mRNA_6312 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|140597
Unique NamemRNA_6312
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|140597 vs. uniprot
Match: A0A835YT60_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT60_9STRA)

HSP 1 Score: 568 bits (1463), Expect = 6.550e-205
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 1
Query:    1 LHVGVVDDESPGEREGQIGANFGVIVKYQALSDLGGKYQYLVKQYLDGGKDVXXXXXXXXXGYSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDGNDTDTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGGDKAQWIRDAFDAVVNQFTRVEQCNWFLINKAGDWDLNSDSERHAFGDSLNEYSW 825
            LHVGVVDDESPGEREGQIGANFGVIVKYQALSDLGGKYQYLVKQYLDGGKDVXXXXXXXXXGYSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDGNDTDTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGGDKAQWIRDAFDAVVNQFTRVEQCNWFLINKAGDWDLNSDSERHAFGDSLNEYSW
Sbjct:    1 LHVGVVDDESPGEREGQIGANFGVIVKYQALSDLGGKYQYLVKQYLDGGKDVXXXXXXXXXGYSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDGNDTDTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGGDKAQWIRDAFDAVVNQFTRVEQCNWFLINKAGDWDLNSDSERHAFGDSLNEYSW 275          
BLAST of jgi.p|Trimin1|140597 vs. uniprot
Match: A0A835YVC0_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC0_9STRA)

HSP 1 Score: 383 bits (983), Expect = 4.810e-132
Identity = 177/258 (68.60%), Postives = 207/258 (80.23%), Query Frame = 1
Query:   55 GANFGVIVKYQALSDLGGKYQYLVKQYLDGGKDVXXXXXXXXXGYSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDGNDTDTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGG-DKAQWIRDAFDAVVNQFTRVEQCNWFLINKAGDWDLNSDSERHAFGDSLNEYSW 825
            GA F  +VKYQ+++ L G+Y+YLVK YLD GK V          Y+NLQ I DG FD  LN FIDD  + GN+Q+WIR +HEFNGDWY WGTYR+GN    FKRAF+HV  VF+ RGAN KFQL YNC NP +DG SF +W+PGGDVVDMILCSGYNRAG+DS+H SWQSFS+V+SSGYYKMA+LDGGKPLGVAETSST+W    K QWI+DAF+A+VN+FTRVEQCNWFLINK G+W LNSD ERHAFGDS+N+YSW
Sbjct:    1 GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNGNSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKDGNWGLNSDDERHAFGDSINQYSW 258          
BLAST of jgi.p|Trimin1|140597 vs. uniprot
Match: A0A835YS57_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS57_9STRA)

HSP 1 Score: 362 bits (928), Expect = 2.630e-121
Identity = 175/277 (63.18%), Postives = 207/277 (74.73%), Query Frame = 1
Query:    1 LHVGVVDDES--PGEREGQIGANFGVIVKYQALSDLGGKYQYLVKQYLDGGKDVXXXXXXXXXGYSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDGNDTDTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGG-DKAQWIRDAFDAVVNQFTRVEQCNWFLINKAGDWDLNSDSERHAFGDSLNEYS 822
            L +G+ DD S  P +RE  IGA F  + KYQ +SDL GKYQYLV+ +L+ G+ V          Y +LQ I DGAFD  LN FID+  + GN+ +WIR +HEFNGDWYP GTYR GN +D FKRA+RHVV VFR RGAN KFQLAYNCDN  +D KSF  W+PG   VDM++CSGYNRAG+D+DH  WQSFS+V+SSGY KMA+L G KPLG+AE SST+W    K QWIRDAFDAVV +FTRV Q NWFLINK GDW LNSD+ER AFGDS+N+YS
