mRNA_6184 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167002
Unique NamemRNA_6184
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|167002 vs. uniprot
Match: A0A836CCJ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCJ3_9STRA)

HSP 1 Score: 621 bits (1602), Expect = 2.290e-221
Identity = 416/416 (100.00%), Postives = 416/416 (100.00%), Query Frame = 1
Query:    1 AARGGHVNVLQWLHELAPWNTQTTHDVLKNAAXXXXXXXXXXXMATHDWRGGGAXXXXXXXXAGKLGALQHLLRCGSEVDHNAFSEAAACGQVELMEWALVEGAPLPLRLRDACRRATRRGQRASLEWLESTFFAAPWDEDIFSCAAYSGDMTLLQWLHERGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGKTEVAMAARGDVSRLDWLRARGHVFHSPPDMWAVADFSTMRWLHKHEFPCNAQAMHAALGNAEAMLWLLYEVGSSAWDGSACVAAASEGDPTSLALLHMTCRATGGGHDQEVCAAAAAGGYGDVLRWARGEGCAXXXXXXXXXXXXXXXXXXXXXXXXAIRVVRQSCGACRSERRGQGWRTQQLLALCADAAARC 1248
            AARGGHVNVLQWLHELAPWNTQTTHDVLKNAAXXXXXXXXXXXMATHDWRGGGAXXXXXXXXAGKLGALQHLLRCGSEVDHNAFSEAAACGQVELMEWALVEGAPLPLRLRDACRRATRRGQRASLEWLESTFFAAPWDEDIFSCAAYSGDMTLLQWLHERGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGKTEVAMAARGDVSRLDWLRARGHVFHSPPDMWAVADFSTMRWLHKHEFPCNAQAMHAALGNAEAMLWLLYEVGSSAWDGSACVAAASEGDPTSLALLHMTCRATGGGHDQEVCAAAAAGGYGDVLRWARGEGCAXXXXXXXXXXXXXXXXXXXXXXXXAIRVVRQSCGACRSERRGQGWRTQQLLALCADAAARC
Sbjct:    1 AARGGHVNVLQWLHELAPWNTQTTHDVLKNAAXXXXXXXXXXXMATHDWRGGGAXXXXXXXXAGKLGALQHLLRCGSEVDHNAFSEAAACGQVELMEWALVEGAPLPLRLRDACRRATRRGQRASLEWLESTFFAAPWDEDIFSCAAYSGDMTLLQWLHERGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGKTEVAMAARGDVSRLDWLRARGHVFHSPPDMWAVADFSTMRWLHKHEFPCNAQAMHAALGNAEAMLWLLYEVGSSAWDGSACVAAASEGDPTSLALLHMTCRATGGGHDQEVCAAAAAGGYGDVLRWARGEGCAXXXXXXXXXXXXXXXXXXXXXXXXAIRVVRQSCGACRSERRGQGWRTQQLLALCADAAARC 416          
BLAST of jgi.p|Trimin1|167002 vs. uniprot
Match: A0A835YTI3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTI3_9STRA)

HSP 1 Score: 311 bits (796), Expect = 5.300e-99
Identity = 208/360 (57.78%), Postives = 236/360 (65.56%), Query Frame = 1
Query:    1 AARGGHVNVLQWLHELAPWNTQTTHDVLKNAAXXXXXXXXXXXMATHDWRGGGAXXXXXXXXAGKLGALQHLLRCGSEVDHNAFSEAAACGQVELMEWALVEGAPLPLRLRDACRRATRRGQRASLEWLESTFF-AAPWDEDIFSCAAYSGDMTLLQWLHERGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGKTEVAMAARGDVSRLDWLRARGHVFHSPPDMWAVADFSTMRWLHKHEFPCNAQAMHAAL--GNAEAMLWLLYEVGSSAWDGSACVAAASEGDPTSLALLHMTCRAT--GGGHDQEVCAAAAAGGYGDVLRWARGEGCA 1065
            AAR G V +LQWLHE+ PW+ +TTH +L NAA           +A HDWRGG  XXXXXXXXAG+L ALQ L   GS  +   FSEAAA GQ+ +MEW +  GAPL +    A R A RRGQRASLEWLE+ F    PWDE IF+ AA SGD+ LL WLH    XXXXXXXXXXXXXXXXXXXXXX                                  A KT+  MA RGDV RL+WLRARGH F SPPDMWAVADF TMRWLHKH FPC+A+AM AAL  G+A+A+ WL  EVG    D  AC+AAA+ GD T+LA LH  CRA   GGGHD +VCAAAAAGG+ DVL+WARG GCA
Sbjct:   30 AARSGQVQILQWLHEVMPWSAETTHSLLHNAAFCGQIGALDWLIAAHDWRGGXXXXXXXXXXAGELPALQFLRAHGSSWNDTTFSEAAANGQIGVMEWLVNAGAPLMVC--SAYRGAARRGQRASLEWLEAAFEDETPWDESIFAYAAESGDLALLHWLHXXXXXXXXXXXXXXXXXXXXXXXXXXLAAAAPLALDVCDVAYSSYEDEAFEWAYGHGLPVAAKTKAEMAERGDVPRLEWLRARGHAFKSPPDMWAVADFGTMRWLHKHGFPCDARAMAAALERGDADAVRWLADEVGHGVCDYHACIAAAAAGDLTTLAPLHAACRAAPGGGGHDADVCAAAAAGGHMDVLQWARGAGCA 387          
BLAST of jgi.p|Trimin1|167002 vs. uniprot
Match: A0A835YS69_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS69_9STRA)

HSP 1 Score: 294 bits (753), Expect = 2.440e-91
Identity = 222/356 (62.36%), Postives = 257/356 (72.19%), Query Frame = 1
Query:    1 AARGGHVNVLQWLHELAPWNTQTTHDVLKNAAXXXXXXXXXXXMATHDWRGGGAXXXXXXXXAGKLGALQHLLRCGSEVDHNAFSEAAACGQVELMEWALVEGAPLPLRLRDACRRATRRGQRASLEWLESTFFA-APWDEDIFSCAAYSGDMTLLQWLHERGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGKTEVAMAARGDVSRLDWLRARGHVFHSPPDMWAVADFSTMRWLHKHEFPCNAQAMHAALGNAEAMLWLLYEVGSSAWDGSACVAAASEGDPTSLALLHMTCRATGGGHDQEVCAAAAAGGYGDVLRWARGEGCA 1065
            AARGG V+VLQWLHEL P++TQTTH +LK+AA           +A HDWRGG  XXXXXXXXAG+  AL HL R GS  DH+AF EAAA GQ ++M++ + E APL +   DA RRA + GQR SLEWLE  F    PWDE++FSCAA SG + LL+ LH   CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +GK EV +A  GD  RL+WLR RGH FH+PPDMWA  D    +WLH H FP + +A    +G  +A+ W+LYEVGS AWD  +C+AAA EGD T+L+LLH TCRATGGGHD         GG+ DVLRWARGE CA
Sbjct:  138 AARGGRVHVLQWLHELVPFSTQTTHSLLKSAASSGQIDALDWIIAGHDWRGGXXXXXXXXXXAGRFSALVHLRRHGSAWDHDAFEEAAAHGQTDMMDFLVSEDAPLSVD--DAYRRAAQCGQRESLEWLEVAFDGETPWDENVFSCAAISGSVELLRCLHAERCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHGLPVSGKLEVKLALEGDDERLEWLRVRGHWFHNPPDMWAAGDNIVKQWLHDHRFPYDTRAAIGVIGT-DAVDWILYEVGSGAWDERSCIAAAFEGDMTALSLLHTTCRATGGGHDXXXXXXXXXGGHMDVLRWARGEKCA 490          
BLAST of jgi.p|Trimin1|167002 vs. uniprot
Match: A0A835ZE15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE15_9STRA)

HSP 1 Score: 260 bits (664), Expect = 7.940e-78
Identity = 203/362 (56.08%), Postives = 226/362 (62.43%), Query Frame = 1
Query:    1 AARGGHVNVLQWLHELAPWNTQTTHDVLKNAAXXXXXXXXXXXMATHDWRGGGAXXXXXXXXAGKLGALQHLLRCGSEVDHNAFSEAAACGQVELMEWALVEGAPLPLRLRDACRRATRRGQRASLEWLESTFFAAPWDEDIFSCAAYSGDMTLLQWLHERGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGKTEVAMAARGDVSRLDWLRARGHVFHSPPDMWAVADFSTMRWLHKHEFPCNAQAMHAALGNAEAML--WLLYEVGSSAWDGSACVAAASEGDPTSLALLHMTCRATGGG------HDQEVCAAAAAGGYGDVLRWARGEGC 1062
            A RGG V+VL WLHELAPW  QTTH +LKNAA                WR G A         G+L ALQ L       DHN FSEAAA G++E+MEWA+   AP+ +   DA RRA R G RASLEWLE+ F+  PWD D+F+CAA SGD+ LL+WL  RGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                  GHVF SPP +WA AD +TMRWLH H   C+A+AM AAL  A+A    WLLY VG +AWD  ACVAAA  GD  SLA LH  CRA GG       HD+ VCAAAAAGG+  VLRWAR  GC
Sbjct:  179 AVRGGRVDVLHWLHELAPWTVQTTHCLLKNAATCGQTGVVEWLFGKRGWRDGAAAACAAAAATGQLPALQLLRAHYGRWDHNTFSEAAANGRLEVMEWAMRARAPVAVD--DAHRRAARYGARASLEWLEARFYGTPWDADVFACAAESGDVELLRWLCARGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------XXXAGHVFDSPPALWAAADLATMRWLHAHGLTCDARAMAAALERADATATRWLLYAVGGAAWDHRACVAAAFAGDLASLAPLHAACRAAGGXXXXXXXHDEAVCAAAAAGGHARVLRWARAAGC 508          
BLAST of jgi.p|Trimin1|167002 vs. uniprot
Match: A0A835YXM8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXM8_9STRA)

HSP 1 Score: 214 bits (546), Expect = 3.250e-62
Identity = 201/355 (56.62%), Postives = 224/355 (63.10%), Query Frame = 1
Query:    1 AARGGHVNVLQWLHELAPWNTQTTHDVLKNAAXXXXXXXXXXXMATHDWRGGGAXXXXXXXXAGKLGALQHLLRCGSEVDHNAFSEAAACGQVELMEWALVEGAPLPLRLRDACRRATRRGQRASLEWLESTFFAAPWDEDIFSCAAYSGDMTLLQWLHERGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGKTEVAMAARGDVSRLDWLRARGHVFHSPPDMWAVADFSTMRWLHKHEFPCNAQAMHAALGNAEAMLWLLYEVGSSAWDGSACVAAASEGDPTSLALLHMTCRATGGGHDQEVCAAAAAGGYGDVLRWARGEGCA 1065
            AA GGH +VLQWLHEL P +TQT H +LK AA           +A+HDW GG  XXXXXXXXAGKL  L  L   GS  DH+AF +AAA GQ E+MEW +   APL  R+ D                LE+ F   PWDE++FSCAA SG++ LL+WLH  GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    E+ M  R DVSRL+WLRARGH                                                  ++AWD  +C AAA  GD T+LALLH TCRATGGGHD EVCAAAAAGG+ DVLRWARGEGCA
Sbjct:   46 AACGGHTHVLQWLHELMPCSTQTAHSLLKIAASSGHIDALDWVVASHDWHGGXXXXXXXXXXAGKLAVLVRLRVHGSAWDHDAFEQAAANGQTEVMEWLICADAPL--RVDDXXXXXXXXXXXXXXXXLEAVFDETPWDENVFSCAAGSGNVELLRWLHAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIEMVERDDVSRLEWLRARGH--------------------------------------------------ATAWDERSCAAAAFAGDLTTLALLHTTCRATGGGHDAEVCAAAAAGGHSDVLRWARGEGCA 348          
BLAST of jgi.p|Trimin1|167002 vs. uniprot
Match: A0A835YTK1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTK1_9STRA)

HSP 1 Score: 209 bits (533), Expect = 2.810e-59
Identity = 207/358 (57.82%), Postives = 231/358 (64.53%), Query Frame = 1
Query:    1 AARGGHVNVLQWLHELAPWNTQTTHDVLKNAAXXXXXXXXXXXMATHDWRGGGAXXXXXXXXAGKLGALQHLLRCGSEVDHNAFSEAAACGQVELMEWALVEGAPLPLRLRDACRRATRRGQRASLEWLESTFFA-APWDEDIFSCAAYSGDMTLLQWLHERGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGKTEVAMAARGDVSRLDWLRARGHVFHSPPDMWAVADFSTMRWLHKHEFPCNAQAMHAAL--GNAEAMLWLLYEVGSSAWDGSACVAAASEGDPTSLALLHMTCRATGG-GHDQEVCAAAAAGGYGDVLRWARGEGC 1062
            AAR G V +LQWLHE              NAA   XXXXXXX +A HDWR GGA        AG+L AL+ L   G+                  MEW +  GAP+ + LR A R ATRRGQ ASLEWLE  F    PWDE IF+ AA SG++ LL  LH  GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  A KTE  MA RGDV+RL+WL ARGH F SPPDMWAVADF TMRWLHKH FPC+ +AM AAL  G+A+A+ WL  EVG    D  AC+AAA+ G P           A GG   D+ VC  A   G+ DVL+WA  +GC
Sbjct:  157 AARSGQVQILQWLHE--------------NAAFCGXXXXXXXLVARHDWRDGGAAACAAAAAAGELPALERLRAHGT------------------MEWLVDAGAPVHV-LR-AYRHATRRGQFASLEWLEDVFDGETPWDESIFAYAAESGNLALLDSLHADGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVAAKTEAEMAERGDVARLEWLHARGHAFQSPPDMWAVADFGTMRWLHKHRFPCDPRAMAAALERGDADAVRWLADEVGHGVCDYHACIAAAA-GTP-----------ARGGCAWDERVCTQARVNGHLDVLKWAVRKGC 468          
BLAST of jgi.p|Trimin1|167002 vs. uniprot
Match: A0A835YIJ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIJ4_9STRA)

HSP 1 Score: 201 bits (512), Expect = 2.730e-57
Identity = 164/356 (46.07%), Postives = 192/356 (53.93%), Query Frame = 1
Query:    1 AARGGHVNVLQWLHELAPWNTQTTHDVLKNAAXXXXXXXXXXXMATHDWRGGGAXXXXXXXXAGKLGALQHLLRCGSEVDHNAFSEAAACGQVELMEWALVEGAPLPLRLRDACRRATRRGQRASLEWLESTFFAAP-WDEDIFSCAAYSGDMTLLQWLHERGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGKTEVAMAARGDVSRLDWLRARGHVFHSPPDMWAVADFSTMRWLHKHEFPCNAQAMHAALGNAEAMLWLLYEVGSSAWDGSACVAAASEGDPTSLALLHMTCRATGGGHDQEVCAAAAAGGYGDVLRWARGEGCA 1065
            AARGG V+VLQWLHEL P++TQTTH +L++AA           +A HDWRGGGA        AG+L AL HL R G   DH+AF  AAA G+ ++M+  LV   P PL + DA RRA R GQR SLEWLE  F     WDE++FSCAA SG + LL+WLH  G XXXXXXXXXXXXXXXXXXXXXXXXXXXX                                        DV+                  +    F   +W + H  P                      VGS AWD  +CVAAASEGD T+L+LLH TCRATGGGHD+        GG+ DVLRWA+GEGCA
Sbjct:   60 AARGGRVHVLQWLHELMPFSTQTTHSLLESAASSGQIDALNWVIAGHDWRGGGAPACAAAAAAGRLAALVHLRRHGCAWDHDAFEVAAAHGRTDVMD-VLVSEDP-PLSVDDAYRRAARCGQRESLEWLEVVFDGGTLWDENVFSCAAISGSVELLRWLHAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMALDVC----------------------------------DVA------------------YEYDQFEAFKWAYSHGLP----------------------VGSGAWDERSCVAAASEGDLTALSLLHTTCRATGGGHDEXXXXXXXXGGHADVLRWAQGEGCA 339          
BLAST of jgi.p|Trimin1|167002 vs. uniprot
Match: A0A835ZAT3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAT3_9STRA)

HSP 1 Score: 191 bits (485), Expect = 5.280e-54
Identity = 97/139 (69.78%), Postives = 110/139 (79.14%), Query Frame = 1
Query:  658 AGKTEVAMAARGDVSRLDWLRARGHVFHSPPDMWAVADFSTMRWLHKHEFPCNAQAMHAAL--GNAEAMLWLLYEVGSSAWDGSACVAAASEGDPTSLALLHMTCRATGGG-HDQEVCAAAAAGGYGDVLRWARGEGCA 1065
            A KTE  MA RGDV+RL WLRARGH F SPPDMWAVADF TMRWL +H FPC+ +AM AAL  G+A+A+ WL++EVG +A D  AC+AAAS GD  SLA LH  CRATGGG HD +VCAAAAAGG+ DVLRWARG GCA
Sbjct:  135 AAKTEADMAERGDVARLKWLRARGHAFQSPPDMWAVADFGTMRWLQQHRFPCDERAMAAALERGDADAVRWLVHEVGHAACDHHACIAAASAGDLASLAPLHAACRATGGGGHDADVCAAAAAGGHMDVLRWARGAGCA 273          
BLAST of jgi.p|Trimin1|167002 vs. uniprot
Match: A0A836CMY9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMY9_9STRA)

HSP 1 Score: 166 bits (420), Expect = 5.200e-45
Identity = 98/164 (59.76%), Postives = 112/164 (68.29%), Query Frame = 1
Query:    1 AARGGHVNVLQWLHELAPWNTQTTHDVLKNAAXXXXXXXXXXXMATHDWRGGGAXXXXXXXXAGKLGALQHLLRCGSEVDHNAFSEAAACGQVELMEWALVEGAPLPLRLRDACRRATRRGQRASLEWLESTFF-AAPWDEDIFSCAAYSGDMTLLQWLHERGC 489
            AA GGHV+VLQWLHEL PW+T TTH +L+NAA           +A HDW GG  XXXXXXXXAG+L AL  L   GS  DHNAF EAAA GQ E+MEW ++  APL  R+ DA RRA   GQRASLEWLE  F    PWD ++FS AA SGD   L+WL+ERGC
Sbjct:   60 AACGGHVHVLQWLHELMPWSTHTTHSLLENAACSGQIDALDWLVAGHDWHGGXXXXXXXXXXAGELAALVRLRVQGSAWDHNAFEEAAANGQTEVMEWLVIARAPL--RVNDAYRRAAWCGQRASLEWLEDVFDRVTPWDANVFSRAAESGDAAQLRWLYERGC 221          
BLAST of jgi.p|Trimin1|167002 vs. uniprot
Match: A0A835ZCE3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCE3_9STRA)

HSP 1 Score: 138 bits (348), Expect = 4.750e-33
Identity = 73/119 (61.34%), Postives = 86/119 (72.27%), Query Frame = 1
Query:  715 LRARGHVFHSPPDMWAVADFSTMRWLHKHEFPCNAQAMHAAL--GNAEAMLWLLYEVGSSAWDGSACVAAASEGDPTSLALLHMTCRATGGGHDQEVCAAAAAGGYGDVLRWARGEGCA 1065
            L+  G    +  +  A A     R  H H FPC+ +AMHAAL  G+A A+  LL++VGS AWDGSACVAAA+ GD TSLALLH TCRATGGGHD++VC AAAAGGY D +RWARGEGCA
Sbjct:  274 LQLMGDTVRAACNTAAGACAGCTRTDHAHGFPCDERAMHAALASGDAAAVRLLLFDVGSDAWDGSACVAAAAAGDLTSLALLHATCRATGGGHDEDVCVAAAAGGYSDAMRWARGEGCA 392          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167002 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A836CCJ3_9STRA2.290e-221100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YTI3_9STRA5.300e-9957.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YS69_9STRA2.440e-9162.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZE15_9STRA7.940e-7856.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YXM8_9STRA3.250e-6256.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YTK1_9STRA2.810e-5957.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YIJ4_9STRA2.730e-5746.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZAT3_9STRA5.280e-5469.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CMY9_9STRA5.200e-4559.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCE3_9STRA4.750e-3361.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_47contigContig_47:121748..122998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167002|e_gw1.47.43.1
Hectar predicted targeting categoryother localisation
TranscriptId167324
TrackFilteredModels1
ProteinId167002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167002gene_6184Tribonema minus UTEX_B_3156 geneContig_47 121748..122998 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6184_1exon_6184_1Tribonema minus UTEX_B_3156 exonContig_47 121748..122998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6184CDS_6184Tribonema minus UTEX_B_3156 CDSContig_47 121748..122998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167002Trimin1|167002|e_gw1.47.43.1Tribonema minus UTEX_B_3156 polypeptideContig_47 121748..122998 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6184 ID=mRNA_6184|Name=jgi.p|Trimin1|167002|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1251bp|location=Sequence derived from alignment at Contig_47:121748..122998+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGGCGCGGGGCGGCCACGTGAACGTGCTGCAGTGGCTACACGAGCTCGC
GCCATGGAACACGCAGACTACCCATGATGTCCTCAAAAACGCCGCCTCCG
GTGGCCATGTCAATGCACTCGAATGGCTCATGGCGACGCATGACTGGCGC
GGCGGTGGTGCCGCAGCTTGCGCAGCTGCCGCCGCAGCAGGCAAGCTTGG
CGCGCTTCAACACCTGCTCAGATGCGGCAGCGAGGTGGACCACAATGCGT
TTTCCGAAGCCGCAGCCTGCGGTCAGGTGGAGTTGATGGAATGGGCGCTT
GTCGAAGGCGCGCCACTCCCATTGAGGCTCAGGGATGCCTGCCGGCGTGC
AACGCGGCGAGGGCAGCGCGCATCGCTGGAGTGGCTTGAATCCACGTTCT
TTGCGGCGCCGTGGGACGAGGACATCTTCTCATGCGCTGCATACAGCGGC
GACATGACGCTGCTGCAGTGGCTCCACGAGCGCGGGTGCCCATGGGACGA
TCACGCAAGCCGCATCGCCGCCATTTATGGCGACATAGTCGTACTGGAGT
GGCTTCGCACTGCCGGCGCGCCTATCGCGGTCGACGCATGCGACGTTGCG
TACGACTGCGAGGAGATGAATGCCTTTGAGTGGGCGTACGGCCATGGTTT
GCCCATCGCGGGCAAAACGGAGGTGGCCATGGCCGCGCGAGGCGACGTGT
CTCGGCTAGACTGGCTGCGGGCCAGGGGGCACGTGTTCCACAGCCCCCCT
GACATGTGGGCTGTGGCTGACTTCAGCACCATGCGCTGGCTGCACAAGCA
CGAGTTCCCGTGCAATGCGCAAGCCATGCACGCGGCGCTTGGCAACGCGG
AAGCCATGCTGTGGCTGCTGTACGAAGTCGGCAGCAGCGCCTGGGACGGC
AGCGCGTGCGTCGCCGCGGCCTCCGAGGGCGACCCGACGTCGCTGGCGCT
GCTGCACATGACCTGCCGCGCAACGGGTGGCGGCCATGATCAGGAGGTGT
GCGCGGCGGCGGCGGCAGGCGGGTACGGGGATGTGTTGCGGTGGGCACGT
GGGGAAGGGTGCGCATGGGACCAGCGGGTGTGCGTGGAGGCGCGAGTAAA
TGGCCACCTGGACGTGCTCAGGTGGGCCTTTGGAGAGGCTATCCGTGTGG
TGAGGCAGAGCTGCGGTGCCTGTCGTAGCGAAAGGAGGGGGCAAGGATGG
CGAACGCAGCAGCTGCTAGCGCTTTGCGCGGATGCTGCCGCACGTTGCTG
A
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protein sequence of jgi.p|Trimin1|167002

>Trimin1|167002|e_gw1.47.43.1 ID=Trimin1|167002|e_gw1.47.43.1|Name=jgi.p|Trimin1|167002|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=417bp
AARGGHVNVLQWLHELAPWNTQTTHDVLKNAASGGHVNALEWLMATHDWR
GGGAAACAAAAAAGKLGALQHLLRCGSEVDHNAFSEAAACGQVELMEWAL
VEGAPLPLRLRDACRRATRRGQRASLEWLESTFFAAPWDEDIFSCAAYSG
DMTLLQWLHERGCPWDDHASRIAAIYGDIVVLEWLRTAGAPIAVDACDVA
YDCEEMNAFEWAYGHGLPIAGKTEVAMAARGDVSRLDWLRARGHVFHSPP
DMWAVADFSTMRWLHKHEFPCNAQAMHAALGNAEAMLWLLYEVGSSAWDG
SACVAAASEGDPTSLALLHMTCRATGGGHDQEVCAAAAAGGYGDVLRWAR
GEGCAWDQRVCVEARVNGHLDVLRWAFGEAIRVVRQSCGACRSERRGQGW
RTQQLLALCADAAARC*
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mRNA from alignment at Contig_47:121748..122998+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6184 ID=mRNA_6184|Name=jgi.p|Trimin1|167002|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1251bp|location=Sequence derived from alignment at Contig_47:121748..122998+ (Tribonema minus UTEX_B_3156 )
GCGGCGCGGGGCGGCCACGTGAACGTGCTGCAGTGGCTACACGAGCTCGC GCCATGGAACACGCAGACTACCCATGATGTCCTCAAAAACGCCGCCTCCG GTGGCCATGTCAATGCACTCGAATGGCTCATGGCGACGCATGACTGGCGC GGCGGTGGTGCCGCAGCTTGCGCAGCTGCCGCCGCAGCAGGCAAGCTTGG CGCGCTTCAACACCTGCTCAGATGCGGCAGCGAGGTGGACCACAATGCGT TTTCCGAAGCCGCAGCCTGCGGTCAGGTGGAGTTGATGGAATGGGCGCTT GTCGAAGGCGCGCCACTCCCATTGAGGCTCAGGGATGCCTGCCGGCGTGC AACGCGGCGAGGGCAGCGCGCATCGCTGGAGTGGCTTGAATCCACGTTCT TTGCGGCGCCGTGGGACGAGGACATCTTCTCATGCGCTGCATACAGCGGC GACATGACGCTGCTGCAGTGGCTCCACGAGCGCGGGTGCCCATGGGACGA TCACGCAAGCCGCATCGCCGCCATTTATGGCGACATAGTCGTACTGGAGT GGCTTCGCACTGCCGGCGCGCCTATCGCGGTCGACGCATGCGACGTTGCG TACGACTGCGAGGAGATGAATGCCTTTGAGTGGGCGTACGGCCATGGTTT GCCCATCGCGGGCAAAACGGAGGTGGCCATGGCCGCGCGAGGCGACGTGT CTCGGCTAGACTGGCTGCGGGCCAGGGGGCACGTGTTCCACAGCCCCCCT GACATGTGGGCTGTGGCTGACTTCAGCACCATGCGCTGGCTGCACAAGCA CGAGTTCCCGTGCAATGCGCAAGCCATGCACGCGGCGCTTGGCAACGCGG AAGCCATGCTGTGGCTGCTGTACGAAGTCGGCAGCAGCGCCTGGGACGGC AGCGCGTGCGTCGCCGCGGCCTCCGAGGGCGACCCGACGTCGCTGGCGCT GCTGCACATGACCTGCCGCGCAACGGGTGGCGGCCATGATCAGGAGGTGT GCGCGGCGGCGGCGGCAGGCGGGTACGGGGATGTGTTGCGGTGGGCACGT GGGGAAGGGTGCGCATGGGACCAGCGGGTGTGCGTGGAGGCGCGAGTAAA TGGCCACCTGGACGTGCTCAGGTGGGCCTTTGGAGAGGCTATCCGTGTGG TGAGGCAGAGCTGCGGTGCCTGTCGTAGCGAAAGGAGGGGGCAAGGATGG CGAACGCAGCAGCTGCTAGCGCTTTGCGCGGATGCTGCCGCACGTTGCTG A
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Coding sequence (CDS) from alignment at Contig_47:121748..122998+

>mRNA_6184 ID=mRNA_6184|Name=jgi.p|Trimin1|167002|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1251bp|location=Sequence derived from alignment at Contig_47:121748..122998+ (Tribonema minus UTEX_B_3156 )
GCGGCGCGGGGCGGCCACGTGAACGTGCTGCAGTGGCTACACGAGCTCGC
GCCATGGAACACGCAGACTACCCATGATGTCCTCAAAAACGCCGCCTCCG
GTGGCCATGTCAATGCACTCGAATGGCTCATGGCGACGCATGACTGGCGC
GGCGGTGGTGCCGCAGCTTGCGCAGCTGCCGCCGCAGCAGGCAAGCTTGG
CGCGCTTCAACACCTGCTCAGATGCGGCAGCGAGGTGGACCACAATGCGT
TTTCCGAAGCCGCAGCCTGCGGTCAGGTGGAGTTGATGGAATGGGCGCTT
GTCGAAGGCGCGCCACTCCCATTGAGGCTCAGGGATGCCTGCCGGCGTGC
AACGCGGCGAGGGCAGCGCGCATCGCTGGAGTGGCTTGAATCCACGTTCT
TTGCGGCGCCGTGGGACGAGGACATCTTCTCATGCGCTGCATACAGCGGC
GACATGACGCTGCTGCAGTGGCTCCACGAGCGCGGGTGCCCATGGGACGA
TCACGCAAGCCGCATCGCCGCCATTTATGGCGACATAGTCGTACTGGAGT
GGCTTCGCACTGCCGGCGCGCCTATCGCGGTCGACGCATGCGACGTTGCG
TACGACTGCGAGGAGATGAATGCCTTTGAGTGGGCGTACGGCCATGGTTT
GCCCATCGCGGGCAAAACGGAGGTGGCCATGGCCGCGCGAGGCGACGTGT
CTCGGCTAGACTGGCTGCGGGCCAGGGGGCACGTGTTCCACAGCCCCCCT
GACATGTGGGCTGTGGCTGACTTCAGCACCATGCGCTGGCTGCACAAGCA
CGAGTTCCCGTGCAATGCGCAAGCCATGCACGCGGCGCTTGGCAACGCGG
AAGCCATGCTGTGGCTGCTGTACGAAGTCGGCAGCAGCGCCTGGGACGGC
AGCGCGTGCGTCGCCGCGGCCTCCGAGGGCGACCCGACGTCGCTGGCGCT
GCTGCACATGACCTGCCGCGCAACGGGTGGCGGCCATGATCAGGAGGTGT
GCGCGGCGGCGGCGGCAGGCGGGTACGGGGATGTGTTGCGGTGGGCACGT
GGGGAAGGGTGCGCATGGGACCAGCGGGTGTGCGTGGAGGCGCGAGTAAA
TGGCCACCTGGACGTGCTCAGGTGGGCCTTTGGAGAGGCTATCCGTGTGG
TGAGGCAGAGCTGCGGTGCCTGTCGTAGCGAAAGGAGGGGGCAAGGATGG
CGAACGCAGCAGCTGCTAGCGCTTTGCGCGGATGCTGCCGCACGTTGCTG
A
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