mRNA_6125 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|148510
Unique NamemRNA_6125
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|148510 vs. uniprot
Match: A0A835Z078_9STRA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z078_9STRA)

HSP 1 Score: 143 bits (361), Expect = 9.140e-44
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 RRWMAYQLLRALAQCHAAGVCHGDVKSENVLVTSWNWVLLCDFAPFKPTYVPDDQPAEVDYYF 189
            RRWMAYQLLRALAQCHAAGVCHGDVKSENVLVTSWNWVLLCDFAPFKPTYVPDDQPAEVDYYF
Sbjct:    1 RRWMAYQLLRALAQCHAAGVCHGDVKSENVLVTSWNWVLLCDFAPFKPTYVPDDQPAEVDYYF 63
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BLAST of jgi.p|Trimin1|148510 vs. uniprot
Match: A0A8K1C2E6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2E6_PYTOL)

HSP 1 Score: 115 bits (289), Expect = 1.240e-28
Identity = 43/63 (68.25%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:    1 RRWMAYQLLRALAQCHAAGVCHGDVKSENVLVTSWNWVLLCDFAPFKPTYVPDDQPAEVDYYF 189
            ++W+A+Q+LRAL QCHA G+CHGD+K EN++VTSWNWV L DFAPFKPTY+P+D PA+ +YYF
Sbjct:  135 KKWIAFQILRALEQCHAKGICHGDIKQENIMVTSWNWVFLTDFAPFKPTYIPEDDPADYNYYF 197
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BLAST of jgi.p|Trimin1|148510 vs. uniprot
Match: M4BGW9_HYAAE (Non-specific serine/threonine protein kinase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BGW9_HYAAE)

HSP 1 Score: 115 bits (288), Expect = 1.690e-28
Identity = 45/63 (71.43%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:    1 RRWMAYQLLRALAQCHAAGVCHGDVKSENVLVTSWNWVLLCDFAPFKPTYVPDDQPAEVDYYF 189
            ++W+A+QLLRALAQ HA G+CHGD+K ENV+VTSWNWV L DFAPFKPTY+P+D PA+ +YYF
Sbjct:  135 KKWLAFQLLRALAQSHAKGICHGDIKQENVMVTSWNWVFLTDFAPFKPTYIPEDDPADYNYYF 197
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BLAST of jgi.p|Trimin1|148510 vs. uniprot
Match: A0A2D4CEE2_PYTIN (Phosphoinositide 3-kinase regulatory subunit n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CEE2_PYTIN)

HSP 1 Score: 114 bits (285), Expect = 4.290e-28
Identity = 41/63 (65.08%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:    1 RRWMAYQLLRALAQCHAAGVCHGDVKSENVLVTSWNWVLLCDFAPFKPTYVPDDQPAEVDYYF 189
            ++W+A+Q+LRAL QCH+ G+CHGD+K EN++VTSWNW+ L DFAPFKPTY+P+D PA+ +YYF
Sbjct:  135 KKWIAFQILRALEQCHSKGICHGDIKQENIMVTSWNWIFLTDFAPFKPTYIPEDDPADYNYYF 197
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BLAST of jgi.p|Trimin1|148510 vs. uniprot
Match: A0A1W0A189_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A189_9STRA)

HSP 1 Score: 114 bits (285), Expect = 4.300e-28
Identity = 44/63 (69.84%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 RRWMAYQLLRALAQCHAAGVCHGDVKSENVLVTSWNWVLLCDFAPFKPTYVPDDQPAEVDYYF 189
            R+W+A+QLL+AL QCH+ G+CHGD+K ENV+VTSWNW+ L DFAPFKPTY+P+D PAE  YYF
Sbjct:  143 RKWIAFQLLKALEQCHSKGICHGDIKQENVMVTSWNWIFLTDFAPFKPTYMPEDDPAEYYYYF 205
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BLAST of jgi.p|Trimin1|148510 vs. uniprot
Match: A0A7S1CBY9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBY9_9STRA)

HSP 1 Score: 108 bits (270), Expect = 8.960e-28
Identity = 46/63 (73.02%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    1 RRWMAYQLLRALAQCHAAGVCHGDVKSENVLVTSWNWVLLCDFAPFKPTYVPDDQPAEVDYYF 189
            +RW+ +QLLRALAQCH AGV HGDVKSENVLVTSWNWVLL DFAPFKPT +P+D  ++  Y+F
Sbjct:  142 KRWITFQLLRALAQCHGAGVVHGDVKSENVLVTSWNWVLLTDFAPFKPTRLPEDDHSDFHYFF 204
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BLAST of jgi.p|Trimin1|148510 vs. uniprot
Match: A0A0P1AGI3_PLAHL (Non-specific serine/threonine protein kinase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AGI3_PLAHL)

HSP 1 Score: 112 bits (281), Expect = 1.490e-27
Identity = 44/63 (69.84%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 RRWMAYQLLRALAQCHAAGVCHGDVKSENVLVTSWNWVLLCDFAPFKPTYVPDDQPAEVDYYF 189
            ++W+A+Q+LRAL Q HA G+CHGDVK ENV+VTSWNWV L DFAPFKPTY+P+D PA+ +YYF
Sbjct:  135 KKWIAFQILRALEQSHAKGICHGDVKQENVMVTSWNWVFLTDFAPFKPTYIPEDDPADYNYYF 197
[Close]
BLAST of jgi.p|Trimin1|148510 vs. uniprot
Match: A0A225X0L1_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X0L1_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.030e-27
Identity = 43/63 (68.25%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 RRWMAYQLLRALAQCHAAGVCHGDVKSENVLVTSWNWVLLCDFAPFKPTYVPDDQPAEVDYYF 189
            ++W+A+Q+LRAL Q HA G+CHGD+K ENV+VTSWNWV L DFAPFKPTY+P+D PA+ +YYF
Sbjct:  135 KKWIAFQILRALEQSHAKGICHGDIKQENVMVTSWNWVFLTDFAPFKPTYIPEDDPADYNYYF 197
[Close]
BLAST of jgi.p|Trimin1|148510 vs. uniprot
Match: A0A0W8DI87_PHYNI (Non-specific serine/threonine protein kinase n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DI87_PHYNI)

