mRNA_6104 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|349555 vs. uniprot
Match: A0A835YTM0_9STRA (EDR2_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTM0_9STRA) HSP 1 Score: 1216 bits (3147), Expect = 0.000e+0 Identity = 644/644 (100.00%), Postives = 644/644 (100.00%), Query Frame = 1
Query: 1 MQLQAPRSHAWLAEAEGLPVPPTAADFAWVGRLYKRRSGFGKMAAHNWRLRCFGLTRKGTFFYYEEDDFDKVNFANPPRGSLQLVDGDCTFASGRTDSDAHTPYALVVEERRGGHQRWKLCAQSEQDLAALQQAMTKVVEGGGASPPESPLPATKGVPKLARAQSIKGPGAFPLSPVQDSPRCNGGSSCNGXXXXXXXXXXXXXXXXXAGAXRXXAGRASDKRLRAHGGXXXXXXXXAGKXXXXXXXXXXXXXVNTASSSAADPRAIHALALYAQLVNDVLVFLHYWPVELWHPLFFALVAVVNVAIAFGAPRVPPDDDSACIYGAVPLVHVHDLPPLVNHIKVMQLARRARDASAGGGVPPAGATVKRAVGYAAGDAAAPAHTWQDGDVSQFVVRGPKYMTDRVKTPSAPALYTMVGCDFYCTPARVSNVSDAHVSVQEISAQAPVPHLPEIPRVIVVNAQMPNQPPDMFSNSDDGPGLQAIFYFAITQQTVDALRDLDKAPSAVKLWARYCAKHGEDEETRGRFKAMCVVGNWADAGLNANLKGWNGKPVLITKTGETFAGKPAAGGGMTCLEMDINVHRFRFPAKKALHTLMERFEKMILHVGFTIEGRTPDELPEGMLACACLNYPCPDEAEELAARLDA 1932
MQLQAPRSHAWLAEAEGLPVPPTAADFAWVGRLYKRRSGFGKMAAHNWRLRCFGLTRKGTFFYYEEDDFDKVNFANPPRGSLQLVDGDCTFASGRTDSDAHTPYALVVEERRGGHQRWKLCAQSEQDLAALQQAMTKVVEGGGASPPESPLPATKGVPKLARAQSIKGPGAFPLSPVQDSPRCNGGSSCNGXXXXXXXXXXXXXXXXXAGAXRXXAGRASDKRLRAHGGXXXXXXXXAGKXXXXXXXXXXXXXVNTASSSAADPRAIHALALYAQLVNDVLVFLHYWPVELWHPLFFALVAVVNVAIAFGAPRVPPDDDSACIYGAVPLVHVHDLPPLVNHIKVMQLARRARDASAGGGVPPAGATVKRAVGYAAGDAAAPAHTWQDGDVSQFVVRGPKYMTDRVKTPSAPALYTMVGCDFYCTPARVSNVSDAHVSVQEISAQAPVPHLPEIPRVIVVNAQMPNQPPDMFSNSDDGPGLQAIFYFAITQQTVDALRDLDKAPSAVKLWARYCAKHGEDEETRGRFKAMCVVGNWADAGLNANLKGWNGKPVLITKTGETFAGKPAAGGGMTCLEMDINVHRFRFPAKKALHTLMERFEKMILHVGFTIEGRTPDELPEGMLACACLNYPCPDEAEELAARLDA
Sbjct: 1 MQLQAPRSHAWLAEAEGLPVPPTAADFAWVGRLYKRRSGFGKMAAHNWRLRCFGLTRKGTFFYYEEDDFDKVNFANPPRGSLQLVDGDCTFASGRTDSDAHTPYALVVEERRGGHQRWKLCAQSEQDLAALQQAMTKVVEGGGASPPESPLPATKGVPKLARAQSIKGPGAFPLSPVQDSPRCNGGSSCNGXXXXXXXXXXXXXXXXXAGAXRXXAGRASDKRLRAHGGXXXXXXXXAGKXXXXXXXXXXXXXVNTASSSAADPRAIHALALYAQLVNDVLVFLHYWPVELWHPLFFALVAVVNVAIAFGAPRVPPDDDSACIYGAVPLVHVHDLPPLVNHIKVMQLARRARDASAGGGVPPAGATVKRAVGYAAGDAAAPAHTWQDGDVSQFVVRGPKYMTDRVKTPSAPALYTMVGCDFYCTPARVSNVSDAHVSVQEISAQAPVPHLPEIPRVIVVNAQMPNQPPDMFSNSDDGPGLQAIFYFAITQQTVDALRDLDKAPSAVKLWARYCAKHGEDEETRGRFKAMCVVGNWADAGLNANLKGWNGKPVLITKTGETFAGKPAAGGGMTCLEMDINVHRFRFPAKKALHTLMERFEKMILHVGFTIEGRTPDELPEGMLACACLNYPCPDEAEELAARLDA 644
