mRNA_625 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157153
Unique NamemRNA_625
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|157153 vs. uniprot
Match: A0A835Z5Y3_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Y3_9STRA)

HSP 1 Score: 278 bits (710), Expect = 1.640e-94
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 
Query:    1 MYDHPQALVLVAAGNEGAGGFSTVSSPANTKNGLSVGCSGSTHARYGPGRVRVSAFSSRGPTVGDARIKPDVVVPGEQVLSALGRGRGPQHDAAPGQESCAAVYMRGTSMASPVLAGHVLLVRQYFEDGAYAAALREAGLCG 426
            MYDHPQALVLVAAGNEGAGGFSTVSSPANTKNGLSVGCSGSTHARYGPGRVRVSAFSSRGPTVGDARIKPDVVVPGEQVLSALGRGRGPQHDAAPGQESCAAVYMRGTSMASPVLAGHVLLVRQYFEDGAYAAALREAGLCG
Sbjct:    1 MYDHPQALVLVAAGNEGAGGFSTVSSPANTKNGLSVGCSGSTHARYGPGRVRVSAFSSRGPTVGDARIKPDVVVPGEQVLSALGRGRGPQHDAAPGQESCAAVYMRGTSMASPVLAGHVLLVRQYFEDGAYAAALREAGLCG 142
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BLAST of jgi.p|Trimin1|157153 vs. uniprot
Match: A0A836CH33_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH33_9STRA)

HSP 1 Score: 138 bits (348), Expect = 3.420e-35
Identity = 77/133 (57.89%), Postives = 96/133 (72.18%), Query Frame = 1 
Query:    1 MYDHPQALVLVAAGNEGAGGFSTVSSPANTKNGLSVGCSGSTHARYGPGRVRVSAFSSRGPTVGDARIKPDVVVPGEQVLSALGRGRGPQHDAAPGQESCAAVYMRGTSMASPVLAGHVLLVRQYFEDGAYAA 399
            +Y+ P+AL L AAGN+G  G  TV+SPA +KN L+VG SG+     GPG  RVS FSSRGPT  DAR+KPD+V PGE+VLSA  RG G    A P + +CA +Y+ GTSMA+P+LAG  LL+R+Y E GAYAA
Sbjct:  754 LYERPEALALWAAGNDGLYGPGTVTSPALSKNALAVGSSGNGAFHLGPGAARVSDFSSRGPTY-DARVKPDLVAPGEKVLSAAARGAGLLGAAPPREPTCALMYLSGTSMATPLLAGSALLLREYLEGGAYAA 885
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BLAST of jgi.p|Trimin1|157153 vs. uniprot
Match: W7TM23_9STRA (Subtilisin n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM23_9STRA)