Sbjct:   54 LLIGIADDSSISPTDREKLIGAKFQTVQKYQKVSDLPGKYQYLVEPHLNAGRTVVLMTEFDDGSYVDLQAIGDGAFDSYLNKFIDEWQADGNRTVWIRPMHEFNGDWYPCGTYRTGNSSDKFKRAYRHVVSVFRNRGANAKFQLAYNCDNARNDSKSFGVWWPGKYAVDMVVCSGYNRAGLDADHQKWQSFSDVYSSGYNKMAALPGLKPLGIAEMSSTTWQSYSKPQWIRDAFDAVVTKFTRVRQLNWFLINKEGDWGLNSDAERQAFGDSVNKYS 330          
BLAST of jgi.p|Trimin1|140597 vs. uniprot
Match: A0A835YZR6_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZR6_9STRA)

HSP 1 Score: 328 bits (840), Expect = 4.260e-104
Identity = 164/310 (52.90%), Postives = 203/310 (65.48%), Query Frame = 1
Query:    7 VGVVDDES--PGEREGQIGANFGVIVKYQALSDLGGKYQYLVKQYLDGGKDVXXXXXXXXXGYSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDGNDTDTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSW-GGDKAQWIRDAFDAVVNQFTRV----------------------------------EQCNWFLINKAG-DWDLNSDSERHAFGDSLNEYS 822
            +G++DD S  P  RE  IGA F V+VKYQ + +L GKY+YL+K +LD  + V          Y+NLQ I DGAFD  LN FID+  + GN+ MWIR +HEFNGDWY WGTYR GND   F+RAF+HV  VF+ RGA  K QL+YNCDN   + ++F +W+PG DVVDM+LCSGYNRAG DS H SW+SF++VF+ GY +MA+L G KPLGVAETSST+W    K QWI+DAF AVVN+FTR+                                   Q NWFLINK   +W LNSD+ER AFGDS+N+YS
Sbjct:  274 IGIIDDASITPTSRESLIGAKFQVVVKYQKVKELPGKYKYLLKPHLDANRTVVLVPEFYDGSYANLQAIGDGAFDSYLNKFIDEWKADGNRAMWIRPMHEFNGDWYSWGTYRSGNDRAKFQRAFKHVAYVFKNRGAQAKMQLSYNCDNARGENRNFTEWFPGTDVVDMVLCSGYNRAGTDSYHMSWKSFTDVFTPGYNRMAALSGNKPLGVAETSSTTWQSNSKPQWIKDAFYAVVNKFTRIXXXXXXXXXXXXXXEQFDCIYINKGDTFNCGLDTSQHNWFLINKGSLNWGLNSDAERKAFGDSINKYS 583          
BLAST of jgi.p|Trimin1|140597 vs. uniprot
Match: A0A835YW31_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW31_9STRA)

HSP 1 Score: 282 bits (721), Expect = 1.620e-92
Identity = 132/239 (55.23%), Postives = 165/239 (69.04%), Query Frame = 1
Query:  112 YQYLVKQYLDGGKDVXXXXXXXXXGYSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDG-NDTDTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGGDKAQWIRDAFDAVVNQFTRVEQCNWFLINKAGDWDLNSDSERHAFGDSLNEYSW 825
            Y   VK  LD   DV          Y+NLQ+I DG +D  LN FID     GN+++ IR +HEFNGDWYPWGT+R G N  D FKRAF+HV  VF+ RGANVK QLAYNCD+  +DG  F DWYPG DVVD+ILCS YNR+G++     W+SF EVF  GY +MAS+ G KPLG+ ET ST WGGDK  WI DAF+ +V ++TRV++C+W L NK GDWDLN+D +  AFGD + ++ +
Sbjct:    2 YWNTVKPALDKVDDVVLVVQFDTYDYTNLQEIGDGRYDASLNQFIDAWKDDGNRRLSIRPMHEFNGDWYPWGTFRGGGNSKDNFKRAFQHVAGVFKRRGANVKMQLAYNCDSAQNDGSPFADWYPGDDVVDIILCSAYNRSGLEGH--GWESFDEVFGGGYDRMASIPGNKPLGLGETGSTDWGGDKPAWISDAFNQLVYKYTRVQECHWLLENKEGDWDLNTDGDVWAFGDGMRKFEF 238          
BLAST of jgi.p|Trimin1|140597 vs. uniprot
Match: A0A836CGL5_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGL5_9STRA)

HSP 1 Score: 276 bits (706), Expect = 3.320e-88
Identity = 140/279 (50.18%), Postives = 187/279 (67.03%), Query Frame = 1