BLAST of jgi.p|Trimin1|349555 vs. uniprot
Match: D7G6C9_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6C9_ECTSI) HSP 1 Score: 299 bits (765), Expect = 3.220e-89 Identity = 204/636 (32.08%), Postives = 305/636 (47.96%), Query Frame = 1
Query: 31 WLAEAEGLPVPPTAADFAWVGRLYKRRSGFGKMAAHNWRLRCFGLTRKGTFFYYEEDDFDKVNFANPPRGSLQLVDGDCTFASGRTDSDAHTPYALVVEERRGGHQRWKLCAQSEQDLAALQQAMTKVVEGGGASPPESPLPATKGVPKLARAQSIKGPGAFPLSPVQDSPRCNGGSSCNGXXXXXXXXXXXXXXXXXAGAXRXXAGRASDKRLRAHGGXXXXXXXXAGKXXXXXXXXXXXXXVNTASSSAADPRAIHALALYAQLVNDVLVFLHYWPVELWHPLFFALVAVVNVAIAFGAPRVPPDDDSACIYGA-VPLVHVHDLPPLVNHIKVMQLARRARDASAGG-------GVPPAGATVKRAVGYAAGDAAAPAHTWQDGDVSQFVVRGPKYMTDRVKTPSAPALYTMVGCDFYCTPARVSNVSDAHVSVQEISAQAPVPHLPEIPRVIVVNAQMPNQPPDMFSNSDDGPGLQAIFYFAITQQTVDALRDLDKAPSAVKLWARYCAKHGEDEETRGRFKAMCVVGNWADAGLNANLKGWNGKPVLITKTGETFAGKPAAGGGMTCLEMDINVHRFRFPAKKALHTLMERFEKMILHVGFTIEGRTPDELPEGMLACACLNYPCPDEAEEL 1914
WL + +PVPPT DF G L KRR GFGKM+ W+ RCF L + G Y++ FD V+F PPRG L L + + D D +LV++ GG QRWKL +++ ++ ++A+ V+G +S + + T R + K + P + V+ R S NG R + RA+ ++ D R LA V+ V LH L +F+A V +N+ I +G R S G VP++H D+ L +K ++ G GVP AG+T ++ G A G AP H+W +G S F VRG YM D++K A +LY MVG D + T ARV N++ + V + + P +P +P ++V+N Q+P+ P + ++++DGPG+Q + YF + + T A+ +L A V+LW YC + G D++ +GRFK + V+ N GL + + +NGKPVLI ++G G+ +E INVHRF F AKK+LH+L F+ M+LH+GFT+EGR DELPE +LAC+ L+YP + A E
Sbjct: 12 WLTDHAAIPVPPTKQDFILAGNLLKRRGGFGKMSQQKWKNRCFVLLKTGNLCYFQAGSFDSVDFCEPPRGILTLDEDVVISKNTPPDGDFTGTSSLVIQ---GGGQRWKLSSEAPGEINRWEEALRSFVKGSPSSGGPTRISDTSMRSPTFRLGTSKSLSS-PPNGVKQRTRTPSPPSQNGT--------------------RSPSARAT------------------------------AVVTEESAQGGTDTRGAWTLACVLTAVDVVCYLLHQREFSL--KVFYAAVFTLNLIIGWGIRRSADRPASGERSGTGVPVIHGDDVGALRVALKRRFPPKKDTPLLPLGDGREIPCGVPVAGSTTQQYDGPA-GSLTAPHHSWSNGIDSVFHVRGKGYMQDKLKVSPAESLYDMVGLDIFSTEARVGNMA-SEVVLDTATKDLPAVSVPGVPPLLVINVQLPSASPALMTSAEDGPGVQCVMYFRMKESTARAMENLATASEGVRLWVTYCQRVGVDDDFQGRFKCIAVIANSESLGLPSFITKYNGKPVLINRSGHWVKGE-------NYIENTINVHRFSFIAKKSLHSLKGLFKDMVLHLGFTVEGRAADELPESLLACSTLHYPMMERAVEF 582
BLAST of jgi.p|Trimin1|349555 vs. uniprot