HSP 1 Score: 112 bits (281), Expect = 3.570e-26
Identity = 66/141 (46.81%), Postives = 85/141 (60.28%), Query Frame = 1 
Query:    4 YDHPQALVLVAAGNEGAGGFSTVSSPANTKNGLSVGCSGSTHARYGPGRVRVSAFSSRGPTVGDARIKPDVVVPGEQVLSALGRGRGPQHDAAPGQESCAAVYMRGTSMASPVLAGHVLLVRQYFEDGAYAAALREAGLCG 426
            Y+H   L++ AAGN G  GF ++ SP NTKN L+VG + S   R    R  ++ FSSRGPT  D R+KPD+V PG  + SA   G            +C+ V M GTSMA+PV+AG   L+RQYF++G Y AALR  G CG
Sbjct:  695 YEHQDFLIIYAAGNYGEDGFHSIGSPGNTKNVLTVGATESGPERQSQDRDYIAKFSSRGPTK-DGRLKPDIVSPGSYIYSARSAGYN-------NGGTCSYVAMAGTSMAAPVVAGAAALIRQYFKEGHYYAALRARGECG 827
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BLAST of jgi.p|Trimin1|157153 vs. uniprot
Match: A0A4D9D243_9STRA (Subtilisin n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D243_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.220e-25
Identity = 65/141 (46.10%), Postives = 85/141 (60.28%), Query Frame = 1 
Query:    4 YDHPQALVLVAAGNEGAGGFSTVSSPANTKNGLSVGCSGSTHARYGPGRVRVSAFSSRGPTVGDARIKPDVVVPGEQVLSALGRGRGPQHDAAPGQESCAAVYMRGTSMASPVLAGHVLLVRQYFEDGAYAAALREAGLCG 426
            Y+H   L++ AAGN G  GF ++ SP NTKN L+VG + S   R    R  ++ FSSRGPT  D R+KPD+V PG  + SA   G            +C+ V M GTSMA+P++AG   L+RQYF++G Y AALR  G CG
Sbjct:  368 YEHQDFLIIYAAGNYGEDGFHSIGSPGNTKNVLTVGATESGPERQSQDRNYIAKFSSRGPTK-DGRLKPDIVSPGSYIYSARSAGYN-------NGGTCSYVGMAGTSMAAPLVAGAAALIRQYFKEGHYYAALRARGECG 500
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BLAST of jgi.p|Trimin1|157153 vs. uniprot
Match: L1K260_GUITC (Peptidase_S8 domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K260_GUITC)

HSP 1 Score: 96.7 bits (239), Expect = 7.040e-21
Identity = 62/136 (45.59%), Postives = 80/136 (58.82%), Query Frame = 1 
Query:    1 MYDHPQALVLVAAGNEGAGGFSTVSSPANTKNGLSVGCSGSTHARYGPGRVRVSAFSSRGPTVGDARIKPDVVVPGEQVLSALGRGRGPQHDAAPGQESCAAVYMRGTSMASPVLAGHVLLVRQYFEDGAYAAALR 408
            M+DH   L+LVAAGN G G   T+ SPA  KN L+VG  G+T A Y      ++ FSSRGPT  D R KPD+V PG+ +LSA   G             C+ + M GTSMA+P+ AG   LVRQYF +G  ++ +R
Sbjct:  159 MFDHDDFLILVAAGNTGPGA-GTIGSPATGKNILAVGAGGNTLAAYV--ETYLANFSSRGPTP-DRRFKPDIVCPGDSILSARSDGNLSSFQ-------CSIMVMSGTSMATPICAGAAALVRQYFREGFLSSGVR 283
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BLAST of jgi.p|Trimin1|157153 vs. uniprot
Match: A0A2P1PVF1_9GAMM (Peptidase_S8 domain-containing protein n=1 Tax=Ahniella affigens TaxID=2021234 RepID=A0A2P1PVF1_9GAMM)

HSP 1 Score: 96.3 bits (238), Expect = 2.150e-20
Identity = 59/124 (47.58%), Postives = 81/124 (65.32%), Query Frame = 1 
Query:   22 LVLVAAGNEGAGGFSTVSSPANTKNGLSVGCSGSTHARYGPGRVRVSAFSSRGPTVGDARIKPDVVVPGEQVLSALGRGRGPQHDAAPGQESCAAVYMRGTSMASPVLAGHVLLVRQYFEDGAY 393
            L +VAAGN+GAG  +T+ SP N+KN L+VG  G  ++        ++ FSSRGPTV D+RIKPD+V PG  ++SALG         A  +++ A   + GTSMA+P +AG + L+RQYFEDG Y
Sbjct:  433 LFVVAAGNDGAGA-TTIGSPGNSKNALTVGALGHGNS------TAIAGFSSRGPTV-DSRIKPDIVAPGSSIVSALGNTNN-----AGTEQTGATQSLSGTSMATPTVAGSLALMRQYFEDGYY 543
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BLAST of jgi.p|Trimin1|157153 vs. uniprot
Match: A0A538PJT0_9DELT (MAM domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A538PJT0_9DELT)

