mRNA_6465 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|132964
Unique NamemRNA_6465
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|132964 vs. uniprot
Match: A0A835YMY4_9STRA (Tyrosine phosphatase family-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMY4_9STRA)

HSP 1 Score: 152 bits (385), Expect = 3.730e-47
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1
Query:    1 IALLQENPCGDYPGDYDVGEEAVKGALELLLDHKLYPILLVCSAGSHLCSRLIGCLRRLQHWSMTAILDEVR 216
            IALLQENPCGDYPGDYDVGEEAVKGALELLLDHKLYPILLVCSAGSHLCSRLIGCLRRLQHWSMTAILDEVR
Sbjct:    1 IALLQENPCGDYPGDYDVGEEAVKGALELLLDHKLYPILLVCSAGSHLCSRLIGCLRRLQHWSMTAILDEVR 72          
BLAST of jgi.p|Trimin1|132964 vs. uniprot
Match: A0A4P9XUQ0_9FUNG (Protein-tyrosine phosphatase (Fragment) n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XUQ0_9FUNG)

HSP 1 Score: 67.4 bits (163), Expect = 2.420e-12
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    1 IALLQENPCGDYPGDYDVGEEAVKGALELLLDHKLYPILLVCSAGSHLCSRLIGCLRRLQHWSMTAILDEVR 216
            I L Q    G+     D+ E+ +  AL +LLD + +PIL+ C+ G H    LIGCLR+LQHWS T+I DE R
Sbjct:   60 IRLFQFGVAGNKEPFVDIPEDVICAALAVLLDRRNHPILIHCNKGKHRTGCLIGCLRKLQHWSHTSIFDEYR 131          
BLAST of jgi.p|Trimin1|132964 vs. uniprot
Match: A0A4P9Z3Q4_9FUNG (Protein-tyrosine phosphatase (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z3Q4_9FUNG)

HSP 1 Score: 67.0 bits (162), Expect = 3.420e-12
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    1 IALLQENPCGDYPGDYDVGEEAVKGALELLLDHKLYPILLVCSAGSHLCSRLIGCLRRLQHWSMTAILDEVR 216
            + L Q    G+     D+ E+ +  AL +LLD + +PI++ C+ G H    L+GCLR+LQHWS TAI DE R
Sbjct:   60 VTLFQFGVAGNKEPFVDIPEDVICAALAVLLDRRNHPIVIHCNKGKHRTGCLVGCLRKLQHWSHTAIFDEYR 131          
BLAST of jgi.p|Trimin1|132964 vs. uniprot
Match: A0A4Q0A239_9FUNG (Protein-tyrosine phosphatase (Fragment) n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4Q0A239_9FUNG)

HSP 1 Score: 65.9 bits (159), Expect = 3.430e-12
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    1 IALLQENPCGDYPGDYDVGEEAVKGALELLLDHKLYPILLVCSAGSHLCSRLIGCLRRLQHWSMTAILDEVR 216
            I L Q    G+     D+ ++ +  AL +LLD + +PIL+ C+ G H    L+GCLRRLQHWS TAI +E R
Sbjct:    9 IQLYQFGVAGNKEPFVDIPQDTICAALAVLLDRRNHPILIHCNKGKHRTGCLVGCLRRLQHWSHTAIFNEYR 80          
BLAST of jgi.p|Trimin1|132964 vs. uniprot
Match: F4NZ66_BATDJ (Tyrosine-protein phosphatase domain-containing protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4NZ66_BATDJ)

HSP 1 Score: 68.2 bits (165), Expect = 5.110e-12
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 IALLQENPCGDYPGDYDVGEEAVKGALELLLDHKLYPILLVCSAGSHLCSRLIGCLRRLQHWSMTAILDEVR 216
            I L Q    G+     D+ EE V  AL +++D + +P+L+ C+ G H    L+GCLR++QHWSMT+I DE R
Sbjct:  150 IHLFQFGVAGNKEPFVDIPEETVCAALSVIMDERNHPLLIHCNKGKHRTGCLVGCLRKMQHWSMTSIFDEYR 221          
BLAST of jgi.p|Trimin1|132964 vs. uniprot
Match: A0A1S8VN46_9FUNG (Tyrosine-protein phosphatase domain-containing protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VN46_9FUNG)

HSP 1 Score: 68.6 bits (166), Expect = 5.260e-12
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 IALLQENPCGDYPGDYDVGEEAVKGALELLLDHKLYPILLVCSAGSHLCSRLIGCLRRLQHWSMTAILDEVR 216
            I L Q    G+     D+ EE V  AL +++D + +P+L+ C+ G H    L+GCLR++QHWSMT+I DE R
Sbjct:  194 IRLFQFGVAGNKEPFVDIPEETVCAALSVIMDQRNHPLLIHCNKGKHRTGCLVGCLRKIQHWSMTSIFDEYR 265          
BLAST of jgi.p|Trimin1|132964 vs. uniprot
Match: A0A7S0U692_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U692_HEMAN)

HSP 1 Score: 67.4 bits (163), Expect = 1.180e-11
Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    1 IALLQENPCGDYPGDYDVGEEAVKGALELLLDHKLYPILLVCSAGSHLCSRLIGCLRRLQHWSMTAILDEVR 216
            + + +    G+     D+ +E +K AL+ LLD + +P+L+ C+ G H    L+GCLR + HWSMTAI DE R
Sbjct:  174 VTVFEHGVSGNKEPFVDISDEMIKTALQRLLDVRNHPVLIHCNQGKHRTGSLVGCLRAMNHWSMTAIFDEYR 245          
BLAST of jgi.p|Trimin1|132964 vs. uniprot
Match: L1IX82_GUITC (Tyrosine-protein phosphatase domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IX82_GUITC)

HSP 1 Score: 65.1 bits (157), Expect = 1.600e-11
Identity = 27/53 (50.94%), Postives = 43/53 (81.13%), Query Frame = 1
Query:   58 EEAVKGALELLLDHKLYPILLVCSAGSHLCSRLIGCLRRLQHWSMTAILDEVR 216
            ++ +K ALE++LDH+ +P+L+ C++G    + L+GCLRRLQ+WS+T+ILDE R
Sbjct:   79 DDFIKDALEMVLDHRKHPLLICCTSGVFQTAPLVGCLRRLQNWSLTSILDEYR 131          
BLAST of jgi.p|Trimin1|132964 vs. uniprot
Match: A0A507DSA7_9FUNG (Tyrosine-protein phosphatase domain-containing protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DSA7_9FUNG)

HSP 1 Score: 67.0 bits (162), Expect = 1.610e-11
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    1 IALLQENPCGDYPGDYDVGEEAVKGALELLLDHKLYPILLVCSAGSHLCSRLIGCLRRLQHWSMTAILDEVR 216
            I L Q    G+     D+ E+ +  AL +LLD + +PIL+ C+ G H    L+GCLR+LQHWS T+I DE R
Sbjct:  157 IQLFQFGVAGNKEPFVDIPEDTICAALTVLLDRRNHPILIHCNKGKHRTGCLVGCLRKLQHWSHTSIFDEYR 228          
BLAST of jgi.p|Trimin1|132964 vs. uniprot
Match: A0A0D2WXR3_CAPO3 (Uncharacterized protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WXR3_CAPO3)