Query:    1 LHVGVVDDESPGEREGQIGANFGVIVKYQALSDLGGKYQYLVKQYLDGG-KDVXXXXXXXXXGYSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDGNDTDT-FKRAFRHVVDVFRGRGANVKFQLAYNCDN-PNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSW-GGDKAQWIRDAFDAVVNQFTRVEQCNWFLINKA-GDWDLNSDSERHAFGDSLNEYS 822
            L +G+ D+  P  R+ ++GA F  +VK+Q++  +  +Y +LVK +LD G + V          ++NL+QI +G +D  L  F+D++M  GN+++W+R LHEFNGDWYPWGTYR G++T   FKRA+RHV  +   +GAN+KFQLAYNC N  ND    F DW+PG   VDM++CSGYNRAG D+DH  W +F EVF + Y +M +L G KPLGV ETS  ++   DKAQWIRDAF   VN + R+E   WFL NK  G WDLNS  E  AFG+SL EY+
Sbjct:   70 LMIGLSDNMLPVARQAELGAKFQAVVKFQSVQKM--RYPFLVKPHLDAGFQSVMVMEFLDATRHTNLKQIANGLYDKYLYKFVDELMDDGNREVWVRPLHEFNGDWYPWGTYRGGDNTKRMFKRAWRHVHWILTNKGANIKFQLAYNCVNGQNDQTTPFLDWWPGEQYVDMVVCSGYNRAGSDADHQQWLTFPEVFGAAYEQMLTLPGMKPLGVGETSCNNFEDNDKAQWIRDAFYDFVNTYPRIEHVTWFLQNKNDGRWDLNSPEEIAAFGESLIEYT 346          
BLAST of jgi.p|Trimin1|140597 vs. uniprot
Match: A0A835YXK1_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXK1_9STRA)

HSP 1 Score: 266 bits (681), Expect = 2.560e-86
Identity = 127/217 (58.53%), Postives = 159/217 (73.27%), Query Frame = 1
Query:  187 YSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDG-NDTDTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGG-DKAQWIRDAFDAVVNQFTRVEQCNWFLINK--AGDWDLNSDSERHAFGDSLNEYSW 825
            Y +LQ + +G +D QLN FID+  + GN+++ IR +HEFNGDWY WGTYR G N    FKRA+ HV  +FR RGAN   QL+YNC NPNDD  SF +WYPG + VDM+LCS YNRAG+DSDH  W++F +VF  GY +MA+L G K LGVAE  +TSWGG  KAQWIRDAF A+VNQ+TRVE+  W L NK  +GDW+LN+ SE  AFG S+ +Y +
Sbjct:   13 YRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKYEY 229          
BLAST of jgi.p|Trimin1|140597 vs. uniprot
Match: A0A836CJI7_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJI7_9STRA)

HSP 1 Score: 275 bits (702), Expect = 8.390e-85
Identity = 141/279 (50.54%), Postives = 183/279 (65.59%), Query Frame = 1
Query:    1 LHVGVVDDESPGEREGQIGANFGVIVKYQALSDLGGKYQYLVKQYLDGGKDVXXXXXXXXXGY-SNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDGNDT-DTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKS-FHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGG-DKAQWIRDAFDAVVNQFTRVEQCNWFLINKA-GDWDLNSDSERHAFGDSLNEYS 822
            L V ++D+  P  R+ ++GA F V+VK+Q +  +  +Y +LVK YLD G +V            +NLQ+I DG +D  L  FID++   GN+ +WIR +HEFNGDWYPWGTY  G +T D F RA++H+ DVF  + ANVKFQLAYNCDN  DD  + F  W+PG + VDM++CSGYNRAG D +H  W +F +V+++ Y +MA+L G KPLGV E S   +G  DKAQWIRDAF      FTRV Q  WFL NK  G WDLN+  E  AFGD L EY+
Sbjct:   35 LKVAILDEMEPNARQAELGAQFQVVVKFQPVQQM--RYPFLVKPYLDQGYEVVMVTEFLDDVLVTNLQEIGDGLYDDYLYQFIDELKDDGNRAVWIRPMHEFNGDWYPWGTYHGGTNTIDNFIRAWQHIHDVFTVKKANVKFQLAYNCDNAQDDVTTPFTAWWPGDEYVDMVVCSGYNRAGSDENHMEWLTFQDVYANAYNQMAALPGLKPLGVGEMSCNDFGDYDKAQWIRDAFADFDTTFTRVTQVTWFLQNKDDGRWDLNTPDEIQAFGDCLREYT 311          
