mRNA_64 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157529
Unique NamemRNA_64
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|157529 vs. uniprot
Match: A0A835Z4C5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4C5_9STRA)

HSP 1 Score: 248 bits (634), Expect = 3.220e-73
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:    1 MAKRKRAFAPPSDDAARDTIRARLAAEYAVREAEAPWYIAQFVEAEQPEPAVTFSSTLLXXXXXXXXXXXXXXASKECAFPGCTGHAPRKWCEEHKSHKKCRAPACTNTAGYNLHGAGGQWCKAHRGEDMVDVVNP 408
            MAKRKRAFAPPSDDAARDTIRARLAAEYAVREAEAPWYIAQFVEAEQPEPAVTFSSTLLXXXXXXXXXXXXXXASKECAFPGCTGHAPRKWCEEHKSHKKCRAPACTNTAGYNLHGAGGQWCKAHRGEDMVDVVNP
Sbjct:    1 MAKRKRAFAPPSDDAARDTIRARLAAEYAVREAEAPWYIAQFVEAEQPEPAVTFSSTLLXXXXXXXXXXXXXXASKECAFPGCTGHAPRKWCEEHKSHKKCRAPACTNTAGYNLHGAGGQWCKAHRGEDMVDVVNP 136
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BLAST of jgi.p|Trimin1|157529 vs. uniprot
Match: A0A836CEU2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEU2_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.390e-17
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:  220 ASKECAFPGCTGHAPRKWCEEHKSHKKCRAPACTNTAGYNLHGAGGQWCKAHRGEDMVDVVN 405
            A KECAF GC  +APRKWC EHK H++C+ P+CT    YNL  AG QWCKAH+G+ MVDV N
Sbjct:    7 AGKECAFLGCPRNAPRKWCPEHKQHRECKEPSCTKQPTYNLPDAGAQWCKAHKGQGMVDVSN 68
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BLAST of jgi.p|Trimin1|157529 vs. uniprot
Match: A0A835ZAP8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAP8_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.730e-8
Identity = 27/61 (44.26%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:  223 SKECAFPGCTGHAPRKWCEEHKSHKKCRAPACTNTAGYNLHGAGGQWCKAHRGEDMVDVVN 405
            ++ C  P C   A RKWCE+H+ +K CRA  C   + Y + G G QWC  H+ E M DV+N
Sbjct:   52 ARTCPVPDCGKPAKRKWCEDHRHYKVCRAEGCEKRSTYGIIGGGAQWCITHKEEGMEDVIN 112
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BLAST of jgi.p|Trimin1|157529 vs. uniprot
Match: A0A835YL77_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL77_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.160e-8
Identity = 28/60 (46.67%), Postives = 35/60 (58.33%), Query Frame = 1 
Query:  223 SKECAFPGCTGHAPRKWCEEHKSHKKCRAPACTNTAGYNLHGAGGQWCKAHRGEDMVDVV 402
            +K C  P C   A RKWCE+H+ +K CRA  C     Y + GAG QWC  H+ E M +VV
Sbjct:   52 AKTCPVPDCGKPAKRKWCEDHRHYKICRAEGCEKLTTYGITGAGAQWCITHKEEGMENVV 111
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BLAST of jgi.p|Trimin1|157529 vs. uniprot
Match: A0A836CF86_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF86_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.700e-58
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 
Query:    1 MIKLCCAPGCHNTAAHKWCQDHLSSRTCRKEGCTKRTRFNHRGQGAQWCGTHKDEGMIDVVSSTCSAGCGKIPCFERPGLPGVLF 255
            MIKLCCAPGCHNTAAHKWCQDHLSSRTCRKEGCTKRTRFNHRGQGAQWCGTHKDEGMIDVVSSTCSAGCGKIPCFERPGLPGVLF
Sbjct:    1 MIKLCCAPGCHNTAAHKWCQDHLSSRTCRKEGCTKRTRFNHRGQGAQWCGTHKDEGMIDVVSSTCSAGCGKIPCFERPGLPGVLF 85
[Close]
BLAST of jgi.p|Trimin1|157529 vs. uniprot
Match: A0A835ZAP8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAP8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 5.160e-12
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    7 KLCCAPGCHNTAAHKWCQDHLSSRTCRKEGCTKRTRFNHRGQGAQWCGTHKDEGMIDVVSSTC 195
            + C  P C   A  KWC+DH   + CR EGC KR+ +   G GAQWC THK+EGM DV++  C
Sbjct:   53 RTCPVPDCGKPAKRKWCEDHRHYKVCRAEGCEKRSTYGIIGGGAQWCITHKEEGMEDVINKRC 115
[Close]
BLAST of jgi.p|Trimin1|157529 vs. uniprot
Match: A0A835YL77_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL77_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.070e-11
Identity = 32/63 (50.79%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    7 KLCCAPGCHNTAAHKWCQDHLSSRTCRKEGCTKRTRFNHRGQGAQWCGTHKDEGMIDVVSSTC 195
            K C  P C   A  KWC+DH   + CR EGC K T +   G GAQWC THK+EGM +VV   C
Sbjct:   53 KTCPVPDCGKPAKRKWCEDHRHYKICRAEGCEKLTTYGITGAGAQWCITHKEEGMENVVCKQC 115
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157529 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835Z4C5_9STRA3.220e-73100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CEU2_9STRA1.390e-1762.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZAP8_9STRA1.730e-844.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YL77_9STRA3.160e-846.67Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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BLAST of jgi.p|Trimin1|157529 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CF86_9STRA1.700e-58100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZAP8_9STRA5.160e-1249.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YL77_9STRA1.070e-1150.79Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:420120..421580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157529|e_gw1.3.417.1
Hectar predicted targeting categoryother localisation
TranscriptId157851
TrackFilteredModels1
ProteinId157529
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157529gene_64Tribonema minus UTEX_B_3156 geneContig_3 420120..421580 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_64_1exon_64_1Tribonema minus UTEX_B_3156 exonContig_3 420120..421580 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_64CDS_64Tribonema minus UTEX_B_3156 CDSContig_3 420120..421580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157529Trimin1|157529|e_gw1.3.417.1Tribonema minus UTEX_B_3156 polypeptideContig_3 420120..421580 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_64 ID=mRNA_64|Name=jgi.p|Trimin1|157529|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1461bp|location=Sequence derived from alignment at Contig_3:420120..421580+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAAACGTAAGCGTGCTTTCGCACCGCCGTCCGACGACGCAGCACG
TGATACCATTCGTGCGCGACTCGCAGCAGAGTATGCCGTGCGAGAAGCAG
AGGCTCCGTGGTATATAGCGCAGTTTGTTGAAGCCGAACAGCCGGAACCC
GCAGTCACTTTCTCCAGCACGCTTCTGGCAGCAGCGCCGTCGGCCGCCGC
TGTAGGCGGGGGCTCGGCCGCGAGCAAGGAGTGCGCCTTCCCGGGCTGTA
CTGGCCATGCTCCGCGCAAGTGGTGTGAGGAGCACAAAAGTCACAAGAAG
TGCAGAGCGCCAGCGTGTACCAATACGGCAGGTTACAATCTCCACGGCGC
AGGAGGGCAATGGTGCAAGGCACACAGAGGAGAGGATATGGTGGACGTAG
TCAACCCAAAGTGCATTGAACCCGGGTGCAGGAAATGTCCATCGTACGGG
ACGGAGGGGGGGCAAGCCATCTTCTGCGCAACCCATGCCAAGGATGGTAT
GCAAAACGTGGTGGCCAAACAGTGCGTTCACCCGGGCTGCACGAAGCACG
CTTACTACGGCACCACGTCGGGGCGGCCCACCTACTGCGCAGCGCATGCG
GAAGACGGCATGCACAATGTGATGAACAGACAGTGCGTGCATCCCGGCTG
CGTGAAAAACCCATTCTACGGCACTGAAACGGGGCGGGGCACTCACTGTG
CAGAGCATGCGGAGGACGGTATGCGCAATGTAATGATACCGCCATGTGCA
TTCCCCGGGTGCCTTAAGCGTCCGTGTTACGGTATCGAGGGAGGCAGAGC
AACGCACTGCGCAGGGCACGCCGAAGATGGCATGTGTAATGTGGTGAGCG
CGAGATGCGTTCTCCCGGGGTGCAACATAATACCCTCTTACGGCACCGAG
GCAGGACAGGCCACCCACTGCGCAACACACGCGGAAGATGGCATGCGCGA
CGTGGTGAACGCAAAATGCGTTTTCCCCATGTGCAACAAGGGCCCATGTT
ACGGTATTGAGGGGGGAGAGGCCACCCACTGCGCAGGTCACGCCGCCGAT
GACATGCGGAACGTGGTGAGCAAACAGTGTGTTCAGCCAGGTTGCAGCAA
ACAACCATGGTACGGGATTGAAGCGGGGCACGCTACTCACTGCGGGCAGC
ATGCCGAGGCTGGCATGCGTGACGTAAAGAGTGTGATGTGCCTCTACCCT
GGGTGCACCACACGTCCATCTTTCGGCAGCGAGGGAGGGCGCGCGACGCA
TTGCGCCACTCATGCGGAACTGGACATGAGGGACGTCAGCAACAAAAGGT
GTGCATGCCCTGGTTGCGGCAAGCAGCCTAACTACGGCACCGAGGCAGGA
AGGGGGATCTTCTGCGCAGAGCATGCCGAAATCGGCATGCACGATGTCAC
CACGAAGCGGTGTGAGCAGGGCGGAAAATGTCTGAGTGCCTCGGCGACAT
CTGCGGAGTGA
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protein sequence of jgi.p|Trimin1|157529

>Trimin1|157529|e_gw1.3.417.1 ID=Trimin1|157529|e_gw1.3.417.1|Name=jgi.p|Trimin1|157529|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=487bp
MAKRKRAFAPPSDDAARDTIRARLAAEYAVREAEAPWYIAQFVEAEQPEP
AVTFSSTLLAAAPSAAAVGGGSAASKECAFPGCTGHAPRKWCEEHKSHKK
CRAPACTNTAGYNLHGAGGQWCKAHRGEDMVDVVNPKCIEPGCRKCPSYG
TEGGQAIFCATHAKDGMQNVVAKQCVHPGCTKHAYYGTTSGRPTYCAAHA
EDGMHNVMNRQCVHPGCVKNPFYGTETGRGTHCAEHAEDGMRNVMIPPCA
FPGCLKRPCYGIEGGRATHCAGHAEDGMCNVVSARCVLPGCNIIPSYGTE
AGQATHCATHAEDGMRDVVNAKCVFPMCNKGPCYGIEGGEATHCAGHAAD
DMRNVVSKQCVQPGCSKQPWYGIEAGHATHCGQHAEAGMRDVKSVMCLYP
GCTTRPSFGSEGGRATHCATHAELDMRDVSNKRCACPGCGKQPNYGTEAG
RGIFCAEHAEIGMHDVTTKRCEQGGKCLSASATSAE*
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mRNA from alignment at Contig_3:420120..421580+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_64 ID=mRNA_64|Name=jgi.p|Trimin1|157529|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1461bp|location=Sequence derived from alignment at Contig_3:420120..421580+ (Tribonema minus UTEX_B_3156 )
ATGGCAAAACGTAAGCGTGCTTTCGCACCGCCGTCCGACGACGCAGCACG
TGATACCATTCGTGCGCGACTCGCAGCAGAGTATGCCGTGCGAGAAGCAG
AGGCTCCGTGGTATATAGCGCAGTTTGTTGAAGCCGAACAGCCGGAACCC
GCAGTCACTTTCTCCAGCACGCTTCTGGCAGCAGCGCCGTCGGCCGCCGC
TGTAGGCGGGGGCTCGGCCGCGAGCAAGGAGTGCGCCTTCCCGGGCTGTA
CTGGCCATGCTCCGCGCAAGTGGTGTGAGGAGCACAAAAGTCACAAGAAG
TGCAGAGCGCCAGCGTGTACCAATACGGCAGGTTACAATCTCCACGGCGC
AGGAGGGCAATGGTGCAAGGCACACAGAGGAGAGGATATGGTGGACGTAG
TCAACCCAAAGTGCATTGAACCCGGGTGCAGGAAATGTCCATCGTACGGG
ACGGAGGGGGGGCAAGCCATCTTCTGCGCAACCCATGCCAAGGATGGTAT
GCAAAACGTGGTGGCCAAACAGTGCGTTCACCCGGGCTGCACGAAGCACG
CTTACTACGGCACCACGTCGGGGCGGCCCACCTACTGCGCAGCGCATGCG
GAAGACGGCATGCACAATGTGATGAACAGACAGTGCGTGCATCCCGGCTG
CGTGAAAAACCCATTCTACGGCACTGAAACGGGGCGGGGCACTCACTGTG
CAGAGCATGCGGAGGACGGTATGCGCAATGTAATGATACCGCCATGTGCA
TTCCCCGGGTGCCTTAAGCGTCCGTGTTACGGTATCGAGGGAGGCAGAGC
AACGCACTGCGCAGGGCACGCCGAAGATGGCATGTGTAATGTGGTGAGCG
CGAGATGCGTTCTCCCGGGGTGCAACATAATACCCTCTTACGGCACCGAG
GCAGGACAGGCCACCCACTGCGCAACACACGCGGAAGATGGCATGCGCGA
CGTGGTGAACGCAAAATGCGTTTTCCCCATGTGCAACAAGGGCCCATGTT
ACGGTATTGAGGGGGGAGAGGCCACCCACTGCGCAGGTCACGCCGCCGAT
GACATGCGGAACGTGGTGAGCAAACAGTGTGTTCAGCCAGGTTGCAGCAA
ACAACCATGGTACGGGATTGAAGCGGGGCACGCTACTCACTGCGGGCAGC
ATGCCGAGGCTGGCATGCGTGACGTAAAGAGTGTGATGTGCCTCTACCCT
GGGTGCACCACACGTCCATCTTTCGGCAGCGAGGGAGGGCGCGCGACGCA
TTGCGCCACTCATGCGGAACTGGACATGAGGGACGTCAGCAACAAAAGGT
GTGCATGCCCTGGTTGCGGCAAGCAGCCTAACTACGGCACCGAGGCAGGA
AGGGGGATCTTCTGCGCAGAGCATGCCGAAATCGGCATGCACGATGTCAC
CACGAAGCGGTGTGAGCAGGGCGGAAAATGTCTGAGTGCCTCGGCGACAT
CTGCGGAGTGA
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Coding sequence (CDS) from alignment at Contig_3:420120..421580+

>mRNA_64 ID=mRNA_64|Name=jgi.p|Trimin1|157529|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1461bp|location=Sequence derived from alignment at Contig_3:420120..421580+ (Tribonema minus UTEX_B_3156 )
ATGGCAAAACGTAAGCGTGCTTTCGCACCGCCGTCCGACGACGCAGCACG
TGATACCATTCGTGCGCGACTCGCAGCAGAGTATGCCGTGCGAGAAGCAG
AGGCTCCGTGGTATATAGCGCAGTTTGTTGAAGCCGAACAGCCGGAACCC
GCAGTCACTTTCTCCAGCACGCTTCTGGCAGCAGCGCCGTCGGCCGCCGC
TGTAGGCGGGGGCTCGGCCGCGAGCAAGGAGTGCGCCTTCCCGGGCTGTA
CTGGCCATGCTCCGCGCAAGTGGTGTGAGGAGCACAAAAGTCACAAGAAG
TGCAGAGCGCCAGCGTGTACCAATACGGCAGGTTACAATCTCCACGGCGC
AGGAGGGCAATGGTGCAAGGCACACAGAGGAGAGGATATGGTGGACGTAG
TCAACCCAAAGTGCATTGAACCCGGGTGCAGGAAATGTCCATCGTACGGG
ACGGAGGGGGGGCAAGCCATCTTCTGCGCAACCCATGCCAAGGATGGTAT
GCAAAACGTGGTGGCCAAACAGTGCGTTCACCCGGGCTGCACGAAGCACG
CTTACTACGGCACCACGTCGGGGCGGCCCACCTACTGCGCAGCGCATGCG
GAAGACGGCATGCACAATGTGATGAACAGACAGTGCGTGCATCCCGGCTG
CGTGAAAAACCCATTCTACGGCACTGAAACGGGGCGGGGCACTCACTGTG
CAGAGCATGCGGAGGACGGTATGCGCAATGTAATGATACCGCCATGTGCA
TTCCCCGGGTGCCTTAAGCGTCCGTGTTACGGTATCGAGGGAGGCAGAGC
AACGCACTGCGCAGGGCACGCCGAAGATGGCATGTGTAATGTGGTGAGCG
CGAGATGCGTTCTCCCGGGGTGCAACATAATACCCTCTTACGGCACCGAG
GCAGGACAGGCCACCCACTGCGCAACACACGCGGAAGATGGCATGCGCGA
CGTGGTGAACGCAAAATGCGTTTTCCCCATGTGCAACAAGGGCCCATGTT
ACGGTATTGAGGGGGGAGAGGCCACCCACTGCGCAGGTCACGCCGCCGAT
GACATGCGGAACGTGGTGAGCAAACAGTGTGTTCAGCCAGGTTGCAGCAA
ACAACCATGGTACGGGATTGAAGCGGGGCACGCTACTCACTGCGGGCAGC
ATGCCGAGGCTGGCATGCGTGACGTAAAGAGTGTGATGTGCCTCTACCCT
GGGTGCACCACACGTCCATCTTTCGGCAGCGAGGGAGGGCGCGCGACGCA
TTGCGCCACTCATGCGGAACTGGACATGAGGGACGTCAGCAACAAAAGGT
GTGCATGCCCTGGTTGCGGCAAGCAGCCTAACTACGGCACCGAGGCAGGA
AGGGGGATCTTCTGCGCAGAGCATGCCGAAATCGGCATGCACGATGTCAC
CACGAAGCGGTGTGAGCAGGGCGGAAAATGTCTGAGTGCCTCGGCGACAT
CTGCGGAGTGA
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