HSP 1 Score: 64.3 bits (155), Expect = 1.970e-11
Identity = 28/55 (50.91%), Postives = 42/55 (76.36%), Query Frame = 1
Query:   52 VGEEAVKGALELLLDHKLYPILLVCSAGSHLCSRLIGCLRRLQHWSMTAILDEVR 216
            V +E VK ALE+ LD   +P++L+CS+G H    ++GCLRRLQ+W++T+IL+E R
Sbjct:   28 VSDELVKEALEITLDVTTHPVMLMCSSGIHQTGTIVGCLRRLQNWNLTSILNEYR 82          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132964 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YMY4_9STRA3.730e-47100.00Tyrosine phosphatase family-domain-containing prot... [more]
A0A4P9XUQ0_9FUNG2.420e-1245.83Protein-tyrosine phosphatase (Fragment) n=1 Tax=Th... [more]
A0A4P9Z3Q4_9FUNG3.420e-1243.06Protein-tyrosine phosphatase (Fragment) n=1 Tax=Sy... [more]
A0A4Q0A239_9FUNG3.430e-1244.44Protein-tyrosine phosphatase (Fragment) n=1 Tax=Di... [more]
F4NZ66_BATDJ5.110e-1243.06Tyrosine-protein phosphatase domain-containing pro... [more]
A0A1S8VN46_9FUNG5.260e-1243.06Tyrosine-protein phosphatase domain-containing pro... [more]
A0A7S0U692_HEMAN1.180e-1140.28Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
L1IX82_GUITC1.600e-1150.94Tyrosine-protein phosphatase domain-containing pro... [more]
A0A507DSA7_9FUNG1.610e-1144.44Tyrosine-protein phosphatase domain-containing pro... [more]
A0A0D2WXR3_CAPO31.970e-1150.91Uncharacterized protein n=2 Tax=Capsaspora owczarz... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_62contigContig_62:59070..59285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|132964|gw1.62.35.1
BRITEko00000,ko01000,ko01009
KEGG koko:K18045
EC3.1.3.48
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006996,GO:0007010,GO:0007015,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016192,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0023052,GO:0030029,GO:0030036,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051179,GO:0051234,GO:0071704,GO:0071840,GO:0097435,GO:0098657,GO:0140096,GO:1901564
Preferred nameSIW14
Description-phosphatase
COG categoryV
Max annot lvl4751|Fungi
EggNOG OGsCOG2365@1|root,KOG1572@2759|Eukaryota,3A0SP@33154|Opisthokonta,3P23A@4751|Fungi
Evalue8.38e-13
Seed ortholog109871.XP_006677425.1
Hectar predicted targeting categoryother localisation
TranscriptId133286
TrackFilteredModels1
ProteinId132964
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132964gene_6465Tribonema minus UTEX_B_3156 geneContig_62 59070..59285 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6465_1exon_6465_1Tribonema minus UTEX_B_3156 exonContig_62 59070..59285 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6465CDS_6465Tribonema minus UTEX_B_3156 CDSContig_62 59070..59285 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132964Trimin1|132964|gw1.62.35.1Tribonema minus UTEX_B_3156 polypeptideContig_62 59070..59285 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6465 ID=mRNA_6465|Name=jgi.p|Trimin1|132964|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=216bp|location=Sequence derived from alignment at Contig_62:59070..59285- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATTGCATTGTTGCAGGAAAACCCCTGCGGCGATTATCCCGGCGACTACGA
CGTAGGCGAGGAGGCCGTGAAGGGGGCCCTGGAGCTGCTGCTGGATCACA
AGCTGTACCCCATACTGCTAGTGTGCAGCGCGGGGAGCCACCTGTGCTCG
CGCCTGATTGGTTGCCTGCGGCGGCTGCAGCACTGGAGCATGACGGCGAT
ACTTGATGAGGTGCGG
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protein sequence of jgi.p|Trimin1|132964

>Trimin1|132964|gw1.62.35.1 ID=Trimin1|132964|gw1.62.35.1|Name=jgi.p|Trimin1|132964|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=72bp
IALLQENPCGDYPGDYDVGEEAVKGALELLLDHKLYPILLVCSAGSHLCS
RLIGCLRRLQHWSMTAILDEVR
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mRNA from alignment at Contig_62:59070..59285-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6465 ID=mRNA_6465|Name=jgi.p|Trimin1|132964|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=216bp|location=Sequence derived from alignment at Contig_62:59070..59285- (Tribonema minus UTEX_B_3156 )
ATTGCATTGTTGCAGGAAAACCCCTGCGGCGATTATCCCGGCGACTACGA CGTAGGCGAGGAGGCCGTGAAGGGGGCCCTGGAGCTGCTGCTGGATCACA AGCTGTACCCCATACTGCTAGTGTGCAGCGCGGGGAGCCACCTGTGCTCG CGCCTGATTGGTTGCCTGCGGCGGCTGCAGCACTGGAGCATGACGGCGAT ACTTGATGAGGTGCGG
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Coding sequence (CDS) from alignment at Contig_62:59070..59285-

>mRNA_6465 ID=mRNA_6465|Name=jgi.p|Trimin1|132964|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=216bp|location=Sequence derived from alignment at Contig_62:59070..59285- (Tribonema minus UTEX_B_3156 )
ATTGCATTGTTGCAGGAAAACCCCTGCGGCGATTATCCCGGCGACTACGA
CGTAGGCGAGGAGGCCGTGAAGGGGGCCCTGGAGCTGCTGCTGGATCACA
AGCTGTACCCCATACTGCTAGTGTGCAGCGCGGGGAGCCACCTGTGCTCG
CGCCTGATTGGTTGCCTGCGGCGGCTGCAGCACTGGAGCATGACGGCGAT
ACTTGATGAGGTGCGG
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