQQGALLNSMELSGKIAFVDRGDIPLVEKILLAQDAGAVGVVIADDGNC 148 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153086 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6540 ID=mRNA_6540|Name=jgi.p|Trimin1|153086|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=594bp|location=Sequence derived from alignment at Contig_62:533782..534375- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGCAGGGCATCCACGGCAACGCGCCGCTGCAGCCGCTGCCGACGCCGCGback to top protein sequence of jgi.p|Trimin1|153086 >Trimin1|153086|gw1.62.192.1 ID=Trimin1|153086|gw1.62.192.1|Name=jgi.p|Trimin1|153086|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=198bp VQGIHGNAPLQPLPTPRDPAVRYADFGGAPIVGLHAHAERMARGPTVTLDback to top mRNA from alignment at Contig_62:533782..534375- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6540 ID=mRNA_6540|Name=jgi.p|Trimin1|153086|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=594bp|location=Sequence derived from alignment at Contig_62:533782..534375- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_62:533782..534375- >mRNA_6540 ID=mRNA_6540|Name=jgi.p|Trimin1|153086|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=594bp|location=Sequence derived from alignment at Contig_62:533782..534375- (Tribonema minus UTEX_B_3156 )back to top |