mRNA_6265 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|70546
Unique NamemRNA_6265
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|70546 vs. uniprot
Match: A0A836CDN8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDN8_9STRA)

HSP 1 Score: 258 bits (659), Expect = 1.850e-86
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1 
Query:   61 MGLLKVVLPVVGLLHLYAAFLAFTEPAKVLDLLSISHEVSLSASTVYLVHVLSGAFASLGVLSVLSYIMGSVSRFKVGVANLIFHALPAVDAHFFTKGATTALQTPLVACAGVLTVSLVLHLLEPGLFTQDKRKRKST 474
            MGLLKVVLPVVGLLHLYAAFLAFTEPAKVLDLLSISHEVSLSASTVYLVHVLSGAFASLGVLSVLSYIMGSVSRFKVGVANLIFHALPAVDAHFFTKGATTALQTPLVACAGVLTVSLVLHLLEPGLFTQDKRKRKST
Sbjct:    1 MGLLKVVLPVVGLLHLYAAFLAFTEPAKVLDLLSISHEVSLSASTVYLVHVLSGAFASLGVLSVLSYIMGSVSRFKVGVANLIFHALPAVDAHFFTKGATTALQTPLVACAGVLTVSLVLHLLEPGLFTQDKRKRKST 138
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|70546 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CDN8_9STRA1.850e-86100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_47contigContig_47:672695..674973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|70546|CE70545_57
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_002940.1
TranscriptId70868
TrackFilteredModels1
ProteinId70546
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|70546gene_6265Tribonema minus UTEX_B_3156 geneContig_47 672695..674973 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|70546Trimin1|70546|CE70545_57Tribonema minus UTEX_B_3156 polypeptideContig_47 672701..674778 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6265_3exon_6265_3Tribonema minus UTEX_B_3156 exonContig_47 672695..672889 -
exon_6265_2exon_6265_2Tribonema minus UTEX_B_3156 exonContig_47 674551..674778 -
exon_6265_1exon_6265_1Tribonema minus UTEX_B_3156 exonContig_47 674914..674973 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6265UTR3_6265Tribonema minus UTEX_B_3156 three_prime_UTRContig_47 672695..672700 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6265CDS_6265Tribonema minus UTEX_B_3156 CDSContig_47 674551..674778 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6265UTR5_6265Tribonema minus UTEX_B_3156 five_prime_UTRContig_47 674914..674973 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6265 ID=mRNA_6265|Name=jgi.p|Trimin1|70546|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=483bp|location=Sequence derived from alignment at Contig_47:672695..674973- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATTGGCTTCTGGAGACGGTGGAACGTCTAAAGCCCAGCAAGCAGGCGTTC
TTGGCAAGCGATGGGACTGCTTAAAGTAGTGCTGCCTGTGGTGGGCCTGC
TTCACCTGTATGCTGCGTTCCTGGCGTTCACGGAGCCGGCGAAGGTGCTG
GATCTGCTGTCGATAAGCCATGAGGTCTCGCTCAGCGCTAGCACAGTTTA
CCTGGTGCACGTGCTGTCGGGTGCCTTCGCGAGTCTGGGGGTGCTGAGCG
TGCTTTCGTACATTATGGGCAGCGTCTCAAGGTTCAAGGTCGGCGTGGCC
AACCTCATCTTCCACGCGCTACCGGCGGTGGACGCGCACTTCTTCACCAA
GGGCGCCACGACGGCGCTGCAGACGCCGCTCGTCGCATGCGCCGGCGTGC
TGACCGTCTCCCTCGTCCTGCACCTCTTGGAGCCCGGACTCTTCACGCAG
GACAAGCGCAAGCGAAAGTCCACGTAGGTTGGT
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protein sequence of jgi.p|Trimin1|70546

>Trimin1|70546|CE70545_57 ID=Trimin1|70546|CE70545_57|Name=jgi.p|Trimin1|70546|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=139bp
MGLLKVVLPVVGLLHLYAAFLAFTEPAKVLDLLSISHEVSLSASTVYLVH
VLSGAFASLGVLSVLSYIMGSVSRFKVGVANLIFHALPAVDAHFFTKGAT
TALQTPLVACAGVLTVSLVLHLLEPGLFTQDKRKRKST*
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mRNA from alignment at Contig_47:672695..674973-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6265 ID=mRNA_6265|Name=jgi.p|Trimin1|70546|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2279bp|location=Sequence derived from alignment at Contig_47:672695..674973- (Tribonema minus UTEX_B_3156 )
ATTGGCTTCTGGAGACGGTGGAACGTCTAAAGCCCAGCAAGCAGGCGTTC
TTGGCAAGCGGTAAGCATGCTGCAATGGCGCCCACACTCTGCTCCCCGTG
TGCCGAGTTCATGATGATGTAGCGCTTCTTCAACATGCGCCTAAAAGATC
TCAATCGTTCGTTGCTGCCTTGTTTGACGTGCTGAGCCATCGCAGATGGG
ACTGCTTAAAGTAGTGCTGCCTGTGGTGGGCCTGCTTCACCTGTATGCTG
CGTTCCTGGCGTTCACGGAGCCGGCGAAGGTGCTGGATCTGCTGTCGATA
AGCCATGAGGTCTCGCTCAGCGCTAGCACAGTTTACCTGGTGCACGTGCT
GTCGGGTGCCTTCGCGAGTCTGGGGGTGCTGAGCGTGCTTTCGTACATTA
TGGGCAGCGTCTCAAGGTTCAAGGTGAGCACTCAACAGAAGTAGGGGCCA
GGTGAAATCTTGCATCCTGTGCGACAGAGACTGAAAACTAACAAATCACC
TTTATGCCGTGGGCATGATTGAGCTTTGCTGCGTGAGTCAAGCCAGGGCT
CAGCTGCCTTGTGATCCAGCAAGCTTGCTTCAAGGTGCAATCAACTGCTT
AGGCAAAGTGCTAAGCACGTGCTCAGGCTGCGGAGCGCATCCATTCGGTG
ACAGTCATATGTTGGCTGACAGTCAGCAATACTCAGGTGCTTTGGTGGGT
CTATGAAAGCAACCGGTGGCTTGTACAAGGATGTCCATGGTTGTGTGCAG
CACTATCTCATTGGTTGAACTGTGAGCAGGGTTTGTTCGCCGCCGCTTTG
CAAAGCGCAAAACTCTTTGCTGCTGACACTCTCAGCTCAACGCCTGCCCC
CGATGGGGTGATGATTCAGTCTCTCCACCGGCAATCAGCGCAGCTGCAGC
TGCCAGCGCGTAACGGCTGAGTCATGCCGCCAAGCAGTACGCAATGTACT
GTGCCTAGGACGGGGCGCAGGATGGTTGTGACTTCCTAGTGAGCTAGCTT
ATGGCCGGCGCACCGCTGCAAGCACACGTGGTGTGGTGCAATGAGTTGTG
CGTGTGCATGCGCTCCCGGCGGCTACAGATGCACGATTCATCTTGGGGCG
GTCACGGCCGAGCTGACAAGAACAGGATTCGCATCTGCACGTGTGCGTGC
CGCAAGCAGCCCTGTTGCCAGCTTGCAGCTGCACGTTCCACTTTCGGGTT
CGTGCTCAACGAATATGCTGCCTTCTAACCGCGCCCGAAACGCACAGTGG
GCGCAGTGCTTGATGGTAACCTTGAATCTCACATGATTTTCATCTGGGCA
TGGCCAAACTTGATGTTCCATGCGGCACTTGCCGTTGCACTCATCCCTCT
GGCAACGCCGTTGCGCATGCCGATGCAACATAGAAGGTTTGATTGGCAAT
GCATCAGACCCGCTGCTTTCACGCCCTACTCTGCGAACTCCAGATCCTCC
GTGCTGCGTGTCGGCGACGCAGCCAGCTGGGCCATTCACGCGGTGCCTGC
ATTCGACGGGTATTGCATTGGGGGAGGACACCAGTTTGTGTAGGTGATTT
CCTGACCGCGTGCCTGACCGCAAGCGTGGATCATCCACGTCATTGCTGTA
TAGCTCCATCTCCGGAAATGTTTTCTTGTTACCTTCTCCCACCCTGCCCT
CTCTGCCAAACATCGTCAATGATGGTGTCAGAGGGCCCGTACCCTCCCTC
CACCCCTACCCCCACCCACCCTCCGGGTGTCAGAGGCCTTTGCATCGAGC
AATCCGAGCAAGGGGTGAGGGTGGGGTGGAGGAGTGCGGTGGGAGGGGAG
TGAGCGGCGGACCGACGTGGGAGGCTCTGGGCATAATCAGCCCAGGGGTC
AGTCCTGAGGTCGCTTCACCCCCGCCCCCCCCCGCACAATGGCACAACAT
CATGACCACACATGTTCTTCTGGTCTGTGTGTTTTGTTTGCTGGTGCTCG
CTCAAGTGCAGTGGCAAGGGCATGTTGAGCCGCAGTGCTCAACAAAGCAA
GCAGTGTTTTTTTCATCCTTCCGCCCCTGCCCCTGCGCGCCGCGCCGCTT
CACCTCCTACTTCAACTTCAACTTGCACTTGCAGGTCGGCGTGGCCAACC
TCATCTTCCACGCGCTACCGGCGGTGGACGCGCACTTCTTCACCAAGGGC
GCCACGACGGCGCTGCAGACGCCGCTCGTCGCATGCGCCGGCGTGCTGAC
CGTCTCCCTCGTCCTGCACCTCTTGGAGCCCGGACTCTTCACGCAGGACA
AGCGCAAGCGAAAGTCCACGTAGGTTGGT
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Coding sequence (CDS) from alignment at Contig_47:672695..674973-

>mRNA_6265 ID=mRNA_6265|Name=jgi.p|Trimin1|70546|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=417bp|location=Sequence derived from alignment at Contig_47:672695..674973- (Tribonema minus UTEX_B_3156 )
ATGGGACTGCTTAAAGTAGTGCTGCCTGTGGTGGGCCTGCTTCACCTGTA
TGCTGCGTTCCTGGCGTTCACGGAGCCGGCGAAGGTGCTGGATCTGCTGT
CGATAAGCCATGAGGTCTCGCTCAGCGCTAGCACAGTTTACCTGGTGCAC
GTGCTGTCGGGTGCCTTCGCGAGTCTGGGGGTGCTGAGCGTGCTTTCGTA
CATTATGGGCAGCGTCTCAAGGTTCAAGGTCGGCGTGGCCAACCTCATCT
TCCACGCGCTACCGGCGGTGGACGCGCACTTCTTCACCAAGGGCGCCACG
ACGGCGCTGCAGACGCCGCTCGTCGCATGCGCCGGCGTGCTGACCGTCTC
CCTCGTCCTGCACCTCTTGGAGCCCGGACTCTTCACGCAGGACAAGCGCA
AGCGAAAGTCCACGTAG
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