Match: W7U5D7_9STRA (EDR2_C domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5D7_9STRA) HSP 1 Score: 156 bits (395), Expect = 4.780e-38 Identity = 99/271 (36.53%), Postives = 135/271 (49.82%), Query Frame = 1
Query: 1135 AAPAHTWQDGDVSQFVVRGPKYMTDRVKTPSAPALYTMVGCDFYCTPARVSNVSDAHVS-VQEISAQAPVPHLPEIPRVIVVNAQMPNQPPDMFSNSDDGPGLQAIFYFAITQQTVDAL-------------------RDLDKAPSAVKLWARYCAKHGEDEETRGRFKAMCVVGNWADAGLNANLKGWNGKPVLITKTGETFAGKPAAGG-GMTCLEMDINVHRFRFPAKKALHTLMERFEKMILHVGFTIEGRTPDELPEGMLACACLN 1884
A P H+W S F VR Y + K PS A Y +V D A V V+ HV + ++ P P +P + +VN Q+P+ P MF+ SD+GPG AIF FA+ + TVD L R+ P A++L Y + D + RGR K + N L + + +NGKPVLITK+G G ++ G + +EMDI VHRF + A+K L +RF KMIL + F +EGR DELPE +L A LN
Sbjct: 119 ALPRHSWGHTSASSFRVRSRHYKRAKKKEPSLEAFYKLVSFDLI--KASVGCVN--HVGRLMDLEKVRPARSFPGLPPLFIVNTQLPDGEPAMFNASDNGPGRSAIFVFALKESTVDMLEAHADSPSAAVRERKGKDHREAFSVPPALQLLQEYFRRAPHDPDVRGRLKVIASCANMDALHLPSFISNYNGKPVLITKSGRLHQGISSSNGEDLLYIEMDICVHRFAYVARKGFRYLQKRFSKMILDIAFLVEGREEDELPEQILGAARLN 385
BLAST of jgi.p|Trimin1|349555 vs. uniprot
Match: A0A7S2W974_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W974_9STRA) HSP 1 Score: 151 bits (382), Expect = 1.370e-36 Identity = 92/275 (33.45%), Postives = 137/275 (49.82%), Query Frame = 1
Query: 1147 HTWQDGDVSQFVVR-GPKYMTDRVKTPSAPALYTMVGCDFYCTPARVSNVSDAHVSVQEISAQAPVPHLPEIPRVIVVNAQMPNQPPDMFSNSDDGPGLQAIFYFAITQQTVDALRDLDKAPSAVKLWARYCAKHGEDEETRGRFKAMCVVGNWADAGLNANLKGWNGKPVLITKTGETFAGKPAAGGGMTCLEMDINVHRFRFPAKKALHTLMERFEKMILHVGFTIEGRTPDELPEGMLACACLNYPCPDEAEELAARLDA*RRSSDRGEGSR 1968
H W+ GD +F +R GP Y K PS P L ++ D + + A V N+ + +++ E + PVP +P + VV+ +P + P M NS+ GP L A+FYF + ++T AL L+ AP AV+L +C D RFK + ++ N+ + G+ + +KG+NGKPVLI G + M +NV + A+ LHTL K L VGFTIEGR DELPE +L + + DE + + EGS+
Sbjct: 80 HAWEPGDHQRFRLRVGPNYKKYGRKEPSGPVLLELLEVDLFKSSALVHNLGE-FIALPE--PRVPVPEGSAVPPIFVVHGSLPFEAPSMLGNSN-GPTLNAVFYFGLREETQQALASLETAPKAVQLLETFCRSAHADPSVFNRFKCIGMLRNYEEVGMPSIMKGYNGKPVLIRNRSAVKGGSGVMDQQQDSIIMHVNVRLWPLLARTGLHTLFGASAKCDLDVGFTIEGRADDELPEVLLGAVHIAHLRLDELPQWPPPIGGGGAKLSHQEGSQ 350
BLAST of jgi.p|Trimin1|349555 vs. uniprot
Match: A0A6S9LM18_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LM18_HETAK) HSP 1 Score: 150 bits (380), Expect = 1.830e-36 Identity = 94/257 (36.58%), Postives = 132/257 (51.36%), Query Frame = 1