BLAST of jgi.p|Trimin1|140597 vs. uniprot
Match: A0A835YWE9_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWE9_9STRA)

HSP 1 Score: 258 bits (658), Expect = 2.130e-81
Identity = 134/278 (48.20%), Postives = 174/278 (62.59%), Query Frame = 1
Query:    1 LHVGVVDDESPGEREGQIGANFGVIVKYQALSDLGGKYQYLVKQYLDGGKDVXXXXXXXXXGYSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDGNDT-DTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKS-FHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGG-DKAQWIRDAFDAVVNQFTRVEQCNWFLINKA-GDWDLNSDSERHAFGDSLNEYS 822
            L VG+ D   P  RE ++ A F V+ K+  +  +  +Y +LVK YLD G  V           +NL+QI DG +D  L  F D+++  GN+++W+R +HEFNGDWYPWGTY  G +T   F RA+RHV  V   +GAN+KFQL YNC N  +D K+ F  W+PG DVVDM++CS YNRAG D  HT WQ++ +VF  GY +MA+L    PLGV E  +    G DKA WIRDAF A    + RVEQ  WFL +K  G+WDLNS  E  AF DSL +Y+
Sbjct:   28 LDVGIADILEPVYREEELNAQFQVVTKFGFIKTM--RYPFLVKNYLDQGFKVVLVVQFLDTLTTNLKQIGDGLYDKYLYKFADELIKDGNREVWVRPMHEFNGDWYPWGTYMGGTNTIQNFIRAYRHVYQVLTAKGANIKFQLGYNCVNGANDKKTPFSAWWPGDDVVDMVVCSAYNRAGTDQFHTQWQTWPDVFQLGYDQMAALPTSAPLGVGEMGTVGMAGEDKAGWIRDAFAAFPTLYPRVEQITWFLEDKDDGEWDLNSADEIEAFRDSLLQYT 303          
BLAST of jgi.p|Trimin1|140597 vs. uniprot
Match: A0A835Z6S0_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6S0_9STRA)

HSP 1 Score: 262 bits (670), Expect = 2.530e-76
Identity = 136/280 (48.57%), Postives = 178/280 (63.57%), Query Frame = 1
Query:    1 LHVGVVDDESPGEREGQIGANFGVIVKYQALSDLGGKYQYLVKQYLDGGKDVXXXXXXXXXGY-SNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDG-NDTDTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKS-FHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGG-DKAQWIRDAFDAVVNQFTRVEQCNWFLINKAGD--WDLNSDSERHAFGDSLNEYS 822
            + + ++D+  P  R+ ++GA F V+VK+Q +  +  +Y +LVK YLD G  V            +NL QI  G +D  L  F+D+  + GNQ++WIR +HEFNGDWYPWGTY  G N    F RA+RHV DVF  + ANVKFQLAYNCDN  DD  + F DW+PG + VDM++CSGYNRAG D +H  W +F +V+ + Y +M +L G KPLGV E S   + G DKAQWI DAF   VN + RV+Q  WFL NK GD  WDLNS  +  AF + L  Y+
Sbjct: 1038 VDIAILDEMEPNARQAELGAQFQVVVKFQPVQSM--RYPFLVKPYLDQGFQVVMVTEFLDNELLTNLWQIGSGKYDDYLYQFMDEHKADGNQEVWIRPMHEFNGDWYPWGTYHGGFNTKKNFIRAWRHVHDVFTVKKANVKFQLAYNCDNGQDDVTTPFTDWWPGMNYVDMVVCSGYNRAGTDENHMEWLTFQDVYGAAYEQMLALPGYKPLGVGEMSCNDFEGYDKAQWITDAFYDFVNTYPRVKQVTWFLQNKEGDGRWDLNSPEQIAAFANGLKLYT 1315          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|140597 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YT60_9STRA6.550e-205100.00Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]
A0A835YVC0_9STRA4.810e-13268.60Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]
A0A835YS57_9STRA2.630e-12163.18Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835YZR6_9STRA4.260e-10452.90GH26 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YW31_9STRA1.620e-9255.23Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]
A0A836CGL5_9STRA3.320e-8850.18Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835YXK1_9STRA2.560e-8658.53Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A836CJI7_9STRA8.390e-8550.54Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835YWE9_9STRA2.130e-8148.20Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835Z6S0_9STRA2.530e-7648.57GH26 domain-containing protein n=1 Tax=Tribonema m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_47contigContig_47:941833..944701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|140597|gw1.47.107.1
CAZyGH5,GH9
BRITEko00000,ko00001,ko01000
KEGG ReactionR06200,R11307,R11308
KEGG Pathwayko00500,ko01100,map00500,map01100
KEGG koko:K01179
EC3.2.1.4
GOsGO:0003674,GO:0003824,GO:0004553,GO:0008810,GO:0016787,GO:0016798
Preferred namecelH
DescriptionBelongs to the glycosyl hydrolase 26 family
COG categoryG
Max annot lvl186801|Clostridia
EggNOG OGsCOG4124@1|root,COG4124@2|Bacteria,1U8S3@1239|Firmicutes,24CGR@186801|Clostridia,36HBM@31979|Clostridiaceae
Evalue6.43e-43
Seed ortholog755731.Clo1100_1316
Hectar predicted targeting categoryother localisation
TranscriptId140919
TrackFilteredModels1
ProteinId140597
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140597gene_6312Tribonema minus UTEX_B_3156 geneContig_47 941833..944701 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140597Trimin1|140597|gw1.47.107.1Tribonema minus UTEX_B_3156 polypeptideContig_47 941833..944701 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6312_5exon_6312_5Tribonema minus UTEX_B_3156 exonContig_47 941833..941926 -
exon_6312_4exon_6312_4Tribonema minus UTEX_B_3156 exonContig_47 942672..942884 -
exon_6312_3exon_6312_3Tribonema minus UTEX_B_3156 exonContig_47 943210..943420 -
exon_6312_2exon_6312_2Tribonema minus UTEX_B_3156 exonContig_47 943731..943986 -
exon_6312_1exon_6312_1Tribonema minus UTEX_B_3156 exonContig_47 944651..944701 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6312CDS_6312Tribonema minus UTEX_B_3156 CDSContig_47 944651..944701 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6312 ID=mRNA_6312|Name=jgi.p|Trimin1|140597|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=825bp|location=Sequence derived from alignment at Contig_47:941833..944701- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTTCACGTCGGCGTCGTGGACGACGAGTCTCCTGGCGAGAGAGAGGGCCA
GATCGGCGCGAATTTCGGCGTCATCGTCAAGTACCAGGCGCTCTCCGACC
TCGGCGGCAAGTACCAGTACCTCGTCAAGCAGTACCTGGACGGCGGCAAG
GACGTGGTTCTCGTAATTGAGTTCCTAGACGGAGGCTACAGTAACCTGCA
GCAGATCATTGACGGCGCCTTTGACGGCCAGCTGAACGGCTTCATCGACG
ACATGATGAGCCACGGCAACCAACAGATGTGGATCCGCCACCTCCACGAG
TTCAACGGCGACTGGTACCCGTGGGGTACGTACCGCGACGGCAACGACAC
GGACACGTTCAAGCGCGCGTTCAGGCACGTCGTAGACGTCTTCCGCGGCC
GCGGCGCCAACGTCAAGTTCCAGCTCGCCTACAACTGCGACAACCCCAAT
GACGACGGCAAGAGCTTCCACGACTGGTACCCGGGAGGTGACGTCGTGGA
CATGATCCTGTGCAGCGGCTACAACCGCGCCGGCGTCGACTCCGACCACA
CCTCGTGGCAGTCCTTCAGCGAGGTCTTTTCCAGCGGCTACTACAAGATG
GCATCGCTCGACGGCGGCAAGCCCCTGGGCGTCGCCGAGACGAGCTCCAC
CAGCTGGGGCGGCGACAAGGCGCAGTGGATCCGCGACGCGTTTGACGCCG
TCGTCAACCAGTTCACGCGCGTCGAGCAGTGCAACTGGTTCCTCATCAAC
AAGGCCGGCGATTGGGACCTCAACTCCGACTCCGAGCGCCACGCTTTTGG
CGACTCCCTCAACGAGTACAGCTGG
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protein sequence of jgi.p|Trimin1|140597

>Trimin1|140597|gw1.47.107.1 ID=Trimin1|140597|gw1.47.107.1|Name=jgi.p|Trimin1|140597|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=275bp
LHVGVVDDESPGEREGQIGANFGVIVKYQALSDLGGKYQYLVKQYLDGGK
DVVLVIEFLDGGYSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHE
FNGDWYPWGTYRDGNDTDTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPN
DDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKM
ASLDGGKPLGVAETSSTSWGGDKAQWIRDAFDAVVNQFTRVEQCNWFLIN
KAGDWDLNSDSERHAFGDSLNEYSW
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mRNA from alignment at Contig_47:941833..944701-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6312 ID=mRNA_6312|Name=jgi.p|Trimin1|140597|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2869bp|location=Sequence derived from alignment at Contig_47:941833..944701- (Tribonema minus UTEX_B_3156 )
CTTCACGTCGGCGTCGTGGACGACGAGTCTCCTGGCGAGAGAGAGGGCCA GGTGCGTGCTGCTTCTGCTGTGTTTGCTCACTCTGTCTGGTGGAATGAAC GAGGCTTAACGAACATATCAAAGCACAGCCGCTCTTGATTGTCGTTAATC ATGCTGCCGTGTAGGCCAGCGTTCCGCAAGGGGTTTTATTACGTTCATTG AAAATGGCACATAGTGTACACACACAAACCATACCAGTGTAGGTGCAGTA CTTTGTGCAGCTGTCATTTCTAAGCCACGGACACTATAGGCATGGTGACA TGCATGTGCTACAATGCTCAGCACGAGCAGGGATGTAGCACCCAAAAAAT GTCATACTGTAGTGCTCAGATTCTGGTCTGTACAACGCATGCGCATTTCA TAGCATGGAAGTGTATGCTGACTGCTTCTGCAATGCCTCACAGCACTCTG TTGGAGTCAGGCACCTGAGGGCCACACTTACAGCCCTTTCTTCACAAGGC TCTCAATTACCTCTGTGTACCGCTCCTGGCACATTGACACGCCCACGACC CTGCCCTGCACTCCGATCTCATCACAACAATCCTCCTCCTTCCCTGCCCA CAAAGCAGCGCCGGCCTCCGCATTCCTTCACATGAGAGCGCGTATATGAA GCCTTTCCATGTACATAGCTGTTCCCCCCCCCCCCCGCCCCCCCCCGCTA CATTCCACTACGCAGATCGGCGCGAATTTCGGCGTCATCGTCAAGTACCA GGCGCTCTCCGACCTCGGCGGCAAGTACCAGTACCTCGTCAAGCAGTACC TGGACGGCGGCAAGGACGTGGTTCTCGTAATTGAGTTCCTAGACGGAGGC TACAGTAACCTGCAGCAGATCATTGACGGCGCCTTTGACGGCCAGCTGAA CGGCTTCATCGACGACATGATGAGCCACGGCAACCAACAGATGTGGATCC GCCACCTCCACGAGTTCAACGGTGAGAGAGATACAAAAACTTGAAGTTGA ATTGATTGTGAAGCATGTACCTCAAAGTATACTGTTGCCTGCTGCTCCGT GCCGTCGCGCTGCTGCTGCGTGTCCTGCAGCGCTCCGCAGTGGCACGAGT CAGAATGATTATAACTCTTTAAAATTCCAGCCAGTTCAGAACTCCTTAGC TCCTCGCCGCCGCAAGCGACTGGCACCAGTACCACCCCTTATGTCCGCTC AGCTGCCAAACTCCAACTTGAGTGCGCCATTTCTGAACTTCAATTTGAAT GTGCTGCCGCTGCCGCTCGCTACCGCCGCAGGCGACTGGTACCCGTGGGG TACGTACCGCGACGGCAACGACACGGACACGTTCAAGCGCGCGTTCAGGC ACGTCGTAGACGTCTTCCGCGGCCGCGGCGCCAACGTCAAGTTCCAGCTC GCCTACAACTGCGACAACCCCAATGACGACGGCAAGAGCTTCCACGACTG GTACCCGGGAGGTGACGTCGTGGACATGATCCTGTGCAGCGGGTGAGTGC AACGCCTGGACTCGTGTTGGGGTGCGTCTGCACTGCTGGTGTACTCGTGG TGTACCGCATGCTGTGTGTGTGTTTTCCATGTGAGCGCGCGTGTGGCCAT GCGCTACATCTGTACTGTTGTTCTTGTGGTAGACTACATGCATACAACAC GTACATGCATGCGTGGTACCGGCGTCATGGGCAAGACCTCCGCTAGCGCT TGCACCTCACCACCACCCTCTCCTCAACCCCCTGAGACGCAAGCGCCGCT GCAGCCGCCACCATCACGACCCCTCACCCCCCCCCCTCCCCCCCCGCGCT GATCACTGCCACCGCAGCTACAACCGCGCCGGCGTCGACTCCGACCACAC CTCGTGGCAGTCCTTCAGCGAGGTCTTTTCCAGCGGCTACTACAAGATGG CATCGCTCGACGGCGGCAAGCCCCTGGGCGTCGCCGAGACGAGCTCCACC AGCTGGGGCGGCGACAAGGCGCAGTGGATCCGCGACGCGTTTGACGCCGT CGTCAACCAGTTCACGCGCGTCGAGCAGTGGTGAGTCGCAGTCGCAGTCA TGAGTCGTCACGCGTGTCGAGCAGTGGTGATTCTGAATTGCAGGGATGAG TTAGGGTTAGGGTTTAGGGTTAGGGTTAGGGTTAGGGTTAACCCTAACCC TAACCCTAAGCATGAGTCGATGGCGCTTGCGACGTTCGACGCCGTCGTCG ACCAGATTACGCGCGTCGAGCAGTGGTGAGTTGCAGTCGCAGTCACGAGT CACCGTTATGAGTCTTAGCCGCAGTCATAAGTCGATGGCGCCTGTGAGGT GTTTGTGATGCCAACAGTGGATTTGCGGCACGTTTGATGTCATTTGTAAC CAGTCTTTGCGCGCTGAGCAGTGGTGAGTCGCAGTTGCAGCTGTGAGCGG CACGCAGTTCAAGCGGTGGTGAGCGTCACGGCGTTGAAGTTGGCTGGTGG TGACGCGCCGCACCAGCTGCCGCTGAGCTCCGCCTCTGTTGGGTTGCTCT GAGACTCCGCTACGCTGGCGCAAGGTCGCCAGCCATGTTTCGACCACTTG CATTCGTGAGCCGTGCGCATTAGACAGACACACCATTAACAACAGGGCTG AGTGCCAGTGCACCCGCTTCGCCTGTTCCAAGTATTGCTTGCTCGGTGAC AGTGTCGTCATCCCCTGAAACAGCTGCACTTCGTGCGCACTTATGGCCAC ATGCATTACAAACAGCTGTAAAGCATCACCGCTCATCATGCCCCCCCCCC TCCCTCCCCCTCCCTCCATCTGCAGCAACTGGTTCCTCATCAACAAGGCC GGCGATTGGGACCTCAACTCCGACTCCGAGCGCCACGCTTTTGGCGACTC CCTCAACGAGTACAGCTGG
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Coding sequence (CDS) from alignment at Contig_47:941833..944701-

>mRNA_6312 ID=mRNA_6312|Name=jgi.p|Trimin1|140597|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=825bp|location=Sequence derived from alignment at Contig_47:941833..944701- (Tribonema minus UTEX_B_3156 )
CTTCACGTCGGCGTCGTGGACGACGAGTCTCCTGGCGAGAGAGAGGGCCA
GATCGGCGCGAATTTCGGCGTCATCGTCAAGTACCAGGCGCTCTCCGACC
TCGGCGGCAAGTACCAGTACCTCGTCAAGCAGTACCTGGACGGCGGCAAG
GACGTGGTTCTCGTAATTGAGTTCCTAGACGGAGGCTACAGTAACCTGCA
GCAGATCATTGACGGCGCCTTTGACGGCCAGCTGAACGGCTTCATCGACG
ACATGATGAGCCACGGCAACCAACAGATGTGGATCCGCCACCTCCACGAG
TTCAACGGCGACTGGTACCCGTGGGGTACGTACCGCGACGGCAACGACAC
GGACACGTTCAAGCGCGCGTTCAGGCACGTCGTAGACGTCTTCCGCGGCC
GCGGCGCCAACGTCAAGTTCCAGCTCGCCTACAACTGCGACAACCCCAAT
GACGACGGCAAGAGCTTCCACGACTGGTACCCGGGAGGTGACGTCGTGGA
CATGATCCTGTGCAGCGGCTACAACCGCGCCGGCGTCGACTCCGACCACA
CCTCGTGGCAGTCCTTCAGCGAGGTCTTTTCCAGCGGCTACTACAAGATG
GCATCGCTCGACGGCGGCAAGCCCCTGGGCGTCGCCGAGACGAGCTCCAC
CAGCTGGGGCGGCGACAAGGCGCAGTGGATCCGCGACGCGTTTGACGCCG
TCGTCAACCAGTTCACGCGCGTCGAGCAGTGCAACTGGTTCCTCATCAAC
AAGGCCGGCGATTGGGACCTCAACTCCGACTCCGAGCGCCACGCTTTTGG
CGACTCCCTCAACGAGTACAGCTGG
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