mRNA_6323 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152066
Unique NamemRNA_6323
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|152066 vs. uniprot
Match: A0A836CIX6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIX6_9STRA)

HSP 1 Score: 126 bits (317), Expect = 4.160e-37
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 QCSLCEANYDPASLTAAVTVKRVLDARQSWGVDVSSKRFSAPSLLYSPAKLCKFCSQFFPS 183
            QCSLCEANYDPASLTAAVTVKRVLDARQSWGVDVSSKRFSAPSLLYSPAKLCKFCSQFFPS
Sbjct:    1 QCSLCEANYDPASLTAAVTVKRVLDARQSWGVDVSSKRFSAPSLLYSPAKLCKFCSQFFPS 61
[Close]
BLAST of jgi.p|Trimin1|152066 vs. uniprot
Match: H3HDU8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HDU8_PHYRM)

HSP 1 Score: 55.8 bits (133), Expect = 1.290e-7
Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:    4 CSLCEANYDPASLTAAVTVKRVLDARQSWGVDVSSKRFSAPSLLYSPAKLCKF 162
            C+LCE  +  ASL   V +KR+ D R+ WGV   SK+F+APS LYS A +  F
Sbjct:    9 CALCERRFMRASLPGVVVMKRIYDLRRKWGVIQDSKKFNAPSALYSTATILTF 61
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152066 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CIX6_9STRA4.160e-37100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
H3HDU8_PHYRM1.290e-749.06Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_22contigContig_22:99749..99931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152066|gw1.22.178.1
Max annot lvl121069|Pythiales
EggNOG OGs2BJQC@1|root,2S1GU@2759|Eukaryota,1MEQG@121069|Pythiales
Evalue3.72e-09
Seed ortholog42099.EPrPV00000017263
Hectar predicted targeting categoryother localisation
TranscriptId152388
TrackFilteredModels1
ProteinId152066
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152066gene_6323Tribonema minus UTEX_B_3156 geneContig_22 99749..99931 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6323_1exon_6323_1Tribonema minus UTEX_B_3156 exonContig_22 99749..99931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6323CDS_6323Tribonema minus UTEX_B_3156 CDSContig_22 99749..99931 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152066Trimin1|152066|gw1.22.178.1Tribonema minus UTEX_B_3156 polypeptideContig_22 99749..99931 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6323 ID=mRNA_6323|Name=jgi.p|Trimin1|152066|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=183bp|location=Sequence derived from alignment at Contig_22:99749..99931+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAATGCTCCCTATGTGAAGCCAACTACGATCCCGCCTCGCTCACAGCGGC
AGTCACTGTGAAACGGGTGCTTGATGCGAGGCAGTCCTGGGGCGTGGATG
TATCCAGCAAGCGGTTCTCGGCACCCAGCCTGCTCTACTCCCCGGCCAAA
CTATGCAAATTTTGTAGTCAATTCTTTCCCTCG
back to top

protein sequence of jgi.p|Trimin1|152066

>Trimin1|152066|gw1.22.178.1 ID=Trimin1|152066|gw1.22.178.1|Name=jgi.p|Trimin1|152066|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=61bp
QCSLCEANYDPASLTAAVTVKRVLDARQSWGVDVSSKRFSAPSLLYSPAK
LCKFCSQFFPS
back to top

mRNA from alignment at Contig_22:99749..99931+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6323 ID=mRNA_6323|Name=jgi.p|Trimin1|152066|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=183bp|location=Sequence derived from alignment at Contig_22:99749..99931+ (Tribonema minus UTEX_B_3156 )
CAATGCTCCCTATGTGAAGCCAACTACGATCCCGCCTCGCTCACAGCGGC
AGTCACTGTGAAACGGGTGCTTGATGCGAGGCAGTCCTGGGGCGTGGATG
TATCCAGCAAGCGGTTCTCGGCACCCAGCCTGCTCTACTCCCCGGCCAAA
CTATGCAAATTTTGTAGTCAATTCTTTCCCTCG
back to top

Coding sequence (CDS) from alignment at Contig_22:99749..99931+

>mRNA_6323 ID=mRNA_6323|Name=jgi.p|Trimin1|152066|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=183bp|location=Sequence derived from alignment at Contig_22:99749..99931+ (Tribonema minus UTEX_B_3156 )
CAATGCTCCCTATGTGAAGCCAACTACGATCCCGCCTCGCTCACAGCGGC
AGTCACTGTGAAACGGGTGCTTGATGCGAGGCAGTCCTGGGGCGTGGATG
TATCCAGCAAGCGGTTCTCGGCACCCAGCCTGCTCTACTCCCCGGCCAAA
CTATGCAAATTTTGTAGTCAATTCTTTCCCTCG
back to top