mRNA_6391 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|43953
Unique NamemRNA_6391
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|43953 vs. uniprot
Match: A0A835Z587_9STRA (Cytochrome c1 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z587_9STRA)

HSP 1 Score: 500 bits (1288), Expect = 2.580e-177
Identity = 247/270 (91.48%), Postives = 249/270 (92.22%), Query Frame = 2
Query:   14 RLGIRSIRPSVAAASXXXXXXXXXXXXASCNDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHTEEGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITYME 823
            RL  R++RP   AA             A CNDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTH E GAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITYME
Sbjct:    4 RLASRALRPHAVAAGLTASAAAGAGA-ALCNDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHDEAGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITYME 272          
BLAST of jgi.p|Trimin1|43953 vs. uniprot
Match: D7FVX8_ECTSI (Ubiquinol cytochrome c reductase cytochrome c1 prec (ISS) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVX8_ECTSI)

HSP 1 Score: 342 bits (877), Expect = 1.230e-114
Identity = 170/262 (64.89%), Postives = 208/262 (79.39%), Query Frame = 2
Query:   32 IRPSVAAASXXXXXXXXXXXXASCNDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHTEEGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITY 817
            +R  VAAA+XXXXXXXX        DD + ++ Y WP  G L +FDHAAIRRG+QVYR+VCS+CHSI++++FRN +GV+H+E   KK+A EFEV D  PND+GEMFERPAK  DR PGPY+NEA  RAAN GA PPDLSL+ K RH G  YV +LLTGY ++P GKDLLPGL+YNPYF G +I+MPPPLMDGQVEY DGTPATV+QM+KDV+ FLAWCAEPE DERK+ G+K  + + LG+ ++ YYKR RW+P+KTRKITY
Sbjct:   18 LRARVAAAAXXXXXXXXVGGATVLCDDAVHTVEYDWPHSGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEAEVKKIAAEFEVEDG-PNDEGEMFERPAKPSDRIPGPYKNEASARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTEAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTPATVSQMSKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITY 278          
BLAST of jgi.p|Trimin1|43953 vs. uniprot
Match: A0A7R9YFS8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFS8_9STRA)

HSP 1 Score: 335 bits (858), Expect = 4.910e-112
Identity = 160/243 (65.84%), Postives = 195/243 (80.25%), Query Frame = 2
Query:   95 ASCNDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHTEEGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITYME 823
            A  +DD IPSL+ GW  +G  SS+D+ A+RRGFQVY++VCSSCHS++ I+FRN VGV  TE+ AKKLAE +E+ D  PND+GEMFERP KL D  PGP+ NE   RAAN GA PPDLSL+TKAR GG+DY+F+LLTGY ++P GK +L GL+YNPYF GGAIAMP  LMDGQVEYEDGTPAT +QMAKDV+ FLAWCAEPEHDERKK GV+ +  L +   IT YYKR R++P+KTR+ITY++
Sbjct:   23 AFASDDHIPSLNPGWTHNGFFSSYDYKAVRRGFQVYKEVCSSCHSLERIAFRNLVGVCFTEDQAKKLAESYEIVDG-PNDEGEMFERPGKLSDYIPGPHANEEAARAANNGAYPPDLSLITKARPGGVDYIFSLLTGYVEAPEGKTMLSGLHYNPYFPGGAIAMPKQLMDGQVEYEDGTPATESQMAKDVATFLAWCAEPEHDERKKAGVRILAALFVAFLITGYYKRFRYSPLKTRQITYVK 264          
BLAST of jgi.p|Trimin1|43953 vs. uniprot
Match: A0A7S1TQH4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQH4_9STRA)

HSP 1 Score: 324 bits (830), Expect = 9.980e-108
Identity = 154/243 (63.37%), Postives = 194/243 (79.84%), Query Frame = 2
Query:   95 ASCNDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHTEEGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITYME 823
            A  +DD IP+L+ GW  +GA SS+D+ ++RRGFQVY++VC++CHS++ I+FRN V V  +E+ AKKLAE +E+ D  PND+GEMFERP KL D  PGPY NE  GRAANGGALPPDL+L+TKAR  G +YVF+LLTGY D P GK +LPGL+YNPYFAGGAIAMP PL DG VEYEDGT AT +QMAKDVS FLAWCAEPE D+RKK GV+ +  L +   +T +YKR R++P+KTR+I+Y++
Sbjct:   27 AFASDDHIPALNPGWSHNGAFSSYDYKSVRRGFQVYKEVCATCHSVEGIAFRNLVNVIFSEKQAKKLAESYEIEDG-PNDEGEMFERPGKLSDYIPGPYANEEAGRAANGGALPPDLTLITKARPNGTNYVFSLLTGYVDPPEGKAMLPGLHYNPYFAGGAIAMPAPLTDGAVEYEDGTEATASQMAKDVSTFLAWCAEPEADDRKKNGVRIIGALTVAFLLTGFYKRFRYSPLKTRQISYVK 268          
BLAST of jgi.p|Trimin1|43953 vs. uniprot
Match: A0A7S1BBA1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BBA1_9STRA)

HSP 1 Score: 323 bits (828), Expect = 2.730e-107
Identity = 152/239 (63.60%), Postives = 184/239 (76.99%), Query Frame = 2
Query:  104 NDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHTEEGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITYM 820
            ++  +    Y W   G L +FDH AIRRG+QVY++VC++CHS++ I+FRNFVGVTH+ +  K+L  E +V D  PND+GEMF+RP KL D+ P PY NE  GRAANGGA PPDLSLM KARH G DYVF+LL GY ++P GKD+LPGLYYNPYF GG IAMPPPL DGQ++YEDGTPATV+QMAKDV  FL WCAEPEHDERKK G KAV  LA  +  T +YKR RW+  KTRK++Y+
Sbjct:   39 DESIVHPAHYHWDHAGLLDTFDHKAIRRGYQVYKEVCATCHSVEQIAFRNFVGVTHSTKEMKELTAEIDVEDG-PNDEGEMFDRPGKLADKLPSPYANEEAGRAANGGAYPPDLSLMIKARHSGPDYVFSLLAGYTEAPEGKDILPGLYYNPYFDGGLIAMPPPLDDGQLDYEDGTPATVSQMAKDVVIFLNWCAEPEHDERKKEGFKAVLCLAAALVFTGFYKRFRWSIYKTRKLSYV 276          
BLAST of jgi.p|Trimin1|43953 vs. uniprot
Match: A0A024GLL4_9STRA (Cytochrome c domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GLL4_9STRA)

HSP 1 Score: 322 bits (825), Expect = 6.130e-107
Identity = 154/241 (63.90%), Postives = 186/241 (77.18%), Query Frame = 2
Query:  101 CNDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHTEEGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITYME 823
            CNDD +    YG+   G LSSFD+A++RRG+QVYR+VC+SCHS++ ISFRN VGVTHTEE  K LA + +V D  PND GEMF+RP KL D  P PY N+    AAN GA+PPDLSLM KAR GG+DY+FALLTGY D P GK+LL GLYYNPYF+GGAIAM   L DGQ++YEDGTPAT +QMAKDV+ FLAW AEPEHDERKK G+K +  +     +T YYKRL+WAP+K+RKI+Y +
Sbjct:   31 CNDDALSIPDYGFDHKGPLSSFDYASVRRGYQVYREVCASCHSLERISFRNLVGVTHTEEQVKALAADVDVEDG-PNDQGEMFDRPGKLSDPLPKPYPNDEAAAAANNGAIPPDLSLMVKARPGGVDYLFALLTGYVDPPEGKELLSGLYYNPYFSGGAIAMERQLQDGQIDYEDGTPATTSQMAKDVAVFLAWAAEPEHDERKKQGMKVLLAMGALALLTGYYKRLKWAPLKSRKISYTQ 270          
BLAST of jgi.p|Trimin1|43953 vs. uniprot
Match: A0A485LA40_9STRA (Aste57867_18449 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LA40_9STRA)

HSP 1 Score: 321 bits (823), Expect = 1.370e-106
Identity = 156/265 (58.87%), Postives = 194/265 (73.21%), Query Frame = 2
Query:   29 SIRPSVAAASXXXXXXXXXXXXASCNDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHTEEGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITYME 823
            +++ + AAA              S +DDCIP+  YG+   G  ++FD AA+RRG+QVY++VCS+CHS+  I FR+ VGVTHTE+ AK LA + +V D  PND+GEMFERP KL D  P PY N+    AAN GA+PPDLSL+ KARH G DY+FAL+TGY D+P GKD+  GL+YNPYF GGAIAMP PL DG+VEYEDGTPATV+QMAKDVS FL+W AEPEHDERKK G++    L +   +T YYKR+RWAP+KTRKI Y +
Sbjct:   10 ALKKAAAAAGGAVVGGSVLTGVTSFSDDCIPAQHYGFEHQGPFTAFDAAAVRRGYQVYKEVCSTCHSVDKIHFRHLVGVTHTEDEAKALAADIDVVDG-PNDEGEMFERPGKLSDPLPKPYANDEAASAANNGAIPPDLSLIVKARHAGADYLFALMTGYIDAPEGKDVGAGLHYNPYFGGGAIAMPAPLEDGKVEYEDGTPATVSQMAKDVSVFLSWAAEPEHDERKKMGMQWCFGLFVTALLTGYYKRMRWAPLKTRKIEYFK 273          
BLAST of jgi.p|Trimin1|43953 vs. uniprot
Match: M4C0R6_HYAAE (Cytochrome c domain-containing protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=M4C0R6_HYAAE)

HSP 1 Score: 320 bits (821), Expect = 2.480e-106
Identity = 156/238 (65.55%), Postives = 184/238 (77.31%), Query Frame = 2
Query:  104 NDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHTEEGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITY 817
            + D I +L YG+   G LSSFD+A++RRG+QVYR+VC+SCHS+  I FRN VGVTHTEE  K +A + +VTD  PND+GEMFERP KL D  P PY N+    AAN GA+PPDLSLM KARH G DY+FALLTGY D P G +LL GL+YNPYF GGAIAM   L DGQ++YEDGTP T +QMAKDVS FLAW AEPEHD RKK G++AV VLA   G+T YYKRL+WAP+KTRKI+Y
Sbjct:   32 SSDQIEALHYGFDYQGPLSSFDYASVRRGYQVYREVCASCHSLDRICFRNLVGVTHTEEELKAIAADTDVTDG-PNDEGEMFERPGKLSDPLPRPYANDEAAAAANNGAIPPDLSLMVKARHAGADYLFALLTGYVDPPEGMELLDGLHYNPYFGGGAIAMERQLQDGQIDYEDGTPCTTSQMAKDVSVFLAWAAEPEHDVRKKQGMQAVIVLAALCGLTGYYKRLKWAPLKTRKISY 268          
BLAST of jgi.p|Trimin1|43953 vs. uniprot
Match: A0A4D9D0D3_9STRA (Cytochrome c domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0D3_9STRA)

HSP 1 Score: 321 bits (822), Expect = 2.630e-106
Identity = 150/242 (61.98%), Postives = 186/242 (76.86%), Query Frame = 2
Query:   95 ASCNDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHTEEGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITYM 820
            A C+ D +PS+ YGW   G L+S+D+ A+RRGFQVYR+VC+SCH++++  FRN VGVTHTEE  KK+AE ++V D  PN +GEMFERP KL D+ PGPY N+   RAAN GA PPDLSL+TKAR GG+DY+FALLTGY D P GK +L GL YNPYF GGAIAM   L DGQ+EYEDGTPAT +QM+KDV+ FLAW AEPEHD RKK GV+ +  L + + +T +YKR RW+P+KT K  Y+
Sbjct:   41 AVCSADHVPSIDYGWNHHGLLASYDYPAVRRGFQVYREVCASCHALEHTYFRNLVGVTHTEEEVKKIAESYDVVDG-PNAEGEMFERPGKLSDKIPGPYANKEAARAANNGAYPPDLSLITKARPGGVDYIFALLTGYIDPPEGKAILSGLNYNPYFPGGAIAMARQLQDGQLEYEDGTPATTSQMSKDVATFLAWAAEPEHDYRKKAGVQWIGALLVALALTGFYKRFRWSPLKTAKFHYV 281          
BLAST of jgi.p|Trimin1|43953 vs. uniprot
Match: A0A2D4CAL0_PYTIN (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAL0_PYTIN)

HSP 1 Score: 332 bits (852), Expect = 3.930e-106
Identity = 157/241 (65.15%), Postives = 191/241 (79.25%), Query Frame = 2
Query:   95 ASCNDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHTEEGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITY 817
            A+C+ D I +L+YG+   G LSSFD+A++RRG+QVY++VC++CHS++ I FRN +GVTHTEE  KK+A E +V D  PND+GEMFERP KL D  P PY N+    AAN GA+PPDLSL+ KAR GG DY+FALLTGY D P GK+LLPGLYYNPYF GGAIAM   L DGQ+EYEDGTPAT +QMAKDVS FLAW AEPEHDERKK G++ +  L+  + +T YYKRL+WAP+KTRKITY
Sbjct:   29 AACSGDQIDALNYGFDHQGPLSSFDYASVRRGYQVYKEVCATCHSVERICFRNLIGVTHTEEELKKMAAEIDVVDG-PNDEGEMFERPGKLSDPLPKPYANDEAAAAANNGAIPPDLSLIVKARPGGADYLFALLTGYVDPPEGKELLPGLYYNPYFGGGAIAMERQLRDGQIEYEDGTPATTSQMAKDVSVFLAWAAEPEHDERKKMGMQTILALSAMVLLTGYYKRLKWAPLKTRKITY 268          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|43953 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z587_9STRA2.580e-17791.48Cytochrome c1 n=2 Tax=Tribonema minus TaxID=303371... [more]
D7FVX8_ECTSI1.230e-11464.89Ubiquinol cytochrome c reductase cytochrome c1 pre... [more]
A0A7R9YFS8_9STRA4.910e-11265.84Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1TQH4_9STRA9.980e-10863.37Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1BBA1_9STRA2.730e-10763.60Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A024GLL4_9STRA6.130e-10763.90Cytochrome c domain-containing protein n=2 Tax=Alb... [more]
A0A485LA40_9STRA1.370e-10658.87Aste57867_18449 protein n=1 Tax=Aphanomyces stella... [more]
M4C0R6_HYAAE2.480e-10665.55Cytochrome c domain-containing protein n=7 Tax=Per... [more]
A0A4D9D0D3_9STRA2.630e-10661.98Cytochrome c domain-containing protein n=2 Tax=Mon... [more]
A0A2D4CAL0_PYTIN3.930e-10665.15DNA-directed RNA polymerases I and III subunit RPA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_22contigContig_22:689829..694127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|43953|CE43952_446
BiGG ReactioniMM904.YOR065W,iND750.YOR065W
BRITEko00000,ko00001,ko00002
KEGG ModuleM00151,M00152
KEGG Pathwayko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG koko:K00413
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005750,GO:0005758,GO:0005829,GO:0006091,GO:0006119,GO:0006122,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009055,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0015672,GO:0015980,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016310,GO:0016491,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033762,GO:0034220,GO:0034641,GO:0034654,GO:0042221,GO:0042773,GO:0042775,GO:0042776,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043434,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045153,GO:0045155,GO:0045275,GO:0045333,GO:0046034,GO:0046390,GO:0046483,GO:0046907,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0055086,GO:0055114,GO:0070013,GO:0070069,GO:0070469,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1902494,GO:1902600,GO:1990204,GO:1990542
Preferred nameCYC1
DescriptionCytochrome c1
COG categoryC
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2857@1|root,KOG3052@2759|Eukaryota
Evalue2.31e-116
Seed ortholog2880.D7FVX8
Hectar predicted targeting categorysignal peptide
TranscriptId44275
TrackFilteredModels1
ProteinId43953
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|43953gene_6391Tribonema minus UTEX_B_3156 geneContig_22 689829..694127 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|43953Trimin1|43953|CE43952_446Tribonema minus UTEX_B_3156 polypeptideContig_22 689836..693958 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6391_1exon_6391_1Tribonema minus UTEX_B_3156 exonContig_22 689829..689880 +
exon_6391_2exon_6391_2Tribonema minus UTEX_B_3156 exonContig_22 690005..690129 +
exon_6391_3exon_6391_3Tribonema minus UTEX_B_3156 exonContig_22 690588..690711 +
exon_6391_4exon_6391_4Tribonema minus UTEX_B_3156 exonContig_22 690926..690999 +
exon_6391_5exon_6391_5Tribonema minus UTEX_B_3156 exonContig_22 691976..692141 +
exon_6391_6exon_6391_6Tribonema minus UTEX_B_3156 exonContig_22 692700..692816 +
exon_6391_7exon_6391_7Tribonema minus UTEX_B_3156 exonContig_22 693791..694127 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6391UTR5_6391Tribonema minus UTEX_B_3156 five_prime_UTRContig_22 689829..689835 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6391CDS_6391Tribonema minus UTEX_B_3156 CDSContig_22 689836..689880 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6391UTR3_6391Tribonema minus UTEX_B_3156 three_prime_UTRContig_22 693959..694127 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6391 ID=mRNA_6391|Name=jgi.p|Trimin1|43953|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=995bp|location=Sequence derived from alignment at Contig_22:689829..694127+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCAAAGCATGTTCAGGCTAGGTATCAGGAGCATCAGGCCCTCAGTGGCAG
CGGCCAGCGCCGTTGCTGCAGCTGCTGTGGGAGCTGGAGTCGGAGCCTCT
TGCAATGACGACTGCATACCGTCGCTGTCGTACGGCTGGCCCCAAGATGG
AGCTTTGTCGTCGTTCGACCACGCTGCCATACGGCGCGGGTTCCAGGTGT
ACCGGCAGGTCTGCAGCTCGTGCCACTCCATACAGTACATCAGCTTCCGC
AACTTCGTGGGCGTGACGCACACGGAGGAGGGCGCCAAGAAGCTGGCAGA
GGAGTTTGAGGTGACGGACGCGCAGCCCAACGACGACGGCGAGATGTTCG
AGCGGCCGGCCAAGCTGTTTGACAGGTACCCGGGGCCATACAGGAACGAG
GCGGAGGGGCGCGCCGCCAACGGCGGAGCGCTGCCACCGGACCTGTCCCT
CATGACCAAGGCTCGCCACGGCGGCATCGACTACGTCTTCGCGCTCCTCA
CCGGCTACGCGGATTCGCCAGCGGGCAAGGACCTCCTGCCAGGCCTGTAC
TACAACCCGTACTTTGCGGGCGGCGCCATCGCCATGCCGCCGCCCCTCAT
GGACGGCCAGGTGGAGTACGAGGACGGCACGCCCGCCACCGTCACGCAGA
TGGCCAAGGACGTGTCCCAGTTCCTGGCGTGGTGCGCAGAGCCGGAGCAC
GACGAGCGCAAGAAGTTTGGCGTCAAAGCTGTGACGGTGCTCGCCCTCGG
CATCGGCATCACGGCGTATTACAAGCGCCTGCGGTGGGCGCCCGTCAAGA
CGCGCAAGATCACGTACATGGAGTAAGCGCGGTCGCTGCCGCATGCGCGC
TGCGTGCGAGGTTGAGCTTGGAGGACCAACAGGGCGGTCGGCTAGGGGCA
AGGCCATGATCTTCCACCCCCTCTAACCCTAGTTGCAGCGCGCGCAGGGC
GAAGGGGGTTGACCCCCTTGTGATGGAACTGCACGCATCGGACAG
back to top

protein sequence of jgi.p|Trimin1|43953

>Trimin1|43953|CE43952_446 ID=Trimin1|43953|CE43952_446|Name=jgi.p|Trimin1|43953|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=273bp
MFRLGIRSIRPSVAAASAVAAAAVGAGVGASCNDDCIPSLSYGWPQDGAL
SSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHTEEGAKKLAEEF
EVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMT
KARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDG
QVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIG
ITAYYKRLRWAPVKTRKITYME*
back to top

mRNA from alignment at Contig_22:689829..694127+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6391 ID=mRNA_6391|Name=jgi.p|Trimin1|43953|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4299bp|location=Sequence derived from alignment at Contig_22:689829..694127+ (Tribonema minus UTEX_B_3156 )
GCAAAGCATGTTCAGGCTAGGTATCAGGAGCATCAGGCCCTCAGTGGCAG CGGTGAGAGCCATGTTATGCATGCCATGGTCGCTTGCGGCATCCCACGGT GGTCATGCATGCCGGGTAGGGCACTCAGAGCCGACTGACACACAGTTGCG CTGTTGCTGCGCGATGCTGCACGCAGGCCAGCGCCGTTGCTGCAGCTGCT GTGGGAGCTGGAGTCGGAGCCTCTTGCAATGACGACTGCATACCGTCGCT GTCGTACGGCTGGCCCCAAGATGGAGCTTTGTCGTCGTTCGACCACGCTG CGTGAGTCAACCCACGCGCTCATGGTGCACTCGTATTTGAATTCGGACGG TGTGTTGGACACATTTCCGTCCTACGACCTGATTCCAGTCGCCTCTGATT ACTTACCTCGTTGTTGGTGATCTGGGTACGCTAGCAACGCCTCTAGTATC AACAAGCAGCCTGAACGGCAGCTCTCGCTGCTGCCAATGTGGGCTCGCTT CCTTCGACCACAATCATGTCGCAAACCATTCAATGCGCCAGTAGGCTTGT TCATGATGTTCAAGGCAGCGTCAGTTTTGGCCCAGCGCACCTCGCAGCAT GGGACACTTTCTTAGAGACTTGAGTACGCAGCGTGCCATGCACTCTGCGC AGTGCGGCCGCCCCTACACGCACCTGCGCCAGCTTTGCCCCGTGTGGCGT TTGCCCTCATTCAGTCTGCACTCTGCTCCTTGTCGCTGCTGCCGCCACTC GCGCCGCAGCATACGGCGCGGGTTCCAGGTGTACCGGCAGGTCTGCAGCT CGTGCCACTCCATACAGTACATCAGCTTCCGCAACTTCGTGGGCGTGACG CACACGGAGGAGGGCGCCAAGAAGCTGGCAGAGGTGAGCTGCCAATGCCA TCACCAGCCAGCATCACCCCGTGTGCGCCGCAAGCAATGGCACGGCAGCA CCTGACATGAATCCTCATTGGGTGAGCGCTGTCACGGTTGTTGCTGCGCG CACCCCGCGATCCAGCCCTCCGAGCGTGCTTCTTCGTCGAACTGACGCGC CACGCGTTGCGGTGTTCGCGTTCGCTGTTTCTCCCGCGCGCTCGCAGGAG TTTGAGGTGACGGACGCGCAGCCCAACGACGACGGCGAGATGTTCGAGCG GCCGGCCAAGCTGTTTGACAGGTGCGCGCGCGCTTGAAGTAACGGCTGTT GAAGTGGCTCGGCTGATGCTACGTGCTGCATTGGTGCTCCTCGTGAGCTG CTGTTGAGGCGGGGTTTGTCACGCCAGAAGCGGCGCGCACGCCCTATAGC CTGTTACCCATCAGAATTGGGGCCAGGGCATGTGTCAGCAGCCTTTGGAT AGTAACATTTTCGCGGAGCCTACCCCTCACAGGTGCATCACTCACCGTGG TCAAGCGATACTGCCATGCAAGCGATACTGCCTCGCACACAGCGCAACAT GCGCAGGAGGGCCTTGATAGCCATGCGCTACTGCCACGCACAGTGCTCCC AACGGTGATGCATCACTACATCCAGGACGGCACCAACTGCGTAGGTAGCT CTCGCGTCCAGAGTCTGTGCCACACACACCTTGCGCTTGGTTAATGCTAT CATCCACGAGCACAAGCGCGCTGCGCGCTCGCCACACCCCCCTCCACCCC CCATCCACTGCAGTTGTTCATAGCCTCACAGGAGCGAGCCTCTCGCTGAG CTGCCGGCGACTGCGCATTATCCCTTCTTATCAAAGTTGTTGGCATCGTC CCCTGTCAGTCGTTCGCGCGTGCACACACTGCTACGCGTTCTCCAGCACC AGGCGCGCGCCTACCCTCCCGTACATACGAATCCCTTACATACCCCATGC CGCCGCAGATACGCGGGGTCGTACAGGGACGGCGCGGAGCGGCGCGCCGC CCACAACCATACATACCCCACTTCACACACCTTACCTACCTACCCCCGTG CCGCCAAACGCATACAATTAGCCTACCTAACACATACCTTACCTACCTAA CCCATACTCCTTACCTACCTACCCCATTCAGGTACCCGGGGCCATACAGG AATATGCGCGCGTCCAACAGCATACATACCCTACCTAACACACCTTACCT ACCTACCCCACACACGTTACCTATCTACAAAACCCCGCCCCCCCCAGGTA CCCGGGGCCATACAGGAACGAGGCGGAGGGGCGCGCCGCCAACGGCGGAG CGCTGCCACCGGACCTGTCCCTCATGACCAAGGCTCGCCACGGCGGCATC GACTACGTCTTCGCGCTCCTCACCGGCTACGCGGATTCGCCAGCGGGCAA GGACCTCCTGCCAGTGAGCCGCGCCGCTCTGCTTTTCACTGTGTTGAAGT AAAGTGTTGATGTTCTGTGCGGCAGAGCTCAGCTTGTGTTGTGCTGCATG CTGGCAGCTATGACTAGCTGTGTGTGCGGTGTATTTCCATGTGGCCTCAG AGCGGCGGCGATGGCGGCCGCGGCGGCGGCGGCGGCGGCGGCGTATAAGC GGGTGGCCGGGTCTGGCACGTACTGCTGTGTGTGGTGATGCTCAGCCAAA TGTCAAGTGGAATATGATGGTGCCACCTGCTCCCATGTCCCCCATTTTGT GTGCGCTTGCGTCTTTTTGCTCAGCGACACCGCCTCTGTCACGCCCCCCC CCCCCCCACACCCGCAATCTGCGCATTTCAACAACAGGGCCTCTACTACA ACCCGTACTTTGCGGGCGGCGCCATCGCCATGCCAACCTCTTTCAGTTGA TCGCTGACACCCCCCCCCCCCCCTCAAGTCGCTGACGCCCCCCCCCCCCC CCTCTACAATGGGCTATTCTCACAGATGCTTGTCAACTTGTCATCATCGT TTGTGTTGCTGTTTTCCACAGGGCCTGTACTACAACCCGTACTTTGCGGG CGGCGCCATCGCCATGCCGCCGCCCCTCATGGACGGCCAGGTGGAGTACG AGGACGGCACGCCCGCCACCGTCACGCAGATGGCCAAGGTGAGAGCCTTC ATGTAGCGGCCATCTGCAGATTTTCCCTTCAGTGAGCACCATGGCGCCCT GAAGGCCAATGAAAGAAGGAAAATGGCGCTGTGCATGTCAGTGACTCCCT AATATCGTGAGGGCGGCTTGCCCGCCACCGGCACGCCGATGGCCAAGGTG CGCCATTAAAGCTTGCACACAGAAGTCTGTTGACTACTGTGGATACGGTG GCACTGTCTGACTCGTGGCCATTTGCCGCAGCGGCGGCGACCACGGTCAT TGGTGGAAGGCATTCAACTTGACGTCTAACCACACCTTGTCACCAAGGTG CACACGTCCCGCCAGCCCTGACCCTGACCATAGGTCAGAGCATCTCCATT TGTGCCGCAACACCGTGACCGTTGTGATTTGCGCTGTCCCCAACCCTAAC TCTGACCCCGATCTAGCTCTCACCCTGATGTCGTCTCAATCCTAAGCTTT GCGGGCCGGAGGCCGTGTTGCATGGGTGGGGCTGCATTCACTTTGAAGTG TAGCGTTGCGGTTTTGAGGCATGAGTGGGGTGGGGACGCGCTAAGTGTTC AGGGTTAGCTGACTTCTACCCTGGCGCTGCAGTGTGGCTCGCGTGTCTGT AGGGTTTGGATTGGGGTTAGGGGTGGGGCGGGAGGCCACTGAAGCTGAGT AGCACAGCCAGCCGTAGACTCAGGAGCAGGTTCGGCTTGACCTTCACGTT ACAGGTGCGAACCGCTGATGCCAATCTATAGCAGCTGATGATCTGTCACC GCCGCTCAGATCAATAAATGGGATTCGCCTGTATGTCAGAAAGCAGAAAT ACTGCGATAGCTGGGTCTTCCGGTGCTGAGCATGAGGATAGCTGTTTTTT TTAATGGCTGACAAGCATCCGAATAGCTGTGGCCGATCAGTAGCAGCTGA CGAGCTGCCACCACCGACCCCCCCCCCCCCCCCCCTCCCCCCCAATCACG CCCCCCCCCCAGGACGTGTCCCAGTTCCTGGCGTGGTGCGCAGAGCCGGA GCACGACGAGCGCAAGAAGTTTGGCGTCAAAGCTGTGACGGTGCTCGCCC TCGGCATCGGCATCACGGCGTATTACAAGCGCCTGCGGTGGGCGCCCGTC AAGACGCGCAAGATCACGTACATGGAGTAAGCGCGGTCGCTGCCGCATGC GCGCTGCGTGCGAGGTTGAGCTTGGAGGACCAACAGGGCGGTCGGCTAGG GGCAAGGCCATGATCTTCCACCCCCTCTAACCCTAGTTGCAGCGCGCGCA GGGCGAAGGGGGTTGACCCCCTTGTGATGGAACTGCACGCATCGGACAG
back to top

Coding sequence (CDS) from alignment at Contig_22:689829..694127+

>mRNA_6391 ID=mRNA_6391|Name=jgi.p|Trimin1|43953|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=819bp|location=Sequence derived from alignment at Contig_22:689829..694127+ (Tribonema minus UTEX_B_3156 )
ATGTTCAGGCTAGGTATCAGGAGCATCAGGCCCTCAGTGGCAGCGGCCAG
CGCCGTTGCTGCAGCTGCTGTGGGAGCTGGAGTCGGAGCCTCTTGCAATG
ACGACTGCATACCGTCGCTGTCGTACGGCTGGCCCCAAGATGGAGCTTTG
TCGTCGTTCGACCACGCTGCCATACGGCGCGGGTTCCAGGTGTACCGGCA
GGTCTGCAGCTCGTGCCACTCCATACAGTACATCAGCTTCCGCAACTTCG
TGGGCGTGACGCACACGGAGGAGGGCGCCAAGAAGCTGGCAGAGGAGTTT
GAGGTGACGGACGCGCAGCCCAACGACGACGGCGAGATGTTCGAGCGGCC
GGCCAAGCTGTTTGACAGGTACCCGGGGCCATACAGGAACGAGGCGGAGG
GGCGCGCCGCCAACGGCGGAGCGCTGCCACCGGACCTGTCCCTCATGACC
AAGGCTCGCCACGGCGGCATCGACTACGTCTTCGCGCTCCTCACCGGCTA
CGCGGATTCGCCAGCGGGCAAGGACCTCCTGCCAGGCCTGTACTACAACC
CGTACTTTGCGGGCGGCGCCATCGCCATGCCGCCGCCCCTCATGGACGGC
CAGGTGGAGTACGAGGACGGCACGCCCGCCACCGTCACGCAGATGGCCAA
GGACGTGTCCCAGTTCCTGGCGTGGTGCGCAGAGCCGGAGCACGACGAGC
GCAAGAAGTTTGGCGTCAAAGCTGTGACGGTGCTCGCCCTCGGCATCGGC
ATCACGGCGTATTACAAGCGCCTGCGGTGGGCGCCCGTCAAGACGCGCAA
GATCACGTACATGGAGTAA
back to top