mRNA_6166 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|166628
Unique Name	mRNA_6166
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|166628 vs. uniprot
Match: A0A836CCC1_9STRA (MINDY_DUB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCC1_9STRA)

HSP 1 Score: 665 bits (1716), Expect = 1.130e-241
Identity = 328/328 (100.00%), Postives = 328/328 (100.00%), Query Frame = 1

Query:    1 MSIQGGNYRLKRIEFDGARRPVLCQNEGGPCPLLAILNVLLLRGSVQLHPDYSEVGLHQLVQLLAGHLLELSARHSEPAQAVNFQQQLHGVMELLPRLQYGLDVNVKFLDPQGFEFTKELSTFDLTEVTLFHGWLIDPQDAHMMEAVGSLSYNQLVEILVEYRAALHDLETDPHKAPLASVAERQERARVERLEQLLSRGAAIDHFLADTATQLTYHGLARLHAEVPEGSLCVFFRNNHFSTMHKHHGKLYLLVTDYGYANQPTAVWEKLDAIDGDTVLVNAFFEERNRPRSPPAPSEEGGADPDHLLALQLQQVGTDTRRCCNHVCA 984
            MSIQGGNYRLKRIEFDGARRPVLCQNEGGPCPLLAILNVLLLRGSVQLHPDYSEVGLHQLVQLLAGHLLELSARHSEPAQAVNFQQQLHGVMELLPRLQYGLDVNVKFLDPQGFEFTKELSTFDLTEVTLFHGWLIDPQDAHMMEAVGSLSYNQLVEILVEYRAALHDLETDPHKAPLASVAERQERARVERLEQLLSRGAAIDHFLADTATQLTYHGLARLHAEVPEGSLCVFFRNNHFSTMHKHHGKLYLLVTDYGYANQPTAVWEKLDAIDGDTVLVNAFFEERNRPRSPPAPSEEGGADPDHLLALQLQQVGTDTRRCCNHVCA
Sbjct:    1 MSIQGGNYRLKRIEFDGARRPVLCQNEGGPCPLLAILNVLLLRGSVQLHPDYSEVGLHQLVQLLAGHLLELSARHSEPAQAVNFQQQLHGVMELLPRLQYGLDVNVKFLDPQGFEFTKELSTFDLTEVTLFHGWLIDPQDAHMMEAVGSLSYNQLVEILVEYRAALHDLETDPHKAPLASVAERQERARVERLEQLLSRGAAIDHFLADTATQLTYHGLARLHAEVPEGSLCVFFRNNHFSTMHKHHGKLYLLVTDYGYANQPTAVWEKLDAIDGDTVLVNAFFEERNRPRSPPAPSEEGGADPDHLLALQLQQVGTDTRRCCNHVCA 328

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BLAST of jgi.p|Trimin1|166628 vs. uniprot
Match: D7FYU5_ECTSI (MINDY_DUB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYU5_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 3.180e-78
Identity = 157/424 (37.03%), Postives = 215/424 (50.71%), Query Frame = 1

Query:   22 YRLKRIEFDGARRPVLCQNEGGPCPLLAILNVLLLRGSVQLHPDYSEVGLHQLVQLLAGHLLELSARHSEPAQAVNFQQQLHGVMELLPRLQYGLDVNVKFLDPQGFEFTKELSTFDLTEVTLFHGWLIDPQDAHMMEAVGSLSYNQLVEILVEYR--------------------------------------------------------------------AALHDLETDP--HKAPL----------------ASVAERQE-------------------------RARVERLEQLLSRGAAIDHFLADTATQLTYHGLARLHAEVPEGSLCVFFRNNHFSTMHKHHGKLYLLVTDYGYANQPTAVWEKLDAIDGDTVLVNAFFEERNRPRSPPAPSEEGGADPDHLLALQLQQVGTDTR 960
            YR+KR+ F G + P+LCQN  GPCPLLAI N+LLL+ ++ +HPD SE+   +L QL+AG LL+ +  H +    VN Q QL  V++LLPRLQYGLDVNV+F   +GFEFT+E++ FD++ VTL HGW++DP+D H    +  +SYN+LVE L+E+R                                                                    A + D  ++P    AP                 AS   RQ+                             +++   L+ G   + F  +TA+QLTY+GL++LH EV E  LCVFFRNNHFSTM K+ GKLYLL+TD GYA + + VWEKLD IDG+T   ++ F   +R       S +  +D D++LAL LQQ GT  R
Sbjct:    7 YRIKRVRFFGRKVPILCQNLNGPCPLLAIGNILLLQSNISIHPDLSEISFSELTQLVAGFLLDSNPPHEDERINVNQQTQLDTVIKLLPRLQYGLDVNVRFNSVRGFEFTEEMAAFDMSGVTLLHGWILDPEDKHTGSVIEGMSYNKLVEKLLEFRSLTVEASGPRKQDFDNVGARQNVPSDKSESNDHQEAGSTNFAKTAGEEDAGTQAQLVTKPLQTAQSVGAVVVDDASEPLGENAPTPVRRSEEDTGQEGLSSASTITRQQGSESILHREEGLPTDKCARASSVTSETESDKMATALNEGQVAEEFFRETASQLTYYGLSQLHQEVRERQLCVFFRNNHFSTMFKYEGKLYLLITDLGYARESSVVWEKLDQIDGNTEYADSDFGPSSRCS---LASGDPQSDADYMLALALQQEGTSGR 427

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BLAST of jgi.p|Trimin1|166628 vs. uniprot
Match: A0A8B8DY94_CRAVI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8DY94_CRAVI)

HSP 1 Score: 245 bits (625), Expect = 1.940e-73
Identity = 132/315 (41.90%), Postives = 187/315 (59.37%), Query Frame = 1

Query:   22 YRLKRIEFDGARRPVLCQNEGGPCPLLAILNVLLLRGSVQLHPDYSEVGLHQLVQLLAGHLLELSARHSEPAQAVNFQQQLHGVMELLPRLQYGLDVNVKFLDPQGFEFTKELSTFDLTEVTLFHGWLIDPQDAHMMEAVGSLSYNQLVEILVEYRAALHDLETDPHKAPLASVAERQERARVERLEQLLSRGAAIDHFLADTATQLTYHGLARLHAEVPEGSLCVFFRNNHFSTMHKHHGKLYLLVTDYGYANQPTAVWEKLDAIDGDTVLVNAFFEERNRPRS------PP--APSEEGGADPDHLLALQLQQ 942
            Y +K   FD    PV+ QNE GPCPLLAI+N+LLL+G V+L P    +   Q++  L   +LE + + +  A+ +NF+Q +H  M ++ +LQ GLDVNV+F   Q FE+T E   FDL  + L+HGWL+DPQD+  +EAVG+ SYNQLVE ++  R++                            E+L+++    ++FL  TA+QLTYHGL  L + V E  LCVFFRNNHFST++KH  +L++LVTD G+ N+   +WE L+ ++GD   V+A F    +P S      PP   P  E   D D+LLA+ LQQ
Sbjct:  159 YHIKWNTFDLRDVPVITQNENGPCPLLAIMNILLLKGKVKLEPGLEIITPEQIMTYLGDCILENAPKVNTEAEQLNFEQNMHDAMAVIHKLQTGLDVNVRFTGIQDFEYTPECIIFDLLRIPLYHGWLVDPQDSRTVEAVGNCSYNQLVEKIIGDRSS--------------------------EKEELVNQALLAENFLDRTASQLTYHGLYELQSTVKENQLCVFFRNNHFSTLYKHKNELFVLVTDQGFLNEKNVMWETLNNVEGDGCFVDAQFHTYTKPPSLTEALAPPNVPPGSEEQVDQDYLLAMSLQQ 447

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BLAST of jgi.p|Trimin1|166628 vs. uniprot
Match: A0A6S8AMQ2_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8AMQ2_9STRA)

HSP 1 Score: 246 bits (628), Expect = 1.980e-73
Identity = 134/324 (41.36%), Postives = 198/324 (61.11%), Query Frame = 1

Query:   19 NYRLKRIEFDGARRPVLCQNEGGPCPLLAILNVLLLRGSVQLHPDYSEVGLHQLVQLLAGHLLELSARHSEP-AQAVNFQQQLHGVMELLPRLQYGLDVNVKFLDPQGFEFTKELSTFDLTEVTLFHGWLIDPQDAHMMEAVGSLSYNQLVEILVEYRAALHDLETDPHKAPLASVAERQERARVERLEQLLSRGAAIDHFLADTATQLTYHGLARLHAEVPEGSLCVFFRNNHFSTMHKHHGKLYLLVTDYGYANQPTAVWEKLDAIDGDTVLVNAFFEERNR-----------PRSPPAPSEE----GGADPDHLLALQLQQ 942
            N+R+KR +F   +  +  QNE GPCPLLA+ NVL+LRG++++HPD SE+    L++L+AGHLLE +   +E  A + N Q+ L  ++++LP LQ+GLDVNV+F   + FE+   ++ FD+ +++L+HGW++DP D      +   SYNQ+V+ ++E +    D+++   +  L       E AR++R EQ+L        FL+DTA+QLTY GL  LH+ V E   CVFFRNNHF TM K  G+LYLL+TD GYA Q    WE+L+ IDG+T + +  F + N              +   PS +    G  D D +LA+QLQQ
Sbjct:  193 NHRIKRFKFFNRQISICLQNENGPCPLLALANVLILRGAIKIHPDRSEISSDLLIELIAGHLLETNPPLAEDDAYSKNQQKTLADIIDVLPTLQFGLDVNVQFGGVKNFEYDTRIAVFDMLDISLYHGWIVDPNDEITYSVLYKKSYNQIVDKIIEGQQLEADIKSKKPQTVLG------EPARLKR-EQVLREAFIAQQFLSDTASQLTYVGLTELHSVVKERQTCVFFRNNHFCTMFKFEGQLYLLLTDQGYAQQDAVAWERLNEIDGNTDICSPTFSDPNEYIAQSLDETTDDTAEIVPSSDSPNSGSVDQDRILAMQLQQ 509

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BLAST of jgi.p|Trimin1|166628 vs. uniprot
Match: G3U203_LOXAF (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Loxodonta africana TaxID=9785 RepID=G3U203_LOXAF)

HSP 1 Score: 239 bits (611), Expect = 2.210e-73
Identity = 132/310 (42.58%), Postives = 181/310 (58.39%), Query Frame = 1

Query:   22 YRLKRIEFDGARRPVLCQNEGGPCPLLAILNVLLLRGSVQLHPDYSEVGLHQLVQLLAGHLLELSARHSEPAQAVNFQQQLHGVMELLPRLQYGLDVNVKFLDPQGFEFTKELSTFDLTEVTLFHGWLIDPQDAHMMEAVGSLSYNQLVEILVEYRAALHDLETDPHKAPLASVAERQERARVERLEQLLSRGAAIDHFLADTATQLTYHGLARLHAEVPEGSLCVFFRNNHFSTMHKHHGKLYLLVTDYGYANQPTAVWEKLDAIDGDTVLVNAFFEERNRPRSPPAP---SEEGGADPDHLLALQLQQ 942
            Y +K I++     P++ QNE GPCPLLAILNVLLL   V+L P    +   QL++ L  ++L+   +     Q +N++Q +   M +L +LQ GLDVNVKF   + FE+T E   FDL ++ L+HGWL+DPQ   ++ AVG+ SYNQLVE ++ Y+ + +                           +L+S G   + FL +TATQLTYHGL  L + V EG LCVFFRNNHFSTM K+ G+LYLLVTD G+  +   VWE L  +DGD    ++ F  R RP S P      ++   D D+L+AL LQQ
Sbjct:    6 YHIKWIQWKEENTPIITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAEQLMEYLGDYMLDAKPKEISEIQRLNYEQNMSDAMAVLHKLQTGLDVNVKFTGVRVFEYTPECIVFDLLDIPLYHGWLVDPQIDDIVTAVGNCSYNQLVEKIISYKQSDNS--------------------------ELVSEGFVAEQFLNNTATQLTYHGLCELTSTVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEKVVWESLHNVDGDGNFCDSEF--RLRPPSDPDTVYRGQQDQIDQDYLMALSLQQ 287

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BLAST of jgi.p|Trimin1|166628 vs. uniprot
Match: A0A850XHZ8_PIACA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Piaya cayana TaxID=33601 RepID=A0A850XHZ8_PIACA)

HSP 1 Score: 239 bits (611), Expect = 1.770e-72
Identity = 130/310 (41.94%), Postives = 181/310 (58.39%), Query Frame = 1

Query:   22 YRLKRIEFDGARRPVLCQNEGGPCPLLAILNVLLLRGSVQLHPDYSEVGLHQLVQLLAGHLLELSARHSEPAQAVNFQQQLHGVMELLPRLQYGLDVNVKFLDPQGFEFTKELSTFDLTEVTLFHGWLIDPQDAHMMEAVGSLSYNQLVEILVEYRAALHDLETDPHKAPLASVAERQERARVERLEQLLSRGAAIDHFLADTATQLTYHGLARLHAEVPEGSLCVFFRNNHFSTMHKHHGKLYLLVTDYGYANQPTAVWEKLDAIDGDTVLVNAFFEERNRPRSPPAP---SEEGGADPDHLLALQLQQ 942
            Y +K + +     PV+ QNE GPCPLLAI+NVLLL   ++L P    +   QL++ L  ++L+   +     Q +N++Q +   M +L +LQ GLDVNVKF   + FE+T E   FDL ++ L+HGWL+DPQ A +++AVG+ SYNQLVE ++ Y+ + +                           +L+S G   + FL +TATQLTYHGL  L + V EG LCVFFRNNHFSTM K+ G+LYLLVTD G+  +   VWE L  +DGD    ++ F    RP S P      ++   D D+L+AL LQQ
Sbjct:   57 YHIKWVRWKEENTPVITQNENGPCPLLAIMNVLLLAWKIKLPPMMEIITAEQLMEYLGDYILDAKPKEISEIQRLNYEQNMSDAMAILHKLQTGLDVNVKFTGVRVFEYTPECIVFDLLDIPLYHGWLVDPQVADIVKAVGNCSYNQLVEKIISYKQSDNS--------------------------ELVSEGFVAEQFLNNTATQLTYHGLCELTSAVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEKVVWESLHNVDGDGNFCDSEF--HLRPPSDPETVYRGQQDQIDQDYLMALSLQQ 338

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BLAST of jgi.p|Trimin1|166628 vs. uniprot
Match: G3U2M7_LOXAF (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Afrotheria TaxID=311790 RepID=G3U2M7_LOXAF)

HSP 1 Score: 239 bits (611), Expect = 3.080e-72
Identity = 132/310 (42.58%), Postives = 181/310 (58.39%), Query Frame = 1

Query:   22 YRLKRIEFDGARRPVLCQNEGGPCPLLAILNVLLLRGSVQLHPDYSEVGLHQLVQLLAGHLLELSARHSEPAQAVNFQQQLHGVMELLPRLQYGLDVNVKFLDPQGFEFTKELSTFDLTEVTLFHGWLIDPQDAHMMEAVGSLSYNQLVEILVEYRAALHDLETDPHKAPLASVAERQERARVERLEQLLSRGAAIDHFLADTATQLTYHGLARLHAEVPEGSLCVFFRNNHFSTMHKHHGKLYLLVTDYGYANQPTAVWEKLDAIDGDTVLVNAFFEERNRPRSPPAP---SEEGGADPDHLLALQLQQ 942
            Y +K I++     P++ QNE GPCPLLAILNVLLL   V+L P    +   QL++ L  ++L+   +     Q +N++Q +   M +L +LQ GLDVNVKF   + FE+T E   FDL ++ L+HGWL+DPQ   ++ AVG+ SYNQLVE ++ Y+ + +                           +L+S G   + FL +TATQLTYHGL  L + V EG LCVFFRNNHFSTM K+ G+LYLLVTD G+  +   VWE L  +DGD    ++ F  R RP S P      ++   D D+L+AL LQQ
Sbjct:   77 YHIKWIQWKEENTPIITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAEQLMEYLGDYMLDAKPKEISEIQRLNYEQNMSDAMAVLHKLQTGLDVNVKFTGVRVFEYTPECIVFDLLDIPLYHGWLVDPQIDDIVTAVGNCSYNQLVEKIISYKQSDNS--------------------------ELVSEGFVAEQFLNNTATQLTYHGLCELTSTVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEKVVWESLHNVDGDGNFCDSEF--RLRPPSDPDTVYRGQQDQIDQDYLMALSLQQ 358

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BLAST of jgi.p|Trimin1|166628 vs. uniprot
Match: A0A7L1JUE8_RYNNI (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=5 Tax=Charadriiformes TaxID=8906 RepID=A0A7L1JUE8_RYNNI)

HSP 1 Score: 239 bits (610), Expect = 3.710e-72
Identity = 131/310 (42.26%), Postives = 181/310 (58.39%), Query Frame = 1

Query:   22 YRLKRIEFDGARRPVLCQNEGGPCPLLAILNVLLLRGSVQLHPDYSEVGLHQLVQLLAGHLLELSARHSEPAQAVNFQQQLHGVMELLPRLQYGLDVNVKFLDPQGFEFTKELSTFDLTEVTLFHGWLIDPQDAHMMEAVGSLSYNQLVEILVEYRAALHDLETDPHKAPLASVAERQERARVERLEQLLSRGAAIDHFLADTATQLTYHGLARLHAEVPEGSLCVFFRNNHFSTMHKHHGKLYLLVTDYGYANQPTAVWEKLDAIDGDTVLVNAFFEERNRPRSPPAP---SEEGGADPDHLLALQLQQ 942
            Y +K + +     PV+ QNE GPCPLLAI+NVLLL   ++L P    +   QL++ L  ++L+   +     Q VN++Q +   M +L +LQ GLDVNVKF   + FE+T E   FDL ++ L+HGWL+DPQ A +++AVG+ SYNQLVE ++  + + +                           +L+S G   + FL +TATQLTYHGL  L + V EG LCVFFRNNHFSTM K+ G+LYLLVTD G+  +   VWE L  +DGD    ++ F  R RP S P      ++   D D+L+AL LQQ
Sbjct:   83 YHIKWVRWKEENTPVITQNENGPCPLLAIMNVLLLAWKIKLPPMMEIITAEQLMEYLGDYILDAKPKEISEIQRVNYEQNMSDAMAILHKLQTGLDVNVKFTGVRVFEYTPECIVFDLLDIPLYHGWLVDPQVADIVKAVGNCSYNQLVEKIISCKQSDNS--------------------------ELVSEGFVAEQFLNNTATQLTYHGLCELTSAVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEKVVWESLHNVDGDGNFCDSEF--RLRPPSDPETVYRGQQDQIDQDYLMALSLQQ 364

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BLAST of jgi.p|Trimin1|166628 vs. uniprot
Match: A0A7K6YU69_ALCTO (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Alca torda TaxID=28689 RepID=A0A7K6YU69_ALCTO)

HSP 1 Score: 238 bits (608), Expect = 5.820e-72
Identity = 131/310 (42.26%), Postives = 180/310 (58.06%), Query Frame = 1

Query:   22 YRLKRIEFDGARRPVLCQNEGGPCPLLAILNVLLLRGSVQLHPDYSEVGLHQLVQLLAGHLLELSARHSEPAQAVNFQQQLHGVMELLPRLQYGLDVNVKFLDPQGFEFTKELSTFDLTEVTLFHGWLIDPQDAHMMEAVGSLSYNQLVEILVEYRAALHDLETDPHKAPLASVAERQERARVERLEQLLSRGAAIDHFLADTATQLTYHGLARLHAEVPEGSLCVFFRNNHFSTMHKHHGKLYLLVTDYGYANQPTAVWEKLDAIDGDTVLVNAFFEERNRPRSPPAP---SEEGGADPDHLLALQLQQ 942
            Y +K + +     PV+ QNE GPCPLLAI+NVLLL   ++L P    +   QL++ L  ++LE   +     Q VN++Q +   M +L +LQ GLDVNVKF   + FE+T E   FDL ++ L+HGWL+DPQ A +++AVG+ SYNQLVE ++  + + +                           +L+S G   + FL +TATQLTYHGL  L + V EG LCVFFRNNHFSTM K+ G+LYLLVTD G+  +   VWE L  +DGD    ++ F    RP S P      ++   D D+L+AL LQQ
Sbjct:   74 YHIKWVRWKEENTPVITQNENGPCPLLAIMNVLLLAWKIKLPPIMEIITAEQLMEYLGDYILEAKPKEISEIQRVNYEQNMSDAMAILHKLQTGLDVNVKFTGVRVFEYTPECIVFDLLDIPLYHGWLVDPQVADIVKAVGNCSYNQLVEKIISCKQSDNS--------------------------ELVSEGFVAEQFLNNTATQLTYHGLCELTSAVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEKVVWESLHNVDGDGNFCDSEF--HLRPPSDPETVYRGQQDQIDQDYLMALSLQQ 355

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BLAST of jgi.p|Trimin1|166628 vs. uniprot
Match: A0A8C2V6R8_CHILA (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Chinchilla lanigera TaxID=34839 RepID=A0A8C2V6R8_CHILA)

HSP 1 Score: 237 bits (605), Expect = 6.140e-72
Identity = 136/310 (43.87%), Postives = 178/310 (57.42%), Query Frame = 1

Query:   22 YRLKRIEFDGARRPVLCQNEGGPCPLLAILNVLLLRGSVQLHPDYSEVGLHQLVQLLAGHLLELSARHSEPAQAVNFQQQLHGVMELLPRLQYGLDVNVKFLDPQGFEFTKELSTFDLTEVTLFHGWLIDPQDAHMMEAVGSLSYNQLVEILVEYRAALHDLETDPHKAPLASVAERQERARVERLEQLLSRGAAIDHFLADTATQLTYHGLARLHAEVPEGSLCVFFRNNHFSTMHKHHGKLYLLVTDYGYANQPTAVWEKLDAIDGDTVLVNAFFEERNRPRSPPAPSEEGGADP---DHLLALQLQQ 942
            Y +K I +     PV+ QNE GPCPLLAILNVLLL   V+L P    +   QL++ L  ++L+   +     Q +N++Q +   M +L +LQ GLDVNVKF   + FE+T E   FDL ++ L+HGWL+DPQ    ++AVG+ SYNQLVE ++  +      ++D                      QL S G A + FL  TATQLTYHGL  L A V EG LCVFFRNNHFSTM KH G+LYLLVTD G+  +   VWE L  +DGD    ++ F    RP S P    +G  D    D+L+AL LQ+
Sbjct:   29 YHIKWIRWKDESTPVITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAEQLMEYLGDYMLDAKPKEISEIQRLNYEQNMSDAMAILHKLQTGLDVNVKFSGVRVFEYTPECVVFDLLDIPLYHGWLVDPQTDDAVKAVGNCSYNQLVEKIILCK------QSDD--------------------SQLASEGFAAEQFLNSTATQLTYHGLCELTAAVQEGELCVFFRNNHFSTMTKHQGQLYLLVTDQGFLTEEKVVWESLHNVDGDGNFCDSDF--HLRPPSDPDTVYKGQQDQIDQDYLMALSLQE 310

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|166628 vs. uniprot

BLAST of jgi.p|Trimin1|166628 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A836CCC1_9STRA	1.130e-241	100.00	MINDY_DUB domain-containing protein n=1 Tax=Tribon...	[more]
D7FYU5_ECTSI	3.180e-78	37.03	MINDY_DUB domain-containing protein n=1 Tax=Ectoca...	[more]
A0A8B8DY94_CRAVI	1.940e-73	41.90	Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Cras...	[more]
A0A6S8AMQ2_9STRA	1.980e-73	41.36	Hypothetical protein n=1 Tax=Aplanochytrium stocch...	[more]
G3U203_LOXAF	2.210e-73	42.58	Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Loxo...	[more]
A0A850XHZ8_PIACA	1.770e-72	41.94	Ubiquitin carboxyl-terminal hydrolase (Fragment) n...	[more]
G3U2M7_LOXAF	3.080e-72	42.58	Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Afro...	[more]
A0A7L1JUE8_RYNNI	3.710e-72	42.26	Ubiquitin carboxyl-terminal hydrolase (Fragment) n...	[more]
A0A7K6YU69_ALCTO	5.820e-72	42.26	Ubiquitin carboxyl-terminal hydrolase (Fragment) n...	[more]
A0A8C2V6R8_CHILA	6.140e-72	43.87	Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Chin...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_45	contig	Contig_45:927532..931072 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|166628\|e_gw1.45.69.1
Description	Lys48-specific deubiquitinase activity
COG category	S
Max annot lvl	2759\|Eukaryota
EggNOG OGs	KOG2427@1\|root,KOG2427@2759\|Eukaryota
Evalue	5.22e-79
Seed ortholog	2880.D7FYU5
Hectar predicted targeting category	other localisation
TranscriptId	166950
Track	FilteredModels1
ProteinId	166628

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|166628	gene_6166	Tribonema minus UTEX_B_3156	gene	Contig_45 927532..931072 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|166628	Trimin1\|166628\|e_gw1.45.69.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_45 927532..931072 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_6166_1	exon_6166_1	Tribonema minus UTEX_B_3156	exon	Contig_45 927532..927792 +
exon_6166_2	exon_6166_2	Tribonema minus UTEX_B_3156	exon	Contig_45 928049..928327 +
exon_6166_3	exon_6166_3	Tribonema minus UTEX_B_3156	exon	Contig_45 928973..929076 +
exon_6166_4	exon_6166_4	Tribonema minus UTEX_B_3156	exon	Contig_45 930222..930400 +
exon_6166_5	exon_6166_5	Tribonema minus UTEX_B_3156	exon	Contig_45 930909..931072 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_6166	CDS_6166	Tribonema minus UTEX_B_3156	CDS	Contig_45 927532..927792 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_45:927532..931072+
coding sequence from alignment at Contig_45:927532..931072+

spliced messenger RNA

>mRNA_6166 ID=mRNA_6166|Name=jgi.p|Trimin1|166628|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=987bp|location=Sequence derived from alignment at Contig_45:927532..931072+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCATCCAGGGAGGGAACTACAGGCTAAAACGGATTGAATTTGACGG
CGCTCGGCGGCCTGTGCTATGTCAGAACGAGGGCGGGCCGTGCCCGCTTC
TTGCTATCCTCAACGTGCTACTTCTGCGGGGCTCTGTACAGCTGCATCCC
GACTACAGCGAAGTAGGGTTGCATCAGCTGGTGCAGCTGCTGGCAGGTCA
CTTGTTGGAGCTGTCCGCCAGGCACAGCGAGCCCGCTCAGGCGGTGAATT
TCCAGCAGCAGCTGCATGGCGTCATGGAGTTACTACCCAGGCTTCAGTAC
GGCCTGGATGTCAATGTCAAGTTTCTGGATCCCCAGGGCTTCGAGTTCAC
CAAGGAGCTGTCCACCTTTGACCTCACCGAGGTCACCCTGTTTCACGGCT
GGCTCATAGACCCGCAGGACGCGCACATGATGGAGGCGGTAGGTTCCCTT
AGCTACAACCAACTCGTTGAAATTCTAGTGGAGTACAGAGCAGCGTTGCA
TGATCTGGAGACAGATCCACACAAGGCGCCGCTGGCGTCTGTCGCGGAGC
GGCAAGAGCGGGCGCGCGTGGAGCGGCTGGAGCAGCTGCTGAGCAGGGGC
GCCGCCATCGATCACTTTCTGGCGGACACGGCGACGCAATTAACGTACCA
CGGCCTGGCACGGCTGCACGCGGAGGTGCCGGAGGGCTCCCTGTGCGTCT
TCTTCCGCAACAACCACTTCAGCACCATGCACAAGCACCACGGCAAGTTG
TACCTGCTGGTGACGGACTACGGCTACGCAAATCAGCCAACGGCCGTGTG
GGAGAAGCTGGACGCCATCGACGGTGACACGGTGCTGGTGAATGCATTCT
TTGAGGAGCGCAACCGGCCGCGCTCGCCGCCGGCGCCATCAGAGGAGGGC
GGCGCGGATCCAGACCACCTTCTCGCCTTGCAGCTGCAGCAGGTAGGCAC
TGACACCCGCCGATGCTGCAATCATGTCTGTGCGTGA

protein sequence of jgi.p|Trimin1|166628

>Trimin1|166628|e_gw1.45.69.1 ID=Trimin1|166628|e_gw1.45.69.1|Name=jgi.p|Trimin1|166628|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=329bp
MSIQGGNYRLKRIEFDGARRPVLCQNEGGPCPLLAILNVLLLRGSVQLHP
DYSEVGLHQLVQLLAGHLLELSARHSEPAQAVNFQQQLHGVMELLPRLQY
GLDVNVKFLDPQGFEFTKELSTFDLTEVTLFHGWLIDPQDAHMMEAVGSL
SYNQLVEILVEYRAALHDLETDPHKAPLASVAERQERARVERLEQLLSRG
AAIDHFLADTATQLTYHGLARLHAEVPEGSLCVFFRNNHFSTMHKHHGKL
YLLVTDYGYANQPTAVWEKLDAIDGDTVLVNAFFEERNRPRSPPAPSEEG
GADPDHLLALQLQQVGTDTRRCCNHVCA*

mRNA from alignment at Contig_45:927532..931072+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6166 ID=mRNA_6166|Name=jgi.p|Trimin1|166628|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3541bp|location=Sequence derived from alignment at Contig_45:927532..931072+ (Tribonema minus UTEX_B_3156 )
ATGAGCATCCAGGGAGGGAACTACAGGCTAAAACGGATTGAATTTGACGG
CGCTCGGCGGCCTGTGCTATGTCAGAACGAGGGCGGGCCGTGCCCGCTTC
TTGCTATCCTCAACGTGCTACTTCTGCGGGGCTCTGTACAGCTGCATCCC
GACTACAGCGAAGTAGGGTTGCATCAGCTGGTGCAGCTGCTGGCAGGTCA
CTTGTTGGAGCTGTCCGCCAGGCACAGCGAGCCCGCTCAGGCGGTGAATT
TCCAGCAGCAGGTCAGCACTAGCCTGCTTTAATCACCGCTGCAATTTTTT
GTGCATGTTATGTTCTTGGTAAGCTGTGGTGCAGCAGCTGCTTTCCTGGC
GTCATCAATGCTGTTTTCGGTTCAAATGTTGCTGCTGGTGCTTGTTTCTC
ACATGATGAAGCCACGCTTCAGCAGGGTACATGCCAATCCGAGTTCGCGC
TTCCGGATTCATTTCTACGAATTTGCCCCCTCATCACCACCATCATCGTC
TGATTTTGCTGCAACAGCTGCATGGCGTCATGGAGTTACTACCCAGGCTT
CAGTACGGCCTGGATGTCAATGTCAAGTTTCTGGATCCCCAGGGCTTCGA
GTTCACCAAGGAGCTGTCCACCTTTGACCTCACCGAGGTCACCCTGTTTC
ACGGCTGGCTCATAGACCCGCAGGACGCGCACATGATGGAGGCGGTAGGT
TCCCTTAGCTACAACCAACTCGTTGAAATTCTAGTGGAGTACAGAGCAGC
GTTGCATGATCTGGAGACAGATCCACACAAGGCGCCGCTGGCGTCTGTCG
CAGTTGAAGTTGCTGCCGCACCAGCTCCCGCTGCAGACGCCGTGCAGAGC
GGCACTGCTGCCGCCAGCACCGAAGCAGCTTCAGCTTTTGTGCCTGCAGA
GCCTCCGCCATCGGAGAGCAGCAGCTCTGCTCAGCCAGTGCCGCAGCTGC
CCGCAGTTGAGCCAGCAGACGCGGAGCAGCCGACGGGAGCAGGCGCTATG
GACACCTCCGCTGACGACGCCGCGCAGTCGCCGCCACGCTCAGAGGCCGT
CGAAGCCGCTGAGGCGTTGATCGCGGATGTGGTGGCGGCTGCCACAGGCG
CGCGCGCGGGCGCCGCCGCTGCGGGCGACACCGCAGCAGACGCTGCAGCA
GGCAGCGCGCCGGCGGAAGCAGCAGCGGAGCCCCCCTCCGCTCCAGTCGG
CGCAGCCGCAGACACTCTGCTTGGCGTGCCCGCCGTCGCTCTCACGGCGG
CCGTCGGCGACCGTGACGCGGCGCAGGCGGGGGAGCCGCCGGAAGGGGCA
GCAGCGATGACGGATGAATCGGCAGATGCGGACACCACAGCAGCTGCTGG
TGCGGAGAGGGTGTTGATGGAGGTGGAGGATGTGGCGGCCGCAGCAGCAG
CGGCGCCACTGGCTGCGGCGGCGGCGGCGGTGCGCGGTGAGGTCGCGGAG
CGGCAAGAGCGGGCGCGCGTGGAGCGGCTGGAGCAGCTGCTGAGCAGGGG
CGCCGCCATCGATCACTTTCTGGCGGACACGGCGACGCAATTAACGTGGG
TGCCCATAACCATGGCCATCGGCAATGATTTTATCACTGATCACAATTCA
AATGAGATTTGTGAGGCAACTGGCTAAGTACAGCACTGTGTACATAAGGA
GTTGAAGCTTCCTAGGTAGTGGGGTCGCGCTACAGGGCATCAGATCACAC
CTGGTGCAGTCGTCAATGCCACAGTTGAAGTCGAGCACAACGGTGCGCGT
TTTCAACACCAACAGAACGTATGCGGAGGCCATGGCTATCAGCGCGTTGG
TGATGATGTGCAAAGTTGTGCTGTGGCAGTGCGCTGTCCATCGGCGCTGT
TGAAGTTGAGTTGAGCACAAGATGGGGCCAAATGACTTTGCAAAACCATG
CAGCCCTCTCTCAGTCATCACTCAAGAGGGCTGACATCTGGGACTGCCAC
TCCTACGCCTACGCTCTGTAGTGCAAGACACAGTAATCTTGGCAGAGAAT
TCGTAGCAGCAGGCTCAAAAGATGTACAACAGGCTTGGGTTTCCAGCACC
TCTTCACCAGACAAGCAGGAAAATGATTTTTCCTGAGATGGTGAAGAATT
GAATGTATGTGCCAGATATCTGTGCCAGGAGTATTGACCCCCACAGAAGC
TACCACAGGATGCCCTTGTGGCTTCAAAAGGCTGTTGTTGTGGCACGGTG
ATGTTACCAGCGCATTGATGTTTTGAACTTCGTCATGTTGAACTTGCACC
TGCGGACTCCTGTCTTGGCAAGGCATGCAGAGAAGGAGACGGCTACCTGA
CTGGATAGGCATCTACGAATCAAATCTGCCTACGTTTGCCTACCACCCTC
GACCCTGGCGGGGCATGGGTAGGCTCCGCAATGCAGTGCTTTCTTTATGT
CCTTCAAATACGCCATGACGCCAGATACACAGAAGGCAGCAGACAACCAG
GAGTGCAGGAGTTCAATGTACTGGGTTGTTGCGAGACGGGTTTACGCAGA
TTCACTCACACACACCCTGCCGCTGTTACAAACGTGAGGAGACACAGAGA
AGGCCGGTTCCGACCTTGCACAGCTCATGCATACTTCGCACACCACCAAC
CAAGGGGCTGCCTCAGATGCTGGGCACTGTGCTTTATTCTGACTCTGTGG
CCGTAACCGCCACCTGCGCCCACGATACATACCCCTGCAGGTACCACGGC
CTGGCACGGCTGCACGCGGAGGTGCCGGAGGGCTCCCTGTGCGTCTTCTT
CCGCAACAACCACTTCAGCACCATGCACAAGCACCACGGCAAGTTGTACC
TGCTGGTGACGGACTACGGCTACGCAAATCAGCCAACGGCCGTGTGGGAG
AAGCTGGACGCCATCGACGGTGAGCGCTGCTGCGTGCTCAGTCTTCGAGG
GACTTGACTGTGTGCGAGAAGATACTGTGCAGGCTGCCTGGTTACGGGGC
AGAGACTTGAGGCGGGCTCATTGAGCAACTCATGAGCCGTTGACGTCACA
CTTCAAGAGTTGTTGACAGCAGCGGGGCGCCCTGTCACTGCGCCCTGTCA
CTGCGCCACCAACGCACTGAGCGCGTGCGCTGCTCATGACCATAGCAGGG
GCCGCATCAGCCGCTGCGCGTCAGCGACGCCCATGAGCCGCGGCGCTGCT
TTGCTGACTCTGGGGACCATATGCTTCTCGTACAGTCGCCGCGCTTTGGT
TAACTTTGTGTATCGCCAGGCTTGCCACTTGCCTAGCCCATTTGGTTTCA
CATACATGTGCGCAGCGTGTGTTGGCTCTGCTTGCACAGTAGGGTGGCCT
GCAGAGGGGACCTCTGGTTGCTTGATTCTTGTAAGCTGACGTGGCACCTG
TCACCATCTATGTCAACACTGTCACAGGTGACACGGTGCTGGTGAATGCA
TTCTTTGAGGAGCGCAACCGGCCGCGCTCGCCGCCGGCGCCATCAGAGGA
GGGCGGCGCGGATCCAGACCACCTTCTCGCCTTGCAGCTGCAGCAGGTAG
GCACTGACACCCGCCGATGCTGCAATCATGTCTGTGCGTGA

Coding sequence (CDS) from alignment at Contig_45:927532..931072+

>mRNA_6166 ID=mRNA_6166|Name=jgi.p|Trimin1|166628|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=987bp|location=Sequence derived from alignment at Contig_45:927532..931072+ (Tribonema minus UTEX_B_3156 )
ATGAGCATCCAGGGAGGGAACTACAGGCTAAAACGGATTGAATTTGACGG
CGCTCGGCGGCCTGTGCTATGTCAGAACGAGGGCGGGCCGTGCCCGCTTC
TTGCTATCCTCAACGTGCTACTTCTGCGGGGCTCTGTACAGCTGCATCCC
GACTACAGCGAAGTAGGGTTGCATCAGCTGGTGCAGCTGCTGGCAGGTCA
CTTGTTGGAGCTGTCCGCCAGGCACAGCGAGCCCGCTCAGGCGGTGAATT
TCCAGCAGCAGCTGCATGGCGTCATGGAGTTACTACCCAGGCTTCAGTAC
GGCCTGGATGTCAATGTCAAGTTTCTGGATCCCCAGGGCTTCGAGTTCAC
CAAGGAGCTGTCCACCTTTGACCTCACCGAGGTCACCCTGTTTCACGGCT
GGCTCATAGACCCGCAGGACGCGCACATGATGGAGGCGGTAGGTTCCCTT
AGCTACAACCAACTCGTTGAAATTCTAGTGGAGTACAGAGCAGCGTTGCA
TGATCTGGAGACAGATCCACACAAGGCGCCGCTGGCGTCTGTCGCGGAGC
GGCAAGAGCGGGCGCGCGTGGAGCGGCTGGAGCAGCTGCTGAGCAGGGGC
GCCGCCATCGATCACTTTCTGGCGGACACGGCGACGCAATTAACGTACCA
CGGCCTGGCACGGCTGCACGCGGAGGTGCCGGAGGGCTCCCTGTGCGTCT
TCTTCCGCAACAACCACTTCAGCACCATGCACAAGCACCACGGCAAGTTG
TACCTGCTGGTGACGGACTACGGCTACGCAAATCAGCCAACGGCCGTGTG
GGAGAAGCTGGACGCCATCGACGGTGACACGGTGCTGGTGAATGCATTCT
TTGAGGAGCGCAACCGGCCGCGCTCGCCGCCGGCGCCATCAGAGGAGGGC
GGCGCGGATCCAGACCACCTTCTCGCCTTGCAGCTGCAGCAGGTAGGCAC
TGACACCCGCCGATGCTGCAATCATGTCTGTGCGTGA