Query: 1147 HTWQDGDVSQFVVRGPKYMTDRVKTPSAPALYTMVGCDFYCTPARVSNVSDAHVSVQEISAQAPVPHL-----PEIPRVIVVNAQMPN------QPPDMFSNSDDGPGLQAIFYFAITQQTVDALRDLDK------APSAVKLWARYCAKHGEDEETRGRFKAMCVVGNWADAGLNANLKGWNGKPVLITKTGETFAGKPAAGGGMTCLEMDINVHRFRFPAKKALHTLMERFEKMILHVGFTIEGRTPDELPEGML 1866
H+W+ F VR P Y + K PS PA Y + D + TP R + + + + P PH P++P V VVN Q+PN P + DGP Q +F+F IT+QT D LR L + P A++LWA +C + E R +FKAM +V N + L + +NGKP LIT +G + GG + L+MDINVHRF + A+K L + E+ E+ + VGFT+E R + LPE ML
Sbjct: 110 HSWEPSPADMFRVRQPGYSSTGQKAPSGPAFYETLRVDTFRTPER----REGRLVPRTLR---PCPHTVESGHPDVPSVFVVNCQIPNIDGAVVHSPFNKNPEYDGPCFQIVFHFGITEQTRDWLRQLQEEGAAAAVPPALRLWALWCREAPASFERRAQFKAMAMVDNPEELNLPGLVLRYNGKPALITNSGTL------SRGGPSLLQMDINVHRFAYLARKGLDMVKEKLEQGRIRVGFTVESREEEHLPEQML 353
BLAST of jgi.p|Trimin1|349555 vs. uniprot
Match: A0A6T8K6G2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8K6G2_9STRA) HSP 1 Score: 146 bits (368), Expect = 3.210e-36 Identity = 80/230 (34.78%), Postives = 126/230 (54.78%), Query Frame = 1
Query: 1198 YMTDRVKTPSAPALYTMVGCDFYCTPARVSNVSDAHVSVQEISAQAPVPH-LPEIPRVIVVNAQMPNQPPDMFSNSDDGPGLQAIFYFAITQQTVDALRDLDKAPSAVKLWARYCAKHGEDEETRGRFKAMCVVGNWADAGLNANLKGWNGKPVLITKTGETFAGKPAAGGGMTCLEMDINVHRFRFPAKKALHTLMERFEKMILHVGFTIEGRTPDELPEGMLACACLN 1884
Y ++VK PS PAL+ + D + + ++NV+D I + +P +IV+N +P + P +F ++DG I Y I + T++ L+D++KA AVKL +C K D R R KAMC++ + ++ L + +NGKPVLITK+ TF P +E+ +N+H++ + KK L +L +F + +VGFTIEGR DELPE +L A +N
Sbjct: 1 YSRNKVKRPSRPALFDLYASDMVRSSSMLNNVADDFQIPDNIDGVTKIDTGNVHVPSLIVLNFNIPTEEPSVFGKAEDGETCVLILYLVIAKHTINQLKDMNKASPAVKLLVEWCKKSENDFSMRSRMKAMCLIDDVENSSLPGFISRFNGKPVLITKS-STFTRFP------NYIELQVNIHKWAYMPKKGLFSLQPKFPSLAFNVGFTIEGREDDELPEVLLGGARIN 223
BLAST of jgi.p|Trimin1|349555 vs. uniprot
Match: A0A7S2M600_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M600_9STRA) HSP 1 Score: 144 bits (363), Expect = 1.010e-32 Identity = 88/265 (33.21%), Postives = 138/265 (52.08%), Query Frame = 1
Query: 1147 HTWQDGDVSQFVVR-GPKYMTDRVKTPSAPALYTMVGCDFYCTPARVSNVSDAHVSVQEISAQAPVPHLP----------EIPRVIVVNAQMPNQPPDMFSNSDDGPGLQAIFYFAITQQTVDALRDLDKAPSAVKLWARYCAKHGEDEETRGRFKAMCVVGNWADAGLNANLKGWNGKPVLITKTGETFAGKPAAGGGMTCLEMDINVHRFRFPAKKALHTLMERFEKMILHVGFