mRNA_6176 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349666
Unique NamemRNA_6176
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|349666 vs. uniprot
Match: A0A835YRH5_9STRA (Paf1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH5_9STRA)

HSP 1 Score: 941 bits (2432), Expect = 0.000e+0
Identity = 572/572 (100.00%), Postives = 572/572 (100.00%), Query Frame = 1 
Query:    1 MATLQPMETDMASQLQPPXXXXXXXXXXXXXXXXXXXXXXXADGVPPDSSRHREESSKEKEDXXXXXXXXXXXXXXXXXXXXXXXXXKVLEQQKIQTARRKWQKDSEFLCHLKFRNNLPDPPLGPHFLKIPLSMDKLVQYTPTTLETQHKWKLHCNRDLGVDIDIIDSRSYSVPDKPPTLHPKDAELLQWDKVERGNGAAEAEEGFSRRMQRKQVDTSVTWLKKTVYLTNDPFDAVHKFRSDRQVQMDAKERMQKDMEESRKTDRVSAVLQSFAEANSKKKLVHATNKSLTPEWVMPVLPDAALWGNTYTHVVFDIDPIEEEHLIAGPRQRKRQRADKAIVGNVRKLRKSDGDEFVTGSYMVPKEAGEGGGGXSAEXXEKGAEGGTGFAWVKDYQMNVQNYPAGQGDSGSGSSGAMAHLVFIIDQASSKATFCQLSARVDLANLPAEDQANRGPGMEVARRPPSDEEFQAMGEKVAKDLGVLAAKHMRRAAADAAAVSSRGAGEGVRGGRXXXXXXXXXXXXXXXXXXXXXSVMTEHLESEGSNVAVKGTDTSEGDEMSRVGMDDSDEDGLN 1716
            MATLQPMETDMASQLQPPXXXXXXXXXXXXXXXXXXXXXXXADGVPPDSSRHREESSKEKEDXXXXXXXXXXXXXXXXXXXXXXXXXKVLEQQKIQTARRKWQKDSEFLCHLKFRNNLPDPPLGPHFLKIPLSMDKLVQYTPTTLETQHKWKLHCNRDLGVDIDIIDSRSYSVPDKPPTLHPKDAELLQWDKVERGNGAAEAEEGFSRRMQRKQVDTSVTWLKKTVYLTNDPFDAVHKFRSDRQVQMDAKERMQKDMEESRKTDRVSAVLQSFAEANSKKKLVHATNKSLTPEWVMPVLPDAALWGNTYTHVVFDIDPIEEEHLIAGPRQRKRQRADKAIVGNVRKLRKSDGDEFVTGSYMVPKEAGEGGGGXSAEXXEKGAEGGTGFAWVKDYQMNVQNYPAGQGDSGSGSSGAMAHLVFIIDQASSKATFCQLSARVDLANLPAEDQANRGPGMEVARRPPSDEEFQAMGEKVAKDLGVLAAKHMRRAAADAAAVSSRGAGEGVRGGRXXXXXXXXXXXXXXXXXXXXXSVMTEHLESEGSNVAVKGTDTSEGDEMSRVGMDDSDEDGLN
Sbjct:    1 MATLQPMETDMASQLQPPXXXXXXXXXXXXXXXXXXXXXXXADGVPPDSSRHREESSKEKEDXXXXXXXXXXXXXXXXXXXXXXXXXKVLEQQKIQTARRKWQKDSEFLCHLKFRNNLPDPPLGPHFLKIPLSMDKLVQYTPTTLETQHKWKLHCNRDLGVDIDIIDSRSYSVPDKPPTLHPKDAELLQWDKVERGNGAAEAEEGFSRRMQRKQVDTSVTWLKKTVYLTNDPFDAVHKFRSDRQVQMDAKERMQKDMEESRKTDRVSAVLQSFAEANSKKKLVHATNKSLTPEWVMPVLPDAALWGNTYTHVVFDIDPIEEEHLIAGPRQRKRQRADKAIVGNVRKLRKSDGDEFVTGSYMVPKEAGEGGGGXSAEXXEKGAEGGTGFAWVKDYQMNVQNYPAGQGDSGSGSSGAMAHLVFIIDQASSKATFCQLSARVDLANLPAEDQANRGPGMEVARRPPSDEEFQAMGEKVAKDLGVLAAKHMRRAAADAAAVSSRGAGEGVRGGRXXXXXXXXXXXXXXXXXXXXXSVMTEHLESEGSNVAVKGTDTSEGDEMSRVGMDDSDEDGLN 572
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BLAST of jgi.p|Trimin1|349666 vs. uniprot
Match: D7FXY8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXY8_ECTSI)

HSP 1 Score: 335 bits (860), Expect = 7.620e-105
Identity = 220/516 (42.64%), Postives = 299/516 (57.95%), Query Frame = 1 
Query:  265 VLEQQKIQTARRKWQKDSEFLCHLKFRNNLPDPPLGPHFLKIPLSMDKLVQYTPTTLETQHKWKLHCNRDLGVDIDIIDSRSYSVPDKPPTLHPKDAELLQWDKVERGNGAAEAEEGFSRRMQRKQVDTSVTWLKKTVYLTNDPFDAVHKFRSDRQVQMDAKERMQKDMEESRKTDRVSAVLQSFAEANSKKKLVH--ATNKSLTPEWVMPVLPDAALWGNTYTHVVFDIDPIEEEHLIAGPRQRKRQRADKAIVGNVRKLR-KSDGDEFVTGSYMVPK----EAGEGGGGXSAEXXEKGAE---GGTGFAWVKDYQMNVQNYPAGQGDSGSGSSGAMAHLVFIIDQASSKATFCQLSARVDLANLP-AEDQANRGPGMEVARRPPSDEEFQAMGEKVAKDLGVLAAKHMRRAAADAAAVSSRGAGEGV------------------------RGGRXXXXXXXXXXXXXXXXXXXXXSVMTEHLESEGSNVAVKGTDTSEGDEMSRVGMDDSDED 1707
            VLE QKI  ARRKWQK +EFLC +KFRN+LPDPPLGPHFL +PL +   V+Y PTTLE+ +KWKLH  RDLGV ID+ID R+Y +P K   L P+D  LL W + + G G+ + E+  S   +RK VDTSVTWLKKTVYLTNDPFD VH+F+S++Q Q D +  ++K++   +K DR   + +SF  ANS K LVH  A+ + LT EWVMPV+PD +LW NTYT V+FD DP  +E  + G   RKR+RA +A+V NV++   + +  E +TGSY++PK    + GEG   X   XX    +   G  G+ +VKDY+ N+ +Y   Q D          HL+F+I++ + +A+FC+LSA+V+LANLP  + Q   G G  V++R  S EE     +KV+ DL +    ++  A  D  +     AG                           R                        SV++  +ESE SNVAVKGT++SEGD       DD D +
Sbjct:    5 VLEDQKINKARRKWQKQTEFLCTIKFRNSLPDPPLGPHFLDVPLDLQSYVKYKPTTLESDYKWKLHYERDLGVPIDVIDPRNYLLPKKAVPLPPEDEALLNWREGD-GPGSVKKED-LSTSARRKTVDTSVTWLKKTVYLTNDPFDPVHQFKSEQQTQADKEVELEKEIARGKKQDRKMLIEESFLHANSNKPLVHQDASKRHLTAEWVMPVMPDVSLWPNTYTTVMFDKDPAADE-TVKGSEARKRKRAGEALVCNVKRTTFEGNSHEVITGSYLMPKGKATKKGEGXXXXXXXXXXXKMDVEDGSVGYDFVKDYKFNIVHYAQTQYDGNP-------HLLFVINKDTQEASFCKLSAKVELANLPRGQGQPATGRGAVVSKRSLSPEEVSNARKKVSADLQLEGEYYI--AGEDGLSNGGHAAGGDTGXXXXXXXXXXXXXXXXXENGHANRSEAGLNGHSDESRAWNGTSDVDRESVLSMTMESEASNVAVKGTESSEGDIAGAHTDDDEDSE 508
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BLAST of jgi.p|Trimin1|349666 vs. uniprot
Match: A0A7S2D5H7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D5H7_9STRA)

HSP 1 Score: 149 bits (376), Expect = 5.660e-36
Identity = 109/329 (33.13%), Postives = 163/329 (49.54%), Query Frame = 1 
Query:  262 KVLEQQKIQTARRKWQ-KDSEFLCHLKFRNNLPDPPLGPHFLKIPLSMDKLVQYTPTTLETQHKWKLHCNRDLGVDIDIIDSRSY--SVPDKPPTLHPKDAELLQWDKVERGNGAAEAEEGFSRRMQRKQVDTSVTWLKKTVYLTNDPFDAVHKFRSDRQVQMDAKERMQKDMEESRKTDRVSAVLQSFAEA---NSKK-------KLVHAT--NKSLTPEWVMPVLPDAALWGNTYTHVVFDIDPIEEEHLIAGPRQRKRQRADKAIVGNVRKLRKSDGDEFVT-GSYMVPKEAGEGGGGXSAEXXEKGAEGGTGFAWVKDYQMNVQN 1200
            +VL +Q    ARR+++ K   F+C++  RN LP+P  GP   ++P  +   V++ PT+L+T +KWK HC R LGV +D++D  ++     +K P LHP D  +L W + ++G G   A+E                WL  T + +ND    VHKF+S  QV  +  ER+ +          ++  L + AE    N++K       KLV A    K LT EWVMPVLPDA LW N + HV F++DP       A    RKR R    ++ N + +        VT GS+++P E G      SA   E+       F W + YQ+  ++
Sbjct:   27 RVLGEQAAADARRRFRSKIPHFVCNMPLRNRLPEPLPGPKLAQLPTDLQSFVEFNPTSLDTDYKWKHHCERTLGVSVDLVDLEAHRPQPKEKRPQLHPDDDRILNW-RGKQGGGGGRAKEHV--------------WLLNTSFTSNDLTQQVHKFKSGSQVMKEEHERIVQ----------INNALGTDAETLTENAEKSFDVPFDKLVEAAARRKGLTAEWVMPVLPDARLWANDFVHVDFEVDP-------APSNPRKRARVAGGMLVNAKPVYNEKQQTNVTKGSFILPMEEG------SAGEHEEQV-----FEWERQYQVETKD 312
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BLAST of jgi.p|Trimin1|349666 vs. uniprot
Match: A0A7S3YBK4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YBK4_HETAK)

HSP 1 Score: 134 bits (337), Expect = 9.060e-33
Identity = 63/110 (57.27%), Postives = 80/110 (72.73%), Query Frame = 1 
Query:  262 KVLEQQKIQTARRKWQKDSEFLCHLKFRNNLPDPPLGPHFLKIPLSMDKLVQYTPTTLETQHKWKLHCNRDLGVDIDIIDSRSYSVPD-KPPTLHPKDAELLQWDKVERG 588
            KVLE+QKIQ AR+KWQK++EFLC LKFRN LP+P LGP+ L IP  +D+L +Y P +L+  +KW+LHC RDLGV ID+ID   Y VP   PP + P D  LL+W + E G
Sbjct:   77 KVLEEQKIQKARKKWQKNTEFLCTLKFRNTLPEPHLGPNLLDIPFPIDELTEYRPNSLDVNYKWQLHCERDLGVPIDLIDPARYLVPPGTPPPMDPADRALLEWREEEEG 186
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BLAST of jgi.p|Trimin1|349666 vs. uniprot
Match: A0A3R7J8I8_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J8I8_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.240e-32
Identity = 107/364 (29.40%), Postives = 170/364 (46.70%), Query Frame = 1 
Query:  310 KDSEFLCHLKFRNNLPDPPLGPHFLKIPLSMDKLVQYTPTTLETQHKWKLHCNRDLGVDIDIIDSRSYSVPDKPPTLHPKDAELLQWDKVERGNGAAEAEEGFSRRMQRKQVDTSVTWLKKTVYLTNDPFDAVHKFRSDRQVQMDAKERMQKDMEESRKTDRVSAVLQSFAEANSKKKLVHATNKSLTPEWVMPVLPDAALWGNTYTHVVFDIDPIEEEHLIAGPRQRKRQRADKAIVGNVRKLRKSDGDEFVTGSYMVPKEAGEGGGGXSAEXXEKGAEGGTGFAWVKDYQMNVQNYPAGQGDSGSGSSGAMAHLVFIIDQASSKATFCQLSARVDLANLPAEDQANRGPGMEVARRPPSDEE 1401
            K SEFL  L+FRN LPD P    F++ P   ++L++Y P +LE  + +++H   +LG+ ID+ID   Y  P+KP +L   D ++L   +   G               R +   +V+WL++T Y+ ND +DAVHKF+S+ ++Q   +E  +  + E            SF + N  K LVH  NK         V PD  L  N Y  + +DI P E+             R D+A++  V K  ++ G+E + GS ++P          S+E  E        FA++++Y M+V++    +  S         H VF++D  S + T+  L  R+ L       +  R  G  V RR  S+ E
Sbjct:   90 KQSEFLATLEFRNALPDIPFDTKFVQYPHEPERLIKYKPNSLEMDYTYEIHEEANLGLPIDLIDPAKYEAPEKPASLEVGDEQVLMMKEEHVGKTG------------RSKARPTVSWLRRTEYMGNDLYDAVHKFKSEAEIQSALREGTENALAEVVSVTLEDRAEASFRDINEPKLLVHPFNKKKKIAKTWDVFPDQVLSANKYAILSYDILPSEDVKSKGIT-----SREDRALLCGVSKKIQA-GNELIQGSILLPN--------TSSEEEENADR--EKFAYLREYLMSVESLDPRETQS--------QHCVFMLDPESDQFTYSDLLTRIQLRKTKMTGEEKRRHGAVVRRRDYSEGE 417
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BLAST of jgi.p|Trimin1|349666 vs. uniprot
Match: A0A5D6XM87_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XM87_9STRA)

HSP 1 Score: 140 bits (354), Expect = 4.690e-32
Identity = 110/355 (30.99%), Postives = 165/355 (46.48%), Query Frame = 1 
Query:  310 KDSEFLCHLKFRNNLPDPPLGPHFLKIPLSMDKLVQYTPTTLETQHKWKLHCNRDLGVDIDIIDSRSYSVPDKPPTLHPKDAELLQWDKVERGNGAAEAEEGFSRRMQRKQVDTSVTWLKKTVYLTNDPFDAVHKFRSDRQVQMDAKERMQKDMEESRKTDRVSAVLQSFAEANSKKKLVHATNKSLTPEWVMPVLPDAALWGNTYTHVVFDIDP---IEEEHLIAGPRQRKRQRADKAIVGNVRKLRKSDGDEFVTGSYMVPKEAGEGGGGXSAEXXEKGAEGGTGFAWVKDYQMNVQNYPAGQGDSGSGSSGAMAHLVFIIDQASSKATFCQLSARVDL--ANLPAEDQANRG 1359
            K SEFL  L+FRN LPD P    FLK P   ++L++Y P TLE  + +++H   +LG+ +D+ID   Y  P  P  L   D ++L   +     G  +A               +V WL++T Y+  D +DAVHKF+S+ ++Q   +E  +  + E            SF + N+ K  VH  NK L    V  VLPD  L  N YT + +DI P   I+ +++        ++R  +A++  V K  K  GD  + GS ++P    E       E  E+ AE    FA+ ++Y M V+N                 H VFI D  S + T+  +  R+ L    L  ED+  RG
Sbjct:   90 KQSEFLATLEFRNALPDLPFDTKFLKYPHESERLIKYKPNTLEADYTYEIHEEANLGLSVDLIDPAKYEAPVNPGKLEVGDEQVLMMKEESNKAGKTKAR-------------PAVPWLRRTEYMGTDLYDAVHKFKSEVEIQSALREGTENALAEVVNITLEDRAEASFKDINNPKTFVHPFNKKLKVAKVWDVLPDPLLAANKYTVLSYDILPSTDIKSKNI--------KEREARALLSGVTK--KGQGDS-IQGSILLPSAVNE----EEKEQDEQHAEK---FAYFREYLMAVENLERSDSQ----------HTVFIFDPESEQFTYSDILHRIQLKKTRLNGEDKRRRG 403
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BLAST of jgi.p|Trimin1|349666 vs. uniprot
Match: K3W793_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W793_GLOUD)

HSP 1 Score: 139 bits (349), Expect = 2.320e-31
Identity = 105/355 (29.58%), Postives = 170/355 (47.89%), Query Frame = 1 
Query:  310 KDSEFLCHLKFRNNLPDPPLGPHFLKIPLSMDKLVQYTPTTLETQHKWKLHCNRDLGVDIDIIDSRSYSVPDKPPTLHPKDAELLQWDKVERGNGAAEAEEGFSRRMQRKQVDTSVTWLKKTVYLTNDPFDAVHKFRSDRQVQMDAKERMQKDMEESRKTDRVSAVLQSFAEANSKKKLVHATNKSLTPEWVMPVLPDAALWGNTYTHVVFDIDP---IEEEHLIAGPRQRKRQRADKAIVGNVRKLRKSDGDEFVTGSYMVPKEAGEGGGGXSAEXXEKGAEGGTGFAWVKDYQMNVQNYPAGQGDSGSGSSGAMAHLVFIIDQASSKATFCQLSARVDL--ANLPAEDQANRG 1359
            K SEFL +L+FRN LPD P    FL+ P   ++L++Y P TLE  + +++H   +LG++ID+ID   Y  P  P  L   D + L   +     G  +A               +V+WL++T Y+  D +DAVHKF+S+ ++Q   +E  +  + E  +         SF + N+   LVH  NK L    V  VLPD  L  N Y  + +DI P   I+ +++        + R  +A++  V K  KS G +++ GS ++P  + E       E  E+       FA+ ++Y M+V++  + +            H VF+ D  S + T+  +  R+ L    L  ED+  RG
Sbjct:  110 KQSEFLANLEFRNALPDLPFDTKFLQYPHENERLIKYKPNTLEADYTYEIHEEANLGLNIDLIDPAKYEAPTVPVKLEIGDEQALMMKEETNKAGKTKAR-------------PAVSWLRRTEYMGTDLYDAVHKFKSEVEIQSALREGTENALAEVVQITLEQRAEASFKDINNPATLVHPFNKKLKIAKVWDVLPDQLLSSNKYAILSYDILPSTDIKSKNI--------KDREARALLSGVSK--KSQGGDYIQGSILLPNASNE------EEHKEQXXXEVEKFAYFREYLMSVESLESNETQ----------HSVFMFDPESDQFTYSDILHRIQLKKTKLNGEDKRRRG 425
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BLAST of jgi.p|Trimin1|349666 vs. uniprot
Match: A0A1V9ZA09_9STRA (RNA polymerase II-associated factor 1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZA09_9STRA)

HSP 1 Score: 135 bits (341), Expect = 7.170e-31
Identity = 112/394 (28.43%), Postives = 182/394 (46.19%), Query Frame = 1 
Query:  262 KVLEQQKIQTARRKWQKDSEFLCHLKFRNNLPDPPLGPHFLKIPLSMDKLVQYTPTTLETQHKWKLHCNRDLGVDIDIIDSRSYSVPDKPPTLHPKDAELLQWDKVERGNGAAEAEEGFSRRMQRKQVDTSVTWLKKTVYLTNDPFDAVHKFRSDRQVQMDAKERMQKDMEESRKTDRVSAVLQSFAEANSKKKLVHATNKSLTPEWVMPVLPDAALWGNTYTHVVFDIDPIEEEHLIAGPRQRKRQRADKAIVGNVRKLRKSDGDEFVTGSYMVPKEAGEGGGGXSAEXXEKGAEGGTGFAWVKDYQMNVQNYPAGQGDSGSGSSGAMAHLVFIIDQASSKATFCQLSARVDLANLPAEDQANRGPGMEVARRPPSDEEFQAMGEKVAKDLGV 1443
            KVLEQQ  +  R    + SEFL  L+FRN LPD P    FL  P    + V+Y P  +E    W+    R+LG+++D+ID   Y VP   P + P+D  L+   ++  G+   +A           ++   V+WL++T Y+  D  +AVH+F+++ ++Q + +++ Q  +  S   D      +SF    +K+ + H   KSL    V  V PD  L  N Y+ + +DI P +E  L A  ++R+ +    +I+ NV  +    G + + GS + P          S E           F + +DY +N+ ++PA            +  L+ ++   S+ AT+C LS  + L          R  G  V RR  SD E +   E +A   GV
Sbjct:   49 KVLEQQAQEKRRVLLGRQSEFLGTLEFRNTLPDVPFDAKFLSYPADPQRFVKYKPNQVEKDFVWEFFPERNLGLNVDLIDPEKYEVP-VDPQMDPEDLALINMPEIVNGSSITKA-----------KIRPHVSWLRRTEYMGTDLSEAVHQFKNENELQTEIRDKNQSML--SVIADIEVRAEKSFENCPTKETVKHPLKKSLKAAQVWDVFPDELLSSNVYSILSYDILPSDET-LDASIKEREAR----SILRNVVTV-SQPGSDVLLGSILFPSAHNNSDDNGSPEK----------FKFFRDYVLNISHFPA-----------EVQQLMLMLKPGSTSATYCSLSTNIGLKKTKLGGDEKRRRGAVVHRRAYSDAEEEKRLESLAAVGGV 401
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BLAST of jgi.p|Trimin1|349666 vs. uniprot
Match: A0A7S3YEK7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEK7_HETAK)

HSP 1 Score: 113 bits (282), Expect = 1.460e-24
Identity = 80/237 (33.76%), Postives = 120/237 (50.63%), Query Frame = 1 
Query:  628 MQRKQVDTSVTWLKKTVYLTNDPFDA-VHKFRSDRQVQMDAKERMQKDMEESRKTDRVSAVLQSF-AEANSKKKLVHATNKSLTPEWVMPVLPDAALWGNTYTHVVFDIDPIEEEHLIAGPRQ--RKRQRADKAIVGNVRKLRKSDGDEFV-TGSYMVPKEAGEGGGGXSAEXXEKGAEGGTGFAWVKDYQMNVQNYPAGQGDSGSGSSGAMAHLVFIIDQASSKATFCQLSARVDL 1323
            ++RK VDT+VTW+K+T YL+ND + A VH F+S      +    + ++M E       + +  +F A A     L H TN  L  EW +PVLPD  LW N + HV FD+DP+ ++     P     K+QR +KAI+ +VR+       + V   SY+VPK AG+ G G   E           F  ++ YQ++V++                   VF++D    +AT+C+L  RVDL
Sbjct:    7 LKRKSVDTNVTWMKRTTYLSNDLYGAPVHAFKSQAAAVAEQNAGLDQEMVEVNLQSAATKIEATFHAAAKDLAALRHPTNPGLRAEWALPVLPDVGLWANVFMHVGFDLDPVTQDDPNKDPEHIAEKKQRFEKAIISDVRENEGGGTSKPVMVASYLVPK-AGQTGAGEGGELA---------FEHLRGYQIDVRDTEN--------------TFVFLVDAEGGQATYCRLDTRVDL 219
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BLAST of jgi.p|Trimin1|349666 vs. uniprot
Match: A0A662XQX2_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQX2_9STRA)

HSP 1 Score: 113 bits (283), Expect = 7.830e-23
Identity = 103/393 (26.21%), Postives = 173/393 (44.02%), Query Frame = 1 
Query:  310 KDSEFLCHLKFRNNLPDPPLGPHFLKIPLSMDKLVQYTPTTLETQHKWKLHCNRDLGVDIDIIDSRSYS----------------------------VPDKPPTLHPKDAELLQWDKVERGNGAAEAEEGFSRRMQRKQVDTSVTWLKKTVYLTNDPFDAVHKFRSDRQVQMDAKERMQKDMEESRKTDRVSAVLQSFAEANSKKKLVHATNKSLTPEWVMPVLPDAALWGNTYTHVVFDIDPIEEEHLIAGPRQRKRQRADKAIVGNVRKLRKSDGDEFVTGSYMVPKEAG-EGGGGXSAEXXEKGAEGGTGFAWVKDYQMNVQNYPAGQGDSGSGSSGAMAHLVFIIDQASSKATFCQLSARVDLANLPAEDQANRGPGMEVARRPPSDEE 1401
            K SEFL  L+FRN LPD P    F++ P   ++L++Y P TLE  + +++H   +LG+ ID+ID   Y                              P+ P  L   D ++L              +E  + ++ R +   +V+WL++T Y+ ND +DAVHKF+S+ ++Q   +E  +  + E            SF + N  K LVH   K      +  V PD  L  N Y  + +DI P E+        +    R D+A++  + K  ++ G+E + GS ++P  A  E     +     K  +    F+++++Y M+V++  +              H VF++D  S++ T+  +  R+ L       +  R  G  V RR  SD E
Sbjct:  119 KQSEFLATLEFRNALPDIPFDTKFVQYPHERERLIKYKPNTLEQDYTYEIHEEANLGLPIDLIDPAKYEGASPIFGFNTAKVWLLTDVIIAATALAIAPENPGPLEIGDEQVLMM------------KEDHAGKVGRSKARPTVSWLRRTEYMGNDLYDAVHKFKSEVEIQSALREGTENALAEVVSITLEDRAEASFRDINDPKLLVHPFQKKKKIAKMWDVFPDQVLSANKYAILSYDILPSEDIKS-----KGIENREDRAVLCGISKKIQA-GNELIQGSILLPNAADDEVWMDTTYRLSSKDHDDREKFSYLREYLMSVESLES--------------HCVFMLDPESNQFTYSDILNRIQLK------KTKRHRGAIVHRREYSDAE 473
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BLAST of jgi.p|Trimin1|349666 vs. uniprot
Match: A0A835YTA0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTA0_9STRA)

HSP 1 Score: 1571 bits (4069), Expect = 0.000e+0
Identity = 821/821 (100.00%), Postives = 821/821 (100.00%), Query Frame = 1 
Query:    1 MARWARQWPSPEAKRQHRVALARARCRTHVARLRANPDLLRSRRERHLAAQKRWLAKQRGGAGGEXXXRSTGGPEPPYPPEQQAGEDGGTGTKEEEFLSVPDEARRPSSPPSVXXXXXXXRVDAGEAGADVPPRGEGDEAAEPAPAEPAAAEGEWWEEERGPSSPPPYLKDGYCPFRGLRASPPCARYYVDDPVYERLRLALERLVPGYELLAASSCSSDLLGLVHQWATCFGGETAGACLDLASAGGRGLPGRTCAARPRVDREAEGLRPKEQVLRLLGEEGRKSGSASFVDAWRSGAVQTAFVEHVRRRLVEDSPKPTILFLETAPVYYDACLTGGTLRALASLCARQGVALVTDEVMLSVRCGRPLSSDYARSFRPDAAVLGSKALGSAFVVVRRLSPLKHAFRSQPMMVGQEISAEAAEAAVRAIDYILREDLMGYIAGEGEARRRAAGASGAGDLWHDAPREVASAFPAYTRGSRVLLPLDYRFPPDGGEGAAEETVADRPPXXXTADEGRATRSRRSPLPSSPLAPLASEHVSADLSESSTRGGLGCGSEYLIDYGRRGLLQKANAPLLRHGRAFTPGWPDMSRPVNARRFSFRVRDTHGRLDAPGFARRALGLKIGNPRRPSEPVSEVRYCEEGEGWAFSVRCHPGSANVRRHLVECLPAPFREGWDLQTEDPNLGTSTDGREVFVERWAGRATVSPELGTEERRVSEAKRYPWTRECAVGGVRQADEGPGAIRQDARSGAASLREGRRLQSRDARANISPARARAAPTAETSGPAASAVASVTVPALAPAPAAEGNRRDLEEAESDDDDQDYI 2463
            MARWARQWPSPEAKRQHRVALARARCRTHVARLRANPDLLRSRRERHLAAQKRWLAKQRGGAGGEXXXRSTGGPEPPYPPEQQAGEDGGTGTKEEEFLSVPDEARRPSSPPSVXXXXXXXRVDAGEAGADVPPRGEGDEAAEPAPAEPAAAEGEWWEEERGPSSPPPYLKDGYCPFRGLRASPPCARYYVDDPVYERLRLALERLVPGYELLAASSCSSDLLGLVHQWATCFGGETAGACLDLASAGGRGLPGRTCAARPRVDREAEGLRPKEQVLRLLGEEGRKSGSASFVDAWRSGAVQTAFVEHVRRRLVEDSPKPTILFLETAPVYYDACLTGGTLRALASLCARQGVALVTDEVMLSVRCGRPLSSDYARSFRPDAAVLGSKALGSAFVVVRRLSPLKHAFRSQPMMVGQEISAEAAEAAVRAIDYILREDLMGYIAGEGEARRRAAGASGAGDLWHDAPREVASAFPAYTRGSRVLLPLDYRFPPDGGEGAAEETVADRPPXXXTADEGRATRSRRSPLPSSPLAPLASEHVSADLSESSTRGGLGCGSEYLIDYGRRGLLQKANAPLLRHGRAFTPGWPDMSRPVNARRFSFRVRDTHGRLDAPGFARRALGLKIGNPRRPSEPVSEVRYCEEGEGWAFSVRCHPGSANVRRHLVECLPAPFREGWDLQTEDPNLGTSTDGREVFVERWAGRATVSPELGTEERRVSEAKRYPWTRECAVGGVRQADEGPGAIRQDARSGAASLREGRRLQSRDARANISPARARAAPTAETSGPAASAVASVTVPALAPAPAAEGNRRDLEEAESDDDDQDYI
Sbjct:    1 MARWARQWPSPEAKRQHRVALARARCRTHVARLRANPDLLRSRRERHLAAQKRWLAKQRGGAGGEXXXRSTGGPEPPYPPEQQAGEDGGTGTKEEEFLSVPDEARRPSSPPSVXXXXXXXRVDAGEAGADVPPRGEGDEAAEPAPAEPAAAEGEWWEEERGPSSPPPYLKDGYCPFRGLRASPPCARYYVDDPVYERLRLALERLVPGYELLAASSCSSDLLGLVHQWATCFGGETAGACLDLASAGGRGLPGRTCAARPRVDREAEGLRPKEQVLRLLGEEGRKSGSASFVDAWRSGAVQTAFVEHVRRRLVEDSPKPTILFLETAPVYYDACLTGGTLRALASLCARQGVALVTDEVMLSVRCGRPLSSDYARSFRPDAAVLGSKALGSAFVVVRRLSPLKHAFRSQPMMVGQEISAEAAEAAVRAIDYILREDLMGYIAGEGEARRRAAGASGAGDLWHDAPREVASAFPAYTRGSRVLLPLDYRFPPDGGEGAAEETVADRPPXXXTADEGRATRSRRSPLPSSPLAPLASEHVSADLSESSTRGGLGCGSEYLIDYGRRGLLQKANAPLLRHGRAFTPGWPDMSRPVNARRFSFRVRDTHGRLDAPGFARRALGLKIGNPRRPSEPVSEVRYCEEGEGWAFSVRCHPGSANVRRHLVECLPAPFREGWDLQTEDPNLGTSTDGREVFVERWAGRATVSPELGTEERRVSEAKRYPWTRECAVGGVRQADEGPGAIRQDARSGAASLREGRRLQSRDARANISPARARAAPTAETSGPAASAVASVTVPALAPAPAAEGNRRDLEEAESDDDDQDYI 821
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BLAST of jgi.p|Trimin1|349666 vs. uniprot
Match: A0A835Z2G4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2G4_9STRA)

HSP 1 Score: 758 bits (1958), Expect = 1.810e-264
Identity = 424/555 (76.40%), Postives = 438/555 (78.92%), Query Frame = 1 
Query:    1 MARWARQWPSPEAKRQHRVALARARCRTHVARLRANPDLLRSRRERHLAAQKRWLAKQRGGAGGEXXXRSTGGPEPPYPPEQQAGEDGGTGTKEEEFLSVPDEARRPSSPPSVXXXXXXXRVDAGEAGADVPPRGE----------------------GDEAAEPAPAEPAAAEGEWWEEERGPSSPPPYLKDGYCPFRGLRASPPCARYYVDDPVYERLRLALERLVPGYELLAASSCSSDLLGLVHQWATCFGGETAGACLDLASAGGRGLPGRTCAARPRVDREAEGLRPKEQVLRLLGEEGRKSGS--ASFVDAWRSGAVQTAFVEHVRRRLVEDSPKPTILFLETAPVYYDACLTGGTLRALASLCARQGVALVTDEVMLSVRCGRPLSSDYARSFRPDAAVLGSKALGSAFVVVRRLSPLKHAFRSQPMMVGQEISAEAAEAAVRAIDYILREDLMGYIAGEGEARRRAAGASGAGDLWHDAPREVASAFPAYTRGSRVLLPLDYRFPPDGGEGAAEETVADRPPXXXTADEGRATRSRRSPLPSSPLA 1593
            MARWARQWPS  AKR HR ALARAR R H ARLRANPDLL+ RRE H  AQ+R LA+QR         RS GGPEPP P EQ+AGE+       +    VPD  ++P SPP+V       RV     G DV                           GD  AEPA   PAAA  E WE+ERGPSSPPPYLKDGYCPFRGLRASPPCARYYVDDPVYERLRLALERLVPGYELLAASSCSSDLLGLVHQWATCFGGETAG CLDLASAGGRGLPGRTCAARPRVDREAEGLRPKEQVLRLLG EGRK G   ASFVDAWRSGAVQTAFVEHVRRRL EDSPKPTIL LETAPVYYDACLTGGTLRALASLCARQGVALVTDEVMLSVRCGRPLSSDYARSFRPDAAVLGSKALGSAFVVVRR SPLKHAFRSQPMMVGQEISA AAEAAVRAIDYILREDLM YIAGEGEARRRAAGASGAG LWHDAPRE ASAFPAY RG+RVLLPLDYRFPP+GGEGA    VADR P    A E RATRS    L ++P A
Sbjct:    1 MARWARQWPSESAKRHHRAALARARNRVHAARLRANPDLLKRRRELHREAQRRCLARQRELLRAGSGNRSDGGPEPPTPREQRAGEEERAEATADGIPPVPDGVQQPPSPPAVPEPARPERVV--REGDDVAAXXXXXXXXXXXXXXXXXXXXXXXXXGD--AEPADG-PAAAAAERWEDERGPSSPPPYLKDGYCPFRGLRASPPCARYYVDDPVYERLRLALERLVPGYELLAASSCSSDLLGLVHQWATCFGGETAGVCLDLASAGGRGLPGRTCAARPRVDREAEGLRPKEQVLRLLGGEGRKGGCGPASFVDAWRSGAVQTAFVEHVRRRLAEDSPKPTILLLETAPVYYDACLTGGTLRALASLCARQGVALVTDEVMLSVRCGRPLSSDYARSFRPDAAVLGSKALGSAFVVVRRQSPLKHAFRSQPMMVGQEISAAAAEAAVRAIDYILREDLMAYIAGEGEARRRAAGASGAGYLWHDAPREAASAFPAYARGTRVLLPLDYRFPPEGGEGAVPPFVADRSPPAPAAGERRATRSGSRSLVATPPA 550
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BLAST of jgi.p|Trimin1|349666 vs. uniprot
Match: A0A835YTZ9_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTZ9_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.530e-5
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 2 
Query: 2177 LSAAYDRQTRDLERSARMHEAVLHRYERDDVCRAAMRA 2290
            +SAAYD QTRD ERSA  +EA L RYER DVCRAAMRA
Sbjct:   40 ISAAYDTQTRDAERSAMAYEAKLRRYERVDVCRAAMRA 77
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349666 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRH5_9STRA0.000e+0100.00Paf1-domain-containing protein n=1 Tax=Tribonema m... [more]
D7FXY8_ECTSI7.620e-10542.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2D5H7_9STRA5.660e-3633.13Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3YBK4_HETAK9.060e-3357.27Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A3R7J8I8_9STRA1.240e-3229.40Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A5D6XM87_9STRA4.690e-3230.99Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3W793_GLOUD2.320e-3129.58Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A1V9ZA09_9STRA7.170e-3128.43RNA polymerase II-associated factor 1 n=1 Tax=Achl... [more]
A0A7S3YEK7_HETAK1.460e-2433.76Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A662XQX2_9STRA7.830e-2326.21Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]

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BLAST of jgi.p|Trimin1|349666 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YTA0_9STRA0.000e+0100.00Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835Z2G4_9STRA1.810e-26476.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YTZ9_9STRA1.530e-576.32Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_47contigContig_47:46974..50378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349666|estExt_Genemark1.C_Ctg_470007
BRITEko00000,ko00001,ko01000,ko03021,ko03036
KEGG rclassRC00080,RC00216,RC00242,RC00255
KEGG ReactionR00245,R00707,R00708,R04444,R04445,R05051
KEGG Pathwayko00250,ko00330,ko01100,ko04011,map00250,map00330,map01100,map04011
KEGG koko:K00294,ko:K11673,ko:K15174
EC1.2.1.88
GOsGO:0000018,GO:0000082,GO:0000083,GO:0000122,GO:0000183,GO:0000278,GO:0000414,GO:0000416,GO:0000428,GO:0000785,GO:0000981,GO:0000983,GO:0000988,GO:0000989,GO:0000993,GO:0001015,GO:0001076,GO:0001098,GO:0001099,GO:0001704,GO:0001706,GO:0001711,GO:0001932,GO:0001934,GO:0002237,GO:0002682,GO:0002683,GO:0003674,GO:0003682,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006289,GO:0006323,GO:0006325,GO:0006333,GO:0006342,GO:0006351,GO:0006353,GO:0006354,GO:0006355,GO:0006356,GO:0006357,GO:0006360,GO:0006362,GO:0006364,GO:0006366,GO:0006368,GO:0006378,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006513,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007369,GO:0007492,GO:0007507,GO:0008023,GO:0008104,GO:0008150,GO:0008152,GO:0008213,GO:0009058,GO:0009059,GO:0009302,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009790,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009909,GO:0009910,GO:0009987,GO:0010033,GO:0010390,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016571,GO:0016574,GO:0016584,GO:0016591,GO:0016593,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019899,GO:0022402,GO:0022607,GO:0022613,GO:0030054,GO:0030154,GO:0030880,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031123,GO:0031124,GO:0031126,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031396,GO:0031399,GO:0031401,GO:0031440,GO:0031442,GO:0031497,GO:0031935,GO:0031938,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032270,GO:0032446,GO:0032496,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033182,GO:0033365,GO:0033523,GO:0033554,GO:0033993,GO:0034243,GO:0034470,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0034728,GO:0035327,GO:0035987,GO:0036211,GO:0040029,GO:0042221,GO:0042254,GO:0042325,GO:0042327,GO:0043144,GO:0043170,GO:0043175,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043628,GO:0043631,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0044877,GO:0045165,GO:0045309,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045787,GO:0045814,GO:0045892,GO:0045893,GO:0045910,GO:0045934,GO:0045935,GO:0045937,GO:0045943,GO:0045944,GO:0046483,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048581,GO:0048583,GO:0048598,GO:0048646,GO:0048731,GO:0048831,GO:0048856,GO:0048869,GO:0050684,GO:0050685,GO:0050789,GO:0050793,GO:0050794,GO:0050815,GO:0050896,GO:0051052,GO:0051053,GO:0051093,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051219,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051569,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0055029,GO:0060255,GO:0060795,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070063,GO:0070647,GO:0070727,GO:0070887,GO:0070911,GO:0071103,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071396,GO:0071704,GO:0071824,GO:0071840,GO:0072359,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090262,GO:0090304,GO:0097659,GO:0098727,GO:0098781,GO:0099122,GO:0140110,GO:1901360,GO:1901362,GO:1901407,GO:1901409,GO:1901564,GO:1901576,GO:1901700,GO:1901701,GO:1901987,GO:1901989,GO:1902275,GO:1902494,GO:1902679,GO:1902680,GO:1902806,GO:1902808,GO:1903047,GO:1903311,GO:1903313,GO:1903320,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1903707,GO:1905269,GO:1990234,GO:1990269,GO:2000026,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2000819,GO:2001020,GO:2001141,GO:2001163,GO:2001165,GO:2001166,GO:2001173,GO:2001207,GO:2001209,GO:2001252,GO:2001253,GO:2001255
Preferred namePAF1
Descriptiontranscription elongation from RNA polymerase II promoter
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2478@1|root,KOG2478@2759|Eukaryota
Evalue6.65e-106
Seed ortholog2880.D7FXY8
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA polymerase II-associated, Paf1
Ec32 orthologEc-19_002080.1
TranscriptId349988
TrackFilteredModels1
ProteinId349666
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349666gene_6176Tribonema minus UTEX_B_3156 geneContig_47 46974..50378 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349666Trimin1|349666|estExt_Genemark1.C_Ctg_470007Tribonema minus UTEX_B_3156 polypeptideContig_47 46974..50242 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6176_1exon_6176_1Tribonema minus UTEX_B_3156 exonContig_47 46974..47072 +
exon_6176_2exon_6176_2Tribonema minus UTEX_B_3156 exonContig_47 47327..47959 +
exon_6176_3exon_6176_3Tribonema minus UTEX_B_3156 exonContig_47 48470..48922 +
exon_6176_4exon_6176_4Tribonema minus UTEX_B_3156 exonContig_47 49709..50378 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6176CDS_6176Tribonema minus UTEX_B_3156 CDSContig_47 46974..47072 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6176UTR3_6176Tribonema minus UTEX_B_3156 three_prime_UTRContig_47 50243..50378 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6176 ID=mRNA_6176|Name=jgi.p|Trimin1|349666|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1855bp|location=Sequence derived from alignment at Contig_47:46974..50378+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGACCTTGCAGCCTATGGAGACTGACATGGCGTCGCAGCTGCAGCC
ACCGCCGCCTCCGCCGCTTCCAGTGCCACCGGCTGCCACATCACAGCAGG
CAGCGGCATCAGCAGGCGCTGGCGCCGATGGCGTGCCTCCGGACAGCTCG
CGGCATAGGGAGGAGAGCAGCAAGGAAAAAGAGGACAGGCGGCGCAAGGA
CAAGGAGCGGGTGCAGAAGGAGCGAGCTGAGAAAGAGAAGATCAGGAAGG
AGCACGCCAGAAAGGTGCTGGAGCAGCAGAAGATACAGACCGCGCGGCGC
AAGTGGCAGAAGGACAGCGAGTTCCTCTGCCACCTCAAGTTCAGGAACAA
CCTGCCGGACCCCCCGCTGGGCCCCCACTTCCTCAAGATCCCCCTGTCGA
TGGACAAGCTGGTGCAGTACACCCCCACCACGCTGGAGACGCAGCACAAG
TGGAAGCTGCACTGCAACAGGGACCTGGGTGTGGACATCGACATCATTGA
CTCGCGCAGCTACTCTGTGCCGGACAAGCCCCCAACACTCCATCCCAAGG
ATGCAGAGCTGCTGCAGTGGGACAAGGTGGAGCGCGGCAACGGCGCTGCC
GAGGCGGAGGAGGGGTTCAGCCGCCGCATGCAGCGCAAGCAGGTCGACAC
GAGCGTGACGTGGCTCAAGAAGACCGTCTACCTCACCAACGACCCATTCG
ACGCCGTGCACAAGTTCCGCTCCGACCGCCAGGTGCAAATGGACGCGAAG
GAGCGCATGCAGAAGGACATGGAGGAGTCGCGCAAGACGGACCGCGTCAG
TGCCGTACTCCAGTCCTTTGCGGAGGCCAACTCCAAGAAGAAGCTCGTGC
ACGCCACCAACAAGTCGCTCACGCCTGAGTGGGTCATGCCCGTGCTGCCC
GACGCGGCGCTGTGGGGCAACACGTACACGCACGTGGTCTTTGACATCGA
TCCCATTGAGGAGGAGCACCTCATTGCGGGGCCGCGGCAGCGCAAGCGAC
AGCGCGCGGACAAGGCCATCGTGGGCAACGTGCGCAAGCTGCGCAAGAGC
GACGGCGACGAGTTCGTTACGGGCAGTTACATGGTGCCCAAGGAGGCGGG
GGAGGGGGGCGGCGGCGGGAGCGCAGAGGGGGGGGAGAAGGGGGCCGAGG
GGGGTACGGGGTTTGCCTGGGTCAAGGACTATCAGATGAACGTCCAGAAC
TACCCCGCGGGGCAGGGCGACTCTGGCAGCGGCAGCAGCGGCGCCATGGC
CCACCTGGTCTTCATCATAGACCAGGCCAGCAGCAAGGCCACCTTCTGCC
AGCTCTCCGCGCGCGTCGATCTCGCCAATCTGCCTGCAGAGGACCAGGCC
AACAGGGGCCCCGGCATGGAGGTAGCGCGACGGCCCCCCTCTGATGAGGA
GTTCCAGGCCATGGGGGAAAAGGTGGCCAAAGATCTGGGGGTGCTGGCGG
CGAAGCACATGCGGCGCGCGGCGGCGGACGCGGCAGCGGTTTCGTCTAGG
GGGGCGGGGGAGGGGGTGCGCGGGGGGCGGGGGTATGGGCACGGGGGGGC
GGATGGCGCGAGGGGAGGCGGGGGGGGGGACGGCGATGGGGACAGCGTGA
TGACGGAGCATCTGGAGAGCGAAGGGAGCAATGTTGCGGTGAAGGGCACG
GATACGAGCGAGGGGGATGAGATGAGTAGGGTGGGGATGGACGACAGCGA
CGAGGATGGCCTTAACTAGGGTTAGGGTTTGGGTAGTACGTGGCGTGCGT
GCTTGCGGGGGTGTTTTGTAGACAGTGAGAGAGAGCACACAGACGATGCG
GGTCACGAGCTTGCTTGGTGGCCGTACCAGTGTTAATACACCAGTGAGGA
ATATG
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protein sequence of jgi.p|Trimin1|349666

>Trimin1|349666|estExt_Genemark1.C_Ctg_470007 ID=Trimin1|349666|estExt_Genemark1.C_Ctg_470007|Name=jgi.p|Trimin1|349666|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=573bp
MATLQPMETDMASQLQPPPPPPLPVPPAATSQQAAASAGAGADGVPPDSS
RHREESSKEKEDRRRKDKERVQKERAEKEKIRKEHARKVLEQQKIQTARR
KWQKDSEFLCHLKFRNNLPDPPLGPHFLKIPLSMDKLVQYTPTTLETQHK
WKLHCNRDLGVDIDIIDSRSYSVPDKPPTLHPKDAELLQWDKVERGNGAA
EAEEGFSRRMQRKQVDTSVTWLKKTVYLTNDPFDAVHKFRSDRQVQMDAK
ERMQKDMEESRKTDRVSAVLQSFAEANSKKKLVHATNKSLTPEWVMPVLP
DAALWGNTYTHVVFDIDPIEEEHLIAGPRQRKRQRADKAIVGNVRKLRKS
DGDEFVTGSYMVPKEAGEGGGGGSAEGGEKGAEGGTGFAWVKDYQMNVQN
YPAGQGDSGSGSSGAMAHLVFIIDQASSKATFCQLSARVDLANLPAEDQA
NRGPGMEVARRPPSDEEFQAMGEKVAKDLGVLAAKHMRRAAADAAAVSSR
GAGEGVRGGRGYGHGGADGARGGGGGDGDGDSVMTEHLESEGSNVAVKGT
DTSEGDEMSRVGMDDSDEDGLN*
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mRNA from alignment at Contig_47:46974..50378+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6176 ID=mRNA_6176|Name=jgi.p|Trimin1|349666|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3405bp|location=Sequence derived from alignment at Contig_47:46974..50378+ (Tribonema minus UTEX_B_3156 )
ATGGCGACCTTGCAGCCTATGGAGACTGACATGGCGTCGCAGCTGCAGCC
ACCGCCGCCTCCGCCGCTTCCAGTGCCACCGGCTGCCACATCACAGCAGG
TATGTCTGCCATAGTGTCTCTTGATCTGCAGCAGGGAAAAATCAAACACG
CAGCACTTGCGAGGCGAGGCGCCATACAGTTAGATAGGTGACAGTTTGTC
TTTTCAAGTAGCCGGAAACTAGTATTCTGCTGGATCCTCCAGTCCTGTGC
AGTGCAAGATCGTCTGAAACTCACGATTTGTCTCAACAAAGCAACCATCG
TTGACGTGCACTTACAGGCAGCGCGGCCAGCAGGCGGCGCACCGGCCCCG
CAGGCAGCGGCATCAGCAGGCGCTGGCGCCGATGGCGTGCCTCCGGACAG
CTCGCGGCATAGGGAGGAGAGCAGCAAGGAAAAAGAGGACAGGCGGCGCA
AGGACAAGGAGCGGGTGCAGAAGGAGCGAGCTGAGAAAGAGAAGATCAGG
AAGGAGCACGCCAGAAAGGTGCTGGAGCAGCAGAAGATACAGACCGCGCG
GCGCAAGTGGCAGAAGGACAGCGAGTTCCTCTGCCACCTCAAGTTCAGGA
ACAACCTGCCGGACCCCCCGCTGGGCCCCCACTTCCTCAAGATCCCCCTG
TCGATGGACAAGCTGGTGCAGTACACCCCCACCACGCTGGAGACGCAGCA
CAAGTGGAAGCTGCACTGCAACAGGGACCTGGGTGTGGACATCGACATCA
TTGACTCGCGCAGCTACTCTGTGCCGGACAAGCCCCCAACACTCCATCCC
AAGGATGCAGAGCTGCTGCAGTGGGACAAGGTGGAGCGCGGCAACGGCGC
TGCCGAGGCGGAGGAGGGGTTCAGCCGCCGCATGCAGCGCAAGCAGGTCG
ACACGAGCGTGACGTGGCTCAAGAAGACCGTCTACCTCACCAACGACCCA
TTCGACGCCGTGCACAAGTTCCGCTCCGACCGCCAGGTGAGGCTACATCA
ATGCGCAACAGTGCTCAGGGCTGCTGATATATAGACACTGCATGTTTGTC
AGGACCTGTCGGGCTTAAGATTCAGTGGTCGATAGTCATGTGCGGTGTGG
TGAGTACAGCAGGTACAGCAGGCGCAGCAGTGCATCGGAAGCCCGCATGT
AATGGATGTGCACTGTCACATGCTACTATCATCATCAGCATACATGAGAG
GTGGATATGCACCGTAAGCGAGGCGCTGAGCCCCCTTTTCCTGGTGGAAA
GTTGATAGTTTTGTTGAAATTGCATTCAAATATGCCTTCTGCAGGCGCAC
CTGTGGAGCACGGATGAACCCCGCAGCGCCCTCGCCTCGCCTCAATTGGC
TGGCAAACACACGACAACATGTGTTCACATACTATGGCCAAGCATGGCGC
TGTCTCAAAGCTGCCCACCGCCCTGCTGACCCTCTCCTGTGCCATCTCAA
TGCCCCCCTTCCCTCCCCCTCCCCATACACCACACGGCCGCCGCAGGTGC
AAATGGACGCGAAGGAGCGCATGCAGAAGGACATGGAGGAGTCGCGCAAG
ACGGACCGCGTCAGTGCCGTACTCCAGTCCTTTGCGGAGGCCAACTCCAA
GAAGAAGCTCGTGCACGCCACCAACAAGTCGCTCACGCCTGAGTGGGTCA
TGCCCGTGCTGCCCGACGCGGCGCTGTGGGGCAACACGTACACGCACGTG
GTCTTTGACATCGATCCCATTGAGGAGGAGCACCTCATTGCGGGGCCGCG
GCAGCGCAAGCGACAGCGCGCGGACAAGGCCATCGTGGGCAACGTGCGCA
AGCTGCGCAAGAGCGACGGCGACGAGTTCGTTACGGGCAGTTACATGGTG
CCCAAGGAGGCGGGGGAGGGGGGCGGCGGCGGGAGCGCAGAGGGGGGGGA
GAAGGGGGCCGAGGGGGGTACGGGGTTTGCCTGGGTCAAGGACTATCAGG
TACGGTTCACGTATATAAAACAAGCATATGGACTACATCTGCAGGCCCTC
AGCAGATTGAAGTTTAAGTTGTGCAAAGTAAGGCCCTGTGCCTGAATGTG
CTCGTCGGCAGTATTCGATGAGCCGAACTGCATATGGGGGGAGGGCTCCT
AGCATGATTATCATGGATATTTCATCAATGCCTCTCGTGGCCTCTCCAGA
GTATTCAGCTGCTACAAGCTGCGGCACTGTGAGCGCTGACTGCTTTAGCT
ATGTGCACCAGCAGAGCTTTCGTCTTCACGTCACTTGCCGTCAGCCTTGC
ATAGGTACAGATTGTATATCTCGCATTGCATCTACTGCCATGGAGCCGTT
GGGATGTGTCTTGTGCGGTGCACCGCTTAGGGAAGAACCAACGTTGATTG
GGGCAGTTACAATGTAACTGTTGTCGTTGGCAGCACAGCAGCAGCACACC
ACTGTGTTGGATAGCTGTGGCTGTAATGGGCTCTGTTGCTGTAGTGAGTT
GAGTGTCAGCACCCAGCCATGTGCATCTGCTGGGTTGAGACAGGGAGGCC
TCAGCTGGCAGCAGCAACAGGCGGATTAGCACCAGCTGTCATCTTTGGTG
CCCTCCACACAAATGTCAATGCCAGATGTCAATGCCATGTCAGCGAGCTC
CGCTGCGCAGGGTGCATAGGCCTTGGCGGTACTGTACATCACCCCATGCG
CCAGCTGGTTTGCGTGGAGTACCGCAGGCGATCACTCACACCCTCCCCCC
CCTACCCCCACCCCCACTCCCACCCCCCCTTACAGATGAACGTCCAGAAC
TACCCCGCGGGGCAGGGCGACTCTGGCAGCGGCAGCAGCGGCGCCATGGC
CCACCTGGTCTTCATCATAGACCAGGCCAGCAGCAAGGCCACCTTCTGCC
AGCTCTCCGCGCGCGTCGATCTCGCCAATCTGCCTGCAGAGGACCAGGCC
AACAGGGGCCCCGGCATGGAGGTAGCGCGACGGCCCCCCTCTGATGAGGA
GTTCCAGGCCATGGGGGAAAAGGTGGCCAAAGATCTGGGGGTGCTGGCGG
CGAAGCACATGCGGCGCGCGGCGGCGGACGCGGCAGCGGTTTCGTCTAGG
GGGGCGGGGGAGGGGGTGCGCGGGGGGCGGGGGTATGGGCACGGGGGGGC
GGATGGCGCGAGGGGAGGCGGGGGGGGGGACGGCGATGGGGACAGCGTGA
TGACGGAGCATCTGGAGAGCGAAGGGAGCAATGTTGCGGTGAAGGGCACG
GATACGAGCGAGGGGGATGAGATGAGTAGGGTGGGGATGGACGACAGCGA
CGAGGATGGCCTTAACTAGGGTTAGGGTTTGGGTAGTACGTGGCGTGCGT
GCTTGCGGGGGTGTTTTGTAGACAGTGAGAGAGAGCACACAGACGATGCG
GGTCACGAGCTTGCTTGGTGGCCGTACCAGTGTTAATACACCAGTGAGGA
ATATG
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Coding sequence (CDS) from alignment at Contig_47:46974..50378+

>mRNA_6176 ID=mRNA_6176|Name=jgi.p|Trimin1|349666|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1719bp|location=Sequence derived from alignment at Contig_47:46974..50378+ (Tribonema minus UTEX_B_3156 )
ATGGCGACCTTGCAGCCTATGGAGACTGACATGGCGTCGCAGCTGCAGCC
ACCGCCGCCTCCGCCGCTTCCAGTGCCACCGGCTGCCACATCACAGCAGG
CAGCGGCATCAGCAGGCGCTGGCGCCGATGGCGTGCCTCCGGACAGCTCG
CGGCATAGGGAGGAGAGCAGCAAGGAAAAAGAGGACAGGCGGCGCAAGGA
CAAGGAGCGGGTGCAGAAGGAGCGAGCTGAGAAAGAGAAGATCAGGAAGG
AGCACGCCAGAAAGGTGCTGGAGCAGCAGAAGATACAGACCGCGCGGCGC
AAGTGGCAGAAGGACAGCGAGTTCCTCTGCCACCTCAAGTTCAGGAACAA
CCTGCCGGACCCCCCGCTGGGCCCCCACTTCCTCAAGATCCCCCTGTCGA
TGGACAAGCTGGTGCAGTACACCCCCACCACGCTGGAGACGCAGCACAAG
TGGAAGCTGCACTGCAACAGGGACCTGGGTGTGGACATCGACATCATTGA
CTCGCGCAGCTACTCTGTGCCGGACAAGCCCCCAACACTCCATCCCAAGG
ATGCAGAGCTGCTGCAGTGGGACAAGGTGGAGCGCGGCAACGGCGCTGCC
GAGGCGGAGGAGGGGTTCAGCCGCCGCATGCAGCGCAAGCAGGTCGACAC
GAGCGTGACGTGGCTCAAGAAGACCGTCTACCTCACCAACGACCCATTCG
ACGCCGTGCACAAGTTCCGCTCCGACCGCCAGGTGCAAATGGACGCGAAG
GAGCGCATGCAGAAGGACATGGAGGAGTCGCGCAAGACGGACCGCGTCAG
TGCCGTACTCCAGTCCTTTGCGGAGGCCAACTCCAAGAAGAAGCTCGTGC
ACGCCACCAACAAGTCGCTCACGCCTGAGTGGGTCATGCCCGTGCTGCCC
GACGCGGCGCTGTGGGGCAACACGTACACGCACGTGGTCTTTGACATCGA
TCCCATTGAGGAGGAGCACCTCATTGCGGGGCCGCGGCAGCGCAAGCGAC
AGCGCGCGGACAAGGCCATCGTGGGCAACGTGCGCAAGCTGCGCAAGAGC
GACGGCGACGAGTTCGTTACGGGCAGTTACATGGTGCCCAAGGAGGCGGG
GGAGGGGGGCGGCGGCGGGAGCGCAGAGGGGGGGGAGAAGGGGGCCGAGG
GGGGTACGGGGTTTGCCTGGGTCAAGGACTATCAGATGAACGTCCAGAAC
TACCCCGCGGGGCAGGGCGACTCTGGCAGCGGCAGCAGCGGCGCCATGGC
CCACCTGGTCTTCATCATAGACCAGGCCAGCAGCAAGGCCACCTTCTGCC
AGCTCTCCGCGCGCGTCGATCTCGCCAATCTGCCTGCAGAGGACCAGGCC
AACAGGGGCCCCGGCATGGAGGTAGCGCGACGGCCCCCCTCTGATGAGGA
GTTCCAGGCCATGGGGGAAAAGGTGGCCAAAGATCTGGGGGTGCTGGCGG
CGAAGCACATGCGGCGCGCGGCGGCGGACGCGGCAGCGGTTTCGTCTAGG
GGGGCGGGGGAGGGGGTGCGCGGGGGGCGGGGGTATGGGCACGGGGGGGC
GGATGGCGCGAGGGGAGGCGGGGGGGGGGACGGCGATGGGGACAGCGTGA
TGACGGAGCATCTGGAGAGCGAAGGGAGCAATGTTGCGGTGAAGGGCACG
GATACGAGCGAGGGGGATGAGATGAGTAGGGTGGGGATGGACGACAGCGA
CGAGGATGGCCTTAACTAG
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