HSP 1 Score: 93.6 bits (231), Expect = 1.670e-19
Identity = 58/131 (44.27%), Postives = 77/131 (58.78%), Query Frame = 1 
Query:    1 MYDHPQALVLVAAGNEGAGGFSTVSSPANTKNGLSVGCSGSTHARYGPGRVRVSAFSSRGPTVGDARIKPDVVVPGEQVLSALGRGRGPQHDAAPGQESCAAVYMRGTSMASPVLAGHVLLVRQYFEDGAY 393
            M++HP  L+L AAGN G G   TV SP+  KNG+SVG +     + G     +++FSS GPT  D RIKPD+ +PG+ ++SA       ++D      +CA   M GTSMAS   AG   LVRQY+ DG Y
Sbjct:   74 MFNHPDFLILFAAGNSGPG-TGTVGSPSTAKNGISVGAT-----QRGTAANSMASFSSCGPTT-DGRIKPDLTMPGQSIVSA-------RNDTNVASNNCATTTMSGTSMASAAAAGMAALVRQYYTDGFY 190
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BLAST of jgi.p|Trimin1|157153 vs. uniprot
Match: A0A1Z5KB42_FISSO (Subtilisin n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KB42_FISSO)

HSP 1 Score: 93.6 bits (231), Expect = 1.870e-19
Identity = 61/132 (46.21%), Postives = 79/132 (59.85%), Query Frame = 1 
Query:    1 MYDHPQALVLVAAGNEGAGGFS-TVSSPANTKNGLSVGCSGSTHARYGPGRVRVSAFSSRGPTVGDARIKPDVVVPGEQVLSALGRGRGPQHDAAPGQESCAAVYMRGTSMASPVLAGHVLLVRQYFEDGAY 393
            +YDHP  L +VAAGN G+G    TV+SPA TKNG++VG + S+          ++ FSSRGPT  D R+KPDVV PG  + SA    R          ES   V M GTSMA+P++AG   ++RQYF +G Y
Sbjct:  433 LYDHPDFLFVVAAGNSGSGNVRHTVASPATTKNGIAVGATDSSIGGI------LAEFSSRGPTA-DGRMKPDVVAPGLMITSA----RSDPSLRGECDESSGLVQMSGTSMATPLVAGVAAIIRQYFAEGWY 553
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BLAST of jgi.p|Trimin1|157153 vs. uniprot
Match: A0A1Z5JI36_FISSO (Subtilisin n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JI36_FISSO)

HSP 1 Score: 92.0 bits (227), Expect = 6.450e-19
Identity = 60/132 (45.45%), Postives = 80/132 (60.61%), Query Frame = 1 
Query:    1 MYDHPQALVLVAAGNEGAGGF-STVSSPANTKNGLSVGCSGSTHARYGPGRVRVSAFSSRGPTVGDARIKPDVVVPGEQVLSALGRGRGPQHDAAPGQESCAAVYMRGTSMASPVLAGHVLLVRQYFEDGAY 393
            +YDHP  L +VAAGN G+G   +TV+SPA TKNG++VG + ++          ++ FSSRGPT  D R+KPDVV PG  + SA    R          ES   V M GTSMA+P++AG   ++RQYF +G Y
Sbjct:  435 LYDHPDFLFVVAAGNSGSGNIRNTVASPATTKNGIAVGATDNSIGGI------LAEFSSRGPT-SDGRMKPDVVAPGLMITSA----RADPSLRGECDESNGLVQMSGTSMATPLVAGVAAVIRQYFAEGWY 555
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BLAST of jgi.p|Trimin1|157153 vs. uniprot
Match: A0A7S3YRY0_9EUKA (Subtilisin n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YRY0_9EUKA)

HSP 1 Score: 91.3 bits (225), Expect = 1.180e-18
Identity = 58/131 (44.27%), Postives = 77/131 (58.78%), Query Frame = 1 
Query:    1 MYDHPQALVLVAAGNEGAGGFSTVSSPANTKNGLSVG--CSGSTHARYGPGRVRVSAFSSRGPTVGDARIKPDVVVPGEQVLSALGRGRGPQHDAAPGQESCAAVYMRGTSMASPVLAGHVLLVRQYFEDG 387
            +Y++P  LVL+AAGN G  G  +V SPA  KNGL+VG  CS  T+    P       FSS GPT  D R+KPD++ PG  + SA     GP   +    ++CA+ +  GTSMA+PV AG   L+RQY  +G
Sbjct:  464 VYENPNHLVLIAAGNSGRNGLGSVGSPATFKNGLAVGASCSPDTNENGSP------QFSSLGPTA-DGRLKPDIMAPGVSINSA---SAGPSGSS----QTCASTFKSGTSMATPVAAGAAALLRQYLMEG 580
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157153 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5Y3_9STRA1.640e-94100.00Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A836CH33_9STRA3.420e-3557.89Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
W7TM23_9STRA3.570e-2646.81Subtilisin n=1 Tax=Nannochloropsis gaditana TaxID=... [more]
A0A4D9D243_9STRA1.220e-2546.10Subtilisin n=1 Tax=Nannochloropsis salina CCMP1776... [more]
L1K260_GUITC7.040e-2145.59Peptidase_S8 domain-containing protein (Fragment) ... [more]
A0A2P1PVF1_9GAMM2.150e-2047.58Peptidase_S8 domain-containing protein n=1 Tax=Ahn... [more]
A0A538PJT0_9DELT1.670e-1944.27MAM domain-containing protein n=1 Tax=Deltaproteob... [more]
A0A1Z5KB42_FISSO1.870e-1946.21Subtilisin n=1 Tax=Fistulifera solaris TaxID=15195... [more]
A0A1Z5JI36_FISSO6.450e-1945.45Subtilisin n=1 Tax=Fistulifera solaris TaxID=15195... [more]
A0A7S3YRY0_9EUKA1.180e-1844.27Subtilisin n=1 Tax=Lotharella globosa TaxID=91324 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:866151..866868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157153|e_gw1.2.153.1
Descriptionserine-type endopeptidase activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1404@1|root,KOG4266@2759|Eukaryota
Evalue1.15e-21
Seed ortholog55529.EKX54911
Hectar predicted targeting categoryother localisation
TranscriptId157475
TrackFilteredModels1
ProteinId157153
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157153gene_625Tribonema minus UTEX_B_3156 geneContig_2 866151..866868 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157153Trimin1|157153|e_gw1.2.153.1Tribonema minus UTEX_B_3156 polypeptideContig_2 866151..866868 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_625_2exon_625_2Tribonema minus UTEX_B_3156 exonContig_2 866151..866342 -
exon_625_1exon_625_1Tribonema minus UTEX_B_3156 exonContig_2 866635..866868 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_625CDS_625Tribonema minus UTEX_B_3156 CDSContig_2 866635..866868 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_625 ID=mRNA_625|Name=jgi.p|Trimin1|157153|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=426bp|location=Sequence derived from alignment at Contig_2:866151..866868- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGACCACCCGCAGGCGCTCGTGCTCGTCGCCGCCGGCAACGAGGG
CGCGGGGGGCTTCTCCACGGTCTCGTCACCCGCCAACACCAAGAACGGCC
TCAGCGTCGGCTGCTCCGGCAGCACGCACGCGCGTTACGGGCCCGGGCGC
GTGCGAGTCTCGGCGTTCTCGAGCCGCGGCCCGACGGTCGGCGACGCGCG
CATCAAGCCGGACGTGGTCGTGCCCGGCGAGCAGGTGCTCAGCGCGCTGG
GGCGCGGGCGCGGTCCGCAGCACGACGCGGCGCCCGGCCAGGAGAGCTGC
GCTGCCGTCTACATGCGCGGCACGAGTATGGCGTCGCCTGTGCTCGCGGG
GCACGTGCTGCTCGTGCGCCAGTACTTTGAGGACGGCGCGTACGCGGCCG
CGCTGCGGGAGGCGGGCCTGTGCGGC
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protein sequence of jgi.p|Trimin1|157153

>Trimin1|157153|e_gw1.2.153.1 ID=Trimin1|157153|e_gw1.2.153.1|Name=jgi.p|Trimin1|157153|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=142bp
MYDHPQALVLVAAGNEGAGGFSTVSSPANTKNGLSVGCSGSTHARYGPGR
VRVSAFSSRGPTVGDARIKPDVVVPGEQVLSALGRGRGPQHDAAPGQESC
AAVYMRGTSMASPVLAGHVLLVRQYFEDGAYAAALREAGLCG
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mRNA from alignment at Contig_2:866151..866868-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_625 ID=mRNA_625|Name=jgi.p|Trimin1|157153|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=718bp|location=Sequence derived from alignment at Contig_2:866151..866868- (Tribonema minus UTEX_B_3156 )
ATGTACGACCACCCGCAGGCGCTCGTGCTCGTCGCCGCCGGCAACGAGGG
CGCGGGGGGCTTCTCCACGGTCTCGTCACCCGCCAACACCAAGAACGGCC
TCAGCGTCGGCTGCTCCGGCAGCACGCACGCGCGTTACGGGCCCGGGCGC
GTGCGAGTCTCGGCGTTCTCGAGCCGCGGCCCGACGGTCGGCGACGCGCG
CATCAAGCCGGACGTGGTCGTGCCCGGCGAGCAGGTGCGTGAGACACGGC
GCGCCGCAGCGGCGGCAGCGGCAGTGCCGCACGCTGCAGGGCGGCGGCGG
CGTCGATGCTTGCTGGCCGCCCGCATGCGGCGCGCGAGGGGCGCACATCT
CGGGGCGCTCTCGACGCAGTCGGCTCTGTCAAGCGCTGCGCGTCAGTACA
GCGCTCTCAATTGCGCGCGCCAGCCGCCGCGACGTCGCGCCTGCGCCGCG
CGCTCTCTCGCATGCGACGCCACGCGCATGCCTCACGCGACGTCCGCCGC
CGCTGCCGCCGCCGCCCCCTGCGCAGGTGCTCAGCGCGCTGGGGCGCGGG
CGCGGTCCGCAGCACGACGCGGCGCCCGGCCAGGAGAGCTGCGCTGCCGT
CTACATGCGCGGCACGAGTATGGCGTCGCCTGTGCTCGCGGGGCACGTGC
TGCTCGTGCGCCAGTACTTTGAGGACGGCGCGTACGCGGCCGCGCTGCGG
GAGGCGGGCCTGTGCGGC
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Coding sequence (CDS) from alignment at Contig_2:866151..866868-

>mRNA_625 ID=mRNA_625|Name=jgi.p|Trimin1|157153|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=426bp|location=Sequence derived from alignment at Contig_2:866151..866868- (Tribonema minus UTEX_B_3156 )
ATGTACGACCACCCGCAGGCGCTCGTGCTCGTCGCCGCCGGCAACGAGGG
CGCGGGGGGCTTCTCCACGGTCTCGTCACCCGCCAACACCAAGAACGGCC
TCAGCGTCGGCTGCTCCGGCAGCACGCACGCGCGTTACGGGCCCGGGCGC
GTGCGAGTCTCGGCGTTCTCGAGCCGCGGCCCGACGGTCGGCGACGCGCG
CATCAAGCCGGACGTGGTCGTGCCCGGCGAGCAGGTGCTCAGCGCGCTGG
GGCGCGGGCGCGGTCCGCAGCACGACGCGGCGCCCGGCCAGGAGAGCTGC
GCTGCCGTCTACATGCGCGGCACGAGTATGGCGTCGCCTGTGCTCGCGGG
GCACGTGCTGCTCGTGCGCCAGTACTTTGAGGACGGCGCGTACGCGGCCG
CGCTGCGGGAGGCGGGCCTGTGCGGC
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