HSP 1 Score: 112 bits (280), Expect = 2.030e-27
Identity = 43/63 (68.25%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 RRWMAYQLLRALAQCHAAGVCHGDVKSENVLVTSWNWVLLCDFAPFKPTYVPDDQPAEVDYYF 189
            ++W+A+Q+LRAL Q HA G+CHGD+K ENV+VTSWNWV L DFAPFKPTY+P+D PA+ +YYF
Sbjct:  135 KKWIAFQILRALEQSHAKGICHGDIKQENVMVTSWNWVFLTDFAPFKPTYIPEDDPADYNYYF 197
[Close]
BLAST of jgi.p|Trimin1|148510 vs. uniprot
Match: A0A6A3T4I0_9STRA (Non-specific serine/threonine protein kinase n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3T4I0_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.040e-27
Identity = 43/63 (68.25%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 RRWMAYQLLRALAQCHAAGVCHGDVKSENVLVTSWNWVLLCDFAPFKPTYVPDDQPAEVDYYF 189
            ++W+A+Q+LRAL Q HA G+CHGD+K ENV+VTSWNWV L DFAPFKPTY+P+D PA+ +YYF
Sbjct:  135 KKWIAFQILRALEQSHAKGICHGDIKQENVMVTSWNWVFLTDFAPFKPTYIPEDDPADYNYYF 197
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148510 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z078_9STRA9.140e-44100.00Protein kinase domain-containing protein (Fragment... [more]
A0A8K1C2E6_PYTOL1.240e-2868.25Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
M4BGW9_HYAAE1.690e-2871.43Non-specific serine/threonine protein kinase n=1 T... [more]
A0A2D4CEE2_PYTIN4.290e-2865.08Phosphoinositide 3-kinase regulatory subunit n=1 T... [more]
A0A1W0A189_9STRA4.300e-2869.84Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S1CBY9_9STRA8.960e-2873.02Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A0P1AGI3_PLAHL1.490e-2769.84Non-specific serine/threonine protein kinase n=1 T... [more]
A0A225X0L1_9STRA2.030e-2768.25Non-specific serine/threonine protein kinase n=1 T... [more]
A0A0W8DI87_PHYNI2.030e-2768.25Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6A3T4I0_9STRA2.040e-2768.25Non-specific serine/threonine protein kinase n=4 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_45contigContig_45:701073..701261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|148510|gw1.45.122.1
BRITEko00000,ko00001,ko01000,ko01001,ko04131
KEGG Pathwayko04136,ko04138,ko04140,ko04371,map04136,map04138,map04140,map04371
KEGG koko:K08333
EC2.7.11.1
DescriptionWD domain, G-beta repeat
COG categoryT
Max annot lvl4776|Peronosporales
EggNOG OGsKOG1240@1|root,KOG1240@2759|Eukaryota,3QCEB@4776|Peronosporales
Evalue2.77e-29
Seed ortholog272952.HpaP805644
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSerine/threonine/dual specificity protein kinase, catalytic domain
Ec32 orthologEc-08_002020.1
TranscriptId148832
TrackFilteredModels1
ProteinId148510
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148510gene_6125Tribonema minus UTEX_B_3156 geneContig_45 701073..701261 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6125_1exon_6125_1Tribonema minus UTEX_B_3156 exonContig_45 701073..701261 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6125CDS_6125Tribonema minus UTEX_B_3156 CDSContig_45 701073..701261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148510Trimin1|148510|gw1.45.122.1Tribonema minus UTEX_B_3156 polypeptideContig_45 701073..701261 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6125 ID=mRNA_6125|Name=jgi.p|Trimin1|148510|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=189bp|location=Sequence derived from alignment at Contig_45:701073..701261+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCAGGTGGATGGCCTACCAGCTCCTGCGCGCGCTGGCGCAGTGCCACGC
GGCCGGCGTCTGCCACGGCGACGTCAAGAGCGAGAACGTGCTCGTCACCT
CGTGGAACTGGGTGCTGCTGTGCGACTTTGCGCCGTTCAAGCCGACGTAC
GTGCCCGACGACCAGCCCGCGGAGGTGGACTACTACTTC
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protein sequence of jgi.p|Trimin1|148510

>Trimin1|148510|gw1.45.122.1 ID=Trimin1|148510|gw1.45.122.1|Name=jgi.p|Trimin1|148510|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=63bp
RRWMAYQLLRALAQCHAAGVCHGDVKSENVLVTSWNWVLLCDFAPFKPTY
VPDDQPAEVDYYF
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mRNA from alignment at Contig_45:701073..701261+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6125 ID=mRNA_6125|Name=jgi.p|Trimin1|148510|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=189bp|location=Sequence derived from alignment at Contig_45:701073..701261+ (Tribonema minus UTEX_B_3156 )
CGCAGGTGGATGGCCTACCAGCTCCTGCGCGCGCTGGCGCAGTGCCACGC
GGCCGGCGTCTGCCACGGCGACGTCAAGAGCGAGAACGTGCTCGTCACCT
CGTGGAACTGGGTGCTGCTGTGCGACTTTGCGCCGTTCAAGCCGACGTAC
GTGCCCGACGACCAGCCCGCGGAGGTGGACTACTACTTC
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Coding sequence (CDS) from alignment at Contig_45:701073..701261+

>mRNA_6125 ID=mRNA_6125|Name=jgi.p|Trimin1|148510|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=189bp|location=Sequence derived from alignment at Contig_45:701073..701261+ (Tribonema minus UTEX_B_3156 )
CGCAGGTGGATGGCCTACCAGCTCCTGCGCGCGCTGGCGCAGTGCCACGC
GGCCGGCGTCTGCCACGGCGACGTCAAGAGCGAGAACGTGCTCGTCACCT
CGTGGAACTGGGTGCTGCTGTGCGACTTTGCGCCGTTCAAGCCGACGTAC
GTGCCCGACGACCAGCCCGCGGAGGTGGACTACTACTTC
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