mRNA_6432 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|162715
Unique NamemRNA_6432
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|162715 vs. uniprot
Match: A0A836CJ16_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ16_9STRA)

HSP 1 Score: 229 bits (583), Expect = 2.970e-76
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 
Query:    1 WTADEDAILRHVDEVGADNLRGKWPAVAELLPRHNAKSCQERWVQHLNPTLEITKSSWTTAEENVLWDAQQRLGNQWVEIAKLLPGRTDNQVKNHFWAAQRKMARRK 321
            WTADEDAILRHVDEVGADNLRGKWPAVAELLPRHNAKSCQERWVQHLNPTLEITKSSWTTAEENVLWDAQQRLGNQWVEIAKLLPGRTDNQVKNHFWAAQRKMARRK
Sbjct:    1 WTADEDAILRHVDEVGADNLRGKWPAVAELLPRHNAKSCQERWVQHLNPTLEITKSSWTTAEENVLWDAQQRLGNQWVEIAKLLPGRTDNQVKNHFWAAQRKMARRK 107
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BLAST of jgi.p|Trimin1|162715 vs. uniprot
Match: A0A835YZB3_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZB3_9STRA)

HSP 1 Score: 172 bits (435), Expect = 9.300e-54
Identity = 85/102 (83.33%), Postives = 89/102 (87.25%), Query Frame = 1 
Query:    1 WTADEDAILR-HVDEVGADNLRGKWPAVAELLPRHNAKSCQERWVQHLNPTLEITKSSWTTAEENVLWDAQQRLGNQWVEIAKLLPGRTDNQVKNHFWAAQR 303
            WTADEDAILR HVDEVGADNLRGKWPAVAELLPRHNA  C+ERWVQHL+P  EITK SWT AEE+VL DAQQRLGN W  IAKLL GRTDN+VKNHF AAQR
Sbjct:    2 WTADEDAILRQHVDEVGADNLRGKWPAVAELLPRHNATRCRERWVQHLSP--EITKRSWTPAEEDVLRDAQQRLGNSWAAIAKLLKGRTDNEVKNHFHAAQR 101
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BLAST of jgi.p|Trimin1|162715 vs. uniprot
Match: A0A836CDI7_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDI7_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.930e-38
Identity = 60/71 (84.51%), Postives = 65/71 (91.55%), Query Frame = 1 
Query:   67 KWPAVAELLPRHNAKSCQERWVQHLNPTLEITKSSWTTAEENVLWDAQQRLGNQWVEIAKLLPGRTDNQVK 279
            KWPAVAELL RHNA+ C++RW+QHLNPTLE TKSSWTTAEENVLWDAQQRLGN+WV IAKLL GRTDN VK
Sbjct:    1 KWPAVAELLARHNARRCRDRWLQHLNPTLERTKSSWTTAEENVLWDAQQRLGNKWVAIAKLLKGRTDNDVK 71
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BLAST of jgi.p|Trimin1|162715 vs. uniprot
Match: A0A836C844_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C844_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.190e-25
Identity = 52/103 (50.49%), Postives = 68/103 (66.02%), Query Frame = 1 
Query:    1 WTADEDAILRH-VDEVGADNLRGKWPAVAELLPRHNAKSCQERWVQHLNPTLEITKSSWTTAEENVLWDAQQRLGNQWVEIAKLLPGRTDNQVKNHFWAAQRK 306
            WT  ED ++R  V+ VG   +  KW AVA  LP    K C+ERW  HL+P   I +S WT  E+ V+++AQ RLGN+W EIAKLLPGRT+N VKN F ++ +K
Sbjct:   57 WTETEDRVVRESVEAVGIAKV--KWSAVAAKLPGRIGKQCRERWFNHLDPA--IKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQK 155
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BLAST of jgi.p|Trimin1|162715 vs. uniprot
Match: F0Y9B4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9B4_AURAN)

HSP 1 Score: 101 bits (251), Expect = 4.280e-25
Identity = 52/103 (50.49%), Postives = 68/103 (66.02%), Query Frame = 1 
Query:    1 WTADEDAILRH-VDEVGADNLRGKWPAVAELLPRHNAKSCQERWVQHLNPTLEITKSSWTTAEENVLWDAQQRLGNQWVEIAKLLPGRTDNQVKNHFWAAQRK 306
            WTADED I++  V   GA N+  KW  +A  LP    K C+ERW  HL+P  EI K  WT  E+N+L++ Q+  GN+W EIAKLLPGRT+N VKN + ++ RK
Sbjct:   55 WTADEDKIVKDMVLRHGAGNI--KWSVIAAQLPGRIGKQCRERWFNHLDP--EIKKGDWTPEEDNILFETQRVHGNRWSEIAKLLPGRTENAVKNRWNSSARK 153
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BLAST of jgi.p|Trimin1|162715 vs. uniprot
Match: A0A8C4B927_9TELE (Uncharacterized protein n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4B927_9TELE)

HSP 1 Score: 100 bits (250), Expect = 1.250e-24
Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 1 
Query:    1 WTADEDAILRH-VDEVGADNLRGKWPAVAELLPRHNAKSCQERWVQHLNPTLEITKSSWTTAEENVLWDAQQRLGNQWVEIAKLLPGRTDNQVKNHFWAAQRK 306
            WT  EDA++   V + GA N    WP +AE +P    K C+ERW  HLNP  EI KS WT  E+ +++ A + LGN+W +IAKLLPGR+DN +KNH+ +  R+
Sbjct:   37 WTKKEDAMMIELVSKYGAKN----WPVIAEHIPGRVGKQCRERWHNHLNP--EIKKSMWTPQEDKLIYKAHRVLGNRWAQIAKLLPGRSDNSIKNHWNSTMRR 133
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BLAST of jgi.p|Trimin1|162715 vs. uniprot
Match: G5A1P6_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A1P6_PHYSP)

HSP 1 Score: 98.2 bits (243), Expect = 1.610e-24
Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = 1 
Query:    1 WTADEDA-ILRHVDEVGADNLRGKWPAVAELLPRHNAKSCQERWVQHLNPTLEITKSSWTTAEENVLWDAQQRLGNQWVEIAKLLPGRTDNQVKNHFWAAQRKMAR 315
            WT ++DA ILR V E G      +W  +A LLP    K C+ RW+  L+P   I K+ W   E  ++  AQ+RLGN+W EIAKLLPGRTDN +KNH+++  R+  R
Sbjct:    1 WTPEDDAVILRFVRECGTK----RWAKIAALLPGRTPKQCRTRWLNFLDPA--IDKAPWRADETQLILAAQERLGNRWAEIAKLLPGRTDNAIKNHWYSTYRRRCR 100
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BLAST of jgi.p|Trimin1|162715 vs. uniprot
Match: G5A1Y2_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A1Y2_PHYSP)

HSP 1 Score: 99.0 bits (245), Expect = 3.020e-24
Identity = 45/106 (42.45%), Postives = 65/106 (61.32%), Query Frame = 1 
Query:    1 WTADEDAILRHVDEVGADNLRGK-WPAVAELLPRHNAKSCQERWVQHLNPTLEITKSSWTTAEENVLWDAQQRLGNQWVEIAKLLPGRTDNQVKNHFWAAQRKMAR 315
            W+ DED  L    E+     R   W A+A LLP    K C+ERWV HL+P   + K +WT  E+ +++  + R+GN+W +IA+LLPGRTDN VKN +++  R+  R
Sbjct:   27 WSPDEDGAL----ELAVQTTRANDWSAIARLLPGRCGKQCRERWVNHLSPA--VNKEAWTEEEDQLIFKTRDRIGNRWADIARLLPGRTDNAVKNRYYSTMRRRGR 126
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BLAST of jgi.p|Trimin1|162715 vs. uniprot
Match: A0A2V3J1G3_9FLOR (Transcription factor MYB3R-3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1G3_9FLOR)

HSP 1 Score: 105 bits (262), Expect = 3.480e-24
Identity = 55/108 (50.93%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:    1 WTADED-AILRHVDEVGADNLRGKWPAVAELLPRHNAKSCQERWVQHLNPTLEITKSSWTTAEENVLWDAQQRLGNQWVEIAKLLPGRTDNQVKNHFWAAQRKMARRK 321
            WT  ED  I R V  +GA+    KW  +A+ LP    K C+ERW  HLNP  EI K  WT  EE +L +A  R+GN+W  IAK LPGRTDN +KNH+ A QR+ A RK
Sbjct:  298 WTQHEDDTITRLVATLGAN----KWSLIAKQLPGRIGKQCRERWFNHLNP--EINKDPWTEEEERILREAHSRIGNKWAVIAKYLPGRTDNAIKNHYNATQRRAATRK 399
[Close]
BLAST of jgi.p|Trimin1|162715 vs. uniprot
Match: K3WA24_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WA24_GLOUD)

HSP 1 Score: 105 bits (261), Expect = 3.750e-24
Identity = 54/113 (47.79%), Postives = 72/113 (63.72%), Query Frame = 1 
Query:    1 WTADED-AILRHVDEVGADNLRGKWPAVAELLPRHN------AKSCQERWVQHLNPTLEITKSSWTTAEENVLWDAQQRLGNQWVEIAKLLPGRTDNQVKNHFWAAQRKMARR 318
            WT  ED AI+R VDE G      +W  +++ L   N       K C+ RW+ HL+PT  I K  WTT EE ++ DAQ RLGN+W EI+KLLPGRTDN +KNH++++ R+  RR
Sbjct:   21 WTRKEDDAIIRLVDEYGTK----RWSVISDHLNGENHGTERTGKQCRTRWLNHLDPT--IKKDPWTTEEEQIIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRR 127
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162715 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJ16_9STRA2.970e-76100.00Homeodomain-like protein n=1 Tax=Tribonema minus T... [more]
A0A835YZB3_9STRA9.300e-5483.33Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A836CDI7_9STRA1.930e-3884.51Homeodomain-like protein n=1 Tax=Tribonema minus T... [more]
A0A836C844_9STRA3.190e-2550.49Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
F0Y9B4_AURAN4.280e-2550.49Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A8C4B927_9TELE1.250e-2447.57Uncharacterized protein n=1 Tax=Denticeps clupeoid... [more]
G5A1P6_PHYSP1.610e-2446.23Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
G5A1Y2_PHYSP3.020e-2442.45Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A2V3J1G3_9FLOR3.480e-2450.93Transcription factor MYB3R-3 n=1 Tax=Gracilariopsi... [more]
K3WA24_GLOUD3.750e-2447.79Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_22contigContig_22:1051875..1052198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|162715|e_gw1.22.10.1
DescriptionMyb-like DNA-binding protein. Source PGD
COG categoryK
Max annot lvl121069|Pythiales
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota,1MAR4@121069|Pythiales
Evalue2.4e-25
Seed ortholog115417.EPrPW00000023262
Hectar predicted targeting categoryother localisation
TranscriptId163037
TrackFilteredModels1
ProteinId162715
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162715gene_6432Tribonema minus UTEX_B_3156 geneContig_22 1051875..1052198 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6432_1exon_6432_1Tribonema minus UTEX_B_3156 exonContig_22 1051875..1052198 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6432CDS_6432Tribonema minus UTEX_B_3156 CDSContig_22 1051875..1052198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162715Trimin1|162715|e_gw1.22.10.1Tribonema minus UTEX_B_3156 polypeptideContig_22 1051875..1052198 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6432 ID=mRNA_6432|Name=jgi.p|Trimin1|162715|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=324bp|location=Sequence derived from alignment at Contig_22:1051875..1052198- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGGACTGCGGACGAGGACGCCATACTGCGGCACGTGGACGAGGTTGGCGC
AGACAACTTAAGGGGGAAGTGGCCGGCCGTTGCGGAGCTCTTGCCACGGC
ACAATGCCAAGAGCTGCCAGGAGCGCTGGGTTCAGCACCTGAACCCCACG
CTGGAGATCACAAAGAGCTCCTGGACGACGGCGGAGGAGAATGTGCTCTG
GGATGCCCAACAGCGCCTTGGCAACCAATGGGTTGAGATTGCCAAGCTGC
TGCCGGGGCGAACGGATAATCAAGTAAAGAACCATTTCTGGGCCGCTCAA
CGAAAGATGGCGCGTAGGAAGTGA
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protein sequence of jgi.p|Trimin1|162715

>Trimin1|162715|e_gw1.22.10.1 ID=Trimin1|162715|e_gw1.22.10.1|Name=jgi.p|Trimin1|162715|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=108bp
WTADEDAILRHVDEVGADNLRGKWPAVAELLPRHNAKSCQERWVQHLNPT
LEITKSSWTTAEENVLWDAQQRLGNQWVEIAKLLPGRTDNQVKNHFWAAQ
RKMARRK*
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mRNA from alignment at Contig_22:1051875..1052198-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6432 ID=mRNA_6432|Name=jgi.p|Trimin1|162715|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=324bp|location=Sequence derived from alignment at Contig_22:1051875..1052198- (Tribonema minus UTEX_B_3156 )
TGGACTGCGGACGAGGACGCCATACTGCGGCACGTGGACGAGGTTGGCGC
AGACAACTTAAGGGGGAAGTGGCCGGCCGTTGCGGAGCTCTTGCCACGGC
ACAATGCCAAGAGCTGCCAGGAGCGCTGGGTTCAGCACCTGAACCCCACG
CTGGAGATCACAAAGAGCTCCTGGACGACGGCGGAGGAGAATGTGCTCTG
GGATGCCCAACAGCGCCTTGGCAACCAATGGGTTGAGATTGCCAAGCTGC
TGCCGGGGCGAACGGATAATCAAGTAAAGAACCATTTCTGGGCCGCTCAA
CGAAAGATGGCGCGTAGGAAGTGA
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Coding sequence (CDS) from alignment at Contig_22:1051875..1052198-

>mRNA_6432 ID=mRNA_6432|Name=jgi.p|Trimin1|162715|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=324bp|location=Sequence derived from alignment at Contig_22:1051875..1052198- (Tribonema minus UTEX_B_3156 )
TGGACTGCGGACGAGGACGCCATACTGCGGCACGTGGACGAGGTTGGCGC
AGACAACTTAAGGGGGAAGTGGCCGGCCGTTGCGGAGCTCTTGCCACGGC
ACAATGCCAAGAGCTGCCAGGAGCGCTGGGTTCAGCACCTGAACCCCACG
CTGGAGATCACAAAGAGCTCCTGGACGACGGCGGAGGAGAATGTGCTCTG
GGATGCCCAACAGCGCCTTGGCAACCAATGGGTTGAGATTGCCAAGCTGC
TGCCGGGGCGAACGGATAATCAAGTAAAGAACCATTTCTGGGCCGCTCAA
CGAAAGATGGCGCGTAGGAAGTGA
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