mRNA_6312 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|140597 vs. uniprot
Match: A0A835YT60_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT60_9STRA) HSP 1 Score: 568 bits (1463), Expect = 6.550e-205 Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 1 Query: 1 LHVGVVDDESPGEREGQIGANFGVIVKYQALSDLGGKYQYLVKQYLDGGKDVXXXXXXXXXGYSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDGNDTDTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGGDKAQWIRDAFDAVVNQFTRVEQCNWFLINKAGDWDLNSDSERHAFGDSLNEYSW 825 LHVGVVDDESPGEREGQIGANFGVIVKYQALSDLGGKYQYLVKQYLDGGKDVXXXXXXXXXGYSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDGNDTDTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGGDKAQWIRDAFDAVVNQFTRVEQCNWFLINKAGDWDLNSDSERHAFGDSLNEYSW Sbjct: 1 LHVGVVDDESPGEREGQIGANFGVIVKYQALSDLGGKYQYLVKQYLDGGKDVXXXXXXXXXGYSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDGNDTDTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGGDKAQWIRDAFDAVVNQFTRVEQCNWFLINKAGDWDLNSDSERHAFGDSLNEYSW 275
BLAST of jgi.p|Trimin1|140597 vs. uniprot
Match: A0A835YVC0_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC0_9STRA) HSP 1 Score: 383 bits (983), Expect = 4.810e-132 Identity = 177/258 (68.60%), Postives = 207/258 (80.23%), Query Frame = 1 Query: 55 GANFGVIVKYQALSDLGGKYQYLVKQYLDGGKDVXXXXXXXXXGYSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDGNDTDTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGG-DKAQWIRDAFDAVVNQFTRVEQCNWFLINKAGDWDLNSDSERHAFGDSLNEYSW 825 GA F +VKYQ+++ L G+Y+YLVK YLD GK V Y+NLQ I DG FD LN FIDD + GN+Q+WIR +HEFNGDWY WGTYR+GN FKRAF+HV VF+ RGAN KFQL YNC NP +DG SF +W+PGGDVVDMILCSGYNRAG+DS+H SWQSFS+V+SSGYYKMA+LDGGKPLGVAETSST+W K QWI+DAF+A+VN+FTRVEQCNWFLINK G+W LNSD ERHAFGDS+N+YSW Sbjct: 1 GAKFQTVVKYQSVTGLPGQYKYLVKPYLDAGKSVVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNGNSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKDGNWGLNSDDERHAFGDSINQYSW 258
BLAST of jgi.p|Trimin1|140597 vs. uniprot
Match: A0A835YS57_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS57_9STRA) HSP 1 Score: 362 bits (928), Expect = 2.630e-121 Identity = 175/277 (63.18%), Postives = 207/277 (74.73%), Query Frame = 1 Query: 1 LHVGVVDDES--PGEREGQIGANFGVIVKYQALSDLGGKYQYLVKQYLDGGKDVXXXXXXXXXGYSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDGNDTDTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGG-DKAQWIRDAFDAVVNQFTRVEQCNWFLINKAGDWDLNSDSERHAFGDSLNEYS 822 L +G+ DD S P +RE IGA F + KYQ +SDL GKYQYLV+ +L+ G+ V Y +LQ I DGAFD LN FID+ + GN+ +WIR +HEFNGDWYP GTYR GN +D FKRA+RHVV VFR RGAN KFQLAYNCDN +D KSF W+PG VDM++CSGYNRAG+D+DH WQSFS+V+SSGY KMA+L G KPLG+AE SST+W K QWIRDAFDAVV +FTRV Q NWFLINK GDW LNSD+ER AFGDS+N+YS Sbjct: 54 LLIGIADDSSISPTDREKLIGAKFQTVQKYQKVSDLPGKYQYLVEPHLNAGRTVVLMTEFDDGSYVDLQAIGDGAFDSYLNKFIDEWQADGNRTVWIRPMHEFNGDWYPCGTYRTGNSSDKFKRAYRHVVSVFRNRGANAKFQLAYNCDNARNDSKSFGVWWPGKYAVDMVVCSGYNRAGLDADHQKWQSFSDVYSSGYNKMAALPGLKPLGIAEMSSTTWQSYSKPQWIRDAFDAVVTKFTRVRQLNWFLINKEGDWGLNSDAERQAFGDSVNKYS 330
BLAST of jgi.p|Trimin1|140597 vs. uniprot
Match: A0A835YZR6_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZR6_9STRA) HSP 1 Score: 328 bits (840), Expect = 4.260e-104 Identity = 164/310 (52.90%), Postives = 203/310 (65.48%), Query Frame = 1 Query: 7 VGVVDDES--PGEREGQIGANFGVIVKYQALSDLGGKYQYLVKQYLDGGKDVXXXXXXXXXGYSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDGNDTDTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSW-GGDKAQWIRDAFDAVVNQFTRV----------------------------------EQCNWFLINKAG-DWDLNSDSERHAFGDSLNEYS 822 +G++DD S P RE IGA F V+VKYQ + +L GKY+YL+K +LD + V Y+NLQ I DGAFD LN FID+ + GN+ MWIR +HEFNGDWY WGTYR GND F+RAF+HV VF+ RGA K QL+YNCDN + ++F +W+PG DVVDM+LCSGYNRAG DS H SW+SF++VF+ GY +MA+L G KPLGVAETSST+W K QWI+DAF AVVN+FTR+ Q NWFLINK +W LNSD+ER AFGDS+N+YS Sbjct: 274 IGIIDDASITPTSRESLIGAKFQVVVKYQKVKELPGKYKYLLKPHLDANRTVVLVPEFYDGSYANLQAIGDGAFDSYLNKFIDEWKADGNRAMWIRPMHEFNGDWYSWGTYRSGNDRAKFQRAFKHVAYVFKNRGAQAKMQLSYNCDNARGENRNFTEWFPGTDVVDMVLCSGYNRAGTDSYHMSWKSFTDVFTPGYNRMAALSGNKPLGVAETSSTTWQSNSKPQWIKDAFYAVVNKFTRIXXXXXXXXXXXXXXEQFDCIYINKGDTFNCGLDTSQHNWFLINKGSLNWGLNSDAERKAFGDSINKYS 583
BLAST of jgi.p|Trimin1|140597 vs. uniprot
Match: A0A835YW31_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW31_9STRA) HSP 1 Score: 282 bits (721), Expect = 1.620e-92 Identity = 132/239 (55.23%), Postives = 165/239 (69.04%), Query Frame = 1 Query: 112 YQYLVKQYLDGGKDVXXXXXXXXXGYSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDG-NDTDTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGGDKAQWIRDAFDAVVNQFTRVEQCNWFLINKAGDWDLNSDSERHAFGDSLNEYSW 825 Y VK LD DV Y+NLQ+I DG +D LN FID GN+++ IR +HEFNGDWYPWGT+R G N D FKRAF+HV VF+ RGANVK QLAYNCD+ +DG F DWYPG DVVD+ILCS YNR+G++ W+SF EVF GY +MAS+ G KPLG+ ET ST WGGDK WI DAF+ +V ++TRV++C+W L NK GDWDLN+D + AFGD + ++ + Sbjct: 2 YWNTVKPALDKVDDVVLVVQFDTYDYTNLQEIGDGRYDASLNQFIDAWKDDGNRRLSIRPMHEFNGDWYPWGTFRGGGNSKDNFKRAFQHVAGVFKRRGANVKMQLAYNCDSAQNDGSPFADWYPGDDVVDIILCSAYNRSGLEGH--GWESFDEVFGGGYDRMASIPGNKPLGLGETGSTDWGGDKPAWISDAFNQLVYKYTRVQECHWLLENKEGDWDLNTDGDVWAFGDGMRKFEF 238
BLAST of jgi.p|Trimin1|140597 vs. uniprot
Match: A0A836CGL5_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGL5_9STRA) HSP 1 Score: 276 bits (706), Expect = 3.320e-88 Identity = 140/279 (50.18%), Postives = 187/279 (67.03%), Query Frame = 1 Query: 1 LHVGVVDDESPGEREGQIGANFGVIVKYQALSDLGGKYQYLVKQYLDGG-KDVXXXXXXXXXGYSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDGNDTDT-FKRAFRHVVDVFRGRGANVKFQLAYNCDN-PNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSW-GGDKAQWIRDAFDAVVNQFTRVEQCNWFLINKA-GDWDLNSDSERHAFGDSLNEYS 822 L +G+ D+ P R+ ++GA F +VK+Q++ + +Y +LVK +LD G + V ++NL+QI +G +D L F+D++M GN+++W+R LHEFNGDWYPWGTYR G++T FKRA+RHV + +GAN+KFQLAYNC N ND F DW+PG VDM++CSGYNRAG D+DH W +F EVF + Y +M +L G KPLGV ETS ++ DKAQWIRDAF VN + R+E WFL NK G WDLNS E AFG+SL EY+ Sbjct: 70 LMIGLSDNMLPVARQAELGAKFQAVVKFQSVQKM--RYPFLVKPHLDAGFQSVMVMEFLDATRHTNLKQIANGLYDKYLYKFVDELMDDGNREVWVRPLHEFNGDWYPWGTYRGGDNTKRMFKRAWRHVHWILTNKGANIKFQLAYNCVNGQNDQTTPFLDWWPGEQYVDMVVCSGYNRAGSDADHQQWLTFPEVFGAAYEQMLTLPGMKPLGVGETSCNNFEDNDKAQWIRDAFYDFVNTYPRIEHVTWFLQNKNDGRWDLNSPEEIAAFGESLIEYT 346
BLAST of jgi.p|Trimin1|140597 vs. uniprot
Match: A0A835YXK1_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXK1_9STRA) HSP 1 Score: 266 bits (681), Expect = 2.560e-86 Identity = 127/217 (58.53%), Postives = 159/217 (73.27%), Query Frame = 1 Query: 187 YSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDG-NDTDTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGG-DKAQWIRDAFDAVVNQFTRVEQCNWFLINK--AGDWDLNSDSERHAFGDSLNEYSW 825 Y +LQ + +G +D QLN FID+ + GN+++ IR +HEFNGDWY WGTYR G N FKRA+ HV +FR RGAN QL+YNC NPNDD SF +WYPG + VDM+LCS YNRAG+DSDH W++F +VF GY +MA+L G K LGVAE +TSWGG KAQWIRDAF A+VNQ+TRVE+ W L NK +GDW+LN+ SE AFG S+ +Y + Sbjct: 13 YRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKYEY 229
BLAST of jgi.p|Trimin1|140597 vs. uniprot
Match: A0A836CJI7_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJI7_9STRA) HSP 1 Score: 275 bits (702), Expect = 8.390e-85 Identity = 141/279 (50.54%), Postives = 183/279 (65.59%), Query Frame = 1 Query: 1 LHVGVVDDESPGEREGQIGANFGVIVKYQALSDLGGKYQYLVKQYLDGGKDVXXXXXXXXXGY-SNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDGNDT-DTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKS-FHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGG-DKAQWIRDAFDAVVNQFTRVEQCNWFLINKA-GDWDLNSDSERHAFGDSLNEYS 822 L V ++D+ P R+ ++GA F V+VK+Q + + +Y +LVK YLD G +V +NLQ+I DG +D L FID++ GN+ +WIR +HEFNGDWYPWGTY G +T D F RA++H+ DVF + ANVKFQLAYNCDN DD + F W+PG + VDM++CSGYNRAG D +H W +F +V+++ Y +MA+L G KPLGV E S +G DKAQWIRDAF FTRV Q WFL NK G WDLN+ E AFGD L EY+ Sbjct: 35 LKVAILDEMEPNARQAELGAQFQVVVKFQPVQQM--RYPFLVKPYLDQGYEVVMVTEFLDDVLVTNLQEIGDGLYDDYLYQFIDELKDDGNRAVWIRPMHEFNGDWYPWGTYHGGTNTIDNFIRAWQHIHDVFTVKKANVKFQLAYNCDNAQDDVTTPFTAWWPGDEYVDMVVCSGYNRAGSDENHMEWLTFQDVYANAYNQMAALPGLKPLGVGEMSCNDFGDYDKAQWIRDAFADFDTTFTRVTQVTWFLQNKDDGRWDLNTPDEIQAFGDCLREYT 311
BLAST of jgi.p|Trimin1|140597 vs. uniprot
Match: A0A835YWE9_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWE9_9STRA) HSP 1 Score: 258 bits (658), Expect = 2.130e-81 Identity = 134/278 (48.20%), Postives = 174/278 (62.59%), Query Frame = 1 Query: 1 LHVGVVDDESPGEREGQIGANFGVIVKYQALSDLGGKYQYLVKQYLDGGKDVXXXXXXXXXGYSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDGNDT-DTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKS-FHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGG-DKAQWIRDAFDAVVNQFTRVEQCNWFLINKA-GDWDLNSDSERHAFGDSLNEYS 822 L VG+ D P RE ++ A F V+ K+ + + +Y +LVK YLD G V +NL+QI DG +D L F D+++ GN+++W+R +HEFNGDWYPWGTY G +T F RA+RHV V +GAN+KFQL YNC N +D K+ F W+PG DVVDM++CS YNRAG D HT WQ++ +VF GY +MA+L PLGV E + G DKA WIRDAF A + RVEQ WFL +K G+WDLNS E AF DSL +Y+ Sbjct: 28 LDVGIADILEPVYREEELNAQFQVVTKFGFIKTM--RYPFLVKNYLDQGFKVVLVVQFLDTLTTNLKQIGDGLYDKYLYKFADELIKDGNREVWVRPMHEFNGDWYPWGTYMGGTNTIQNFIRAYRHVYQVLTAKGANIKFQLGYNCVNGANDKKTPFSAWWPGDDVVDMVVCSAYNRAGTDQFHTQWQTWPDVFQLGYDQMAALPTSAPLGVGEMGTVGMAGEDKAGWIRDAFAAFPTLYPRVEQITWFLEDKDDGEWDLNSADEIEAFRDSLLQYT 303
BLAST of jgi.p|Trimin1|140597 vs. uniprot
Match: A0A835Z6S0_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6S0_9STRA) HSP 1 Score: 262 bits (670), Expect = 2.530e-76 Identity = 136/280 (48.57%), Postives = 178/280 (63.57%), Query Frame = 1 Query: 1 LHVGVVDDESPGEREGQIGANFGVIVKYQALSDLGGKYQYLVKQYLDGGKDVXXXXXXXXXGY-SNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDG-NDTDTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKS-FHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGG-DKAQWIRDAFDAVVNQFTRVEQCNWFLINKAGD--WDLNSDSERHAFGDSLNEYS 822 + + ++D+ P R+ ++GA F V+VK+Q + + +Y +LVK YLD G V +NL QI G +D L F+D+ + GNQ++WIR +HEFNGDWYPWGTY G N F RA+RHV DVF + ANVKFQLAYNCDN DD + F DW+PG + VDM++CSGYNRAG D +H W +F +V+ + Y +M +L G KPLGV E S + G DKAQWI DAF VN + RV+Q WFL NK GD WDLNS + AF + L Y+ Sbjct: 1038 VDIAILDEMEPNARQAELGAQFQVVVKFQPVQSM--RYPFLVKPYLDQGFQVVMVTEFLDNELLTNLWQIGSGKYDDYLYQFMDEHKADGNQEVWIRPMHEFNGDWYPWGTYHGGFNTKKNFIRAWRHVHDVFTVKKANVKFQLAYNCDNGQDDVTTPFTDWWPGMNYVDMVVCSGYNRAGTDENHMEWLTFQDVYGAAYEQMLALPGYKPLGVGEMSCNDFEGYDKAQWITDAFYDFVNTYPRVKQVTWFLQNKEGDGRWDLNSPEQIAAFANGLKLYT 1315 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|140597 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6312 ID=mRNA_6312|Name=jgi.p|Trimin1|140597|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=825bp|location=Sequence derived from alignment at Contig_47:941833..944701- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTTCACGTCGGCGTCGTGGACGACGAGTCTCCTGGCGAGAGAGAGGGCCAback to top protein sequence of jgi.p|Trimin1|140597 >Trimin1|140597|gw1.47.107.1 ID=Trimin1|140597|gw1.47.107.1|Name=jgi.p|Trimin1|140597|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=275bp LHVGVVDDESPGEREGQIGANFGVIVKYQALSDLGGKYQYLVKQYLDGGKback to top mRNA from alignment at Contig_47:941833..944701- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6312 ID=mRNA_6312|Name=jgi.p|Trimin1|140597|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2869bp|location=Sequence derived from alignment at Contig_47:941833..944701- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_47:941833..944701- >mRNA_6312 ID=mRNA_6312|Name=jgi.p|Trimin1|140597|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=825bp|location=Sequence derived from alignment at Contig_47:941833..944701- (Tribonema minus UTEX_B_3156 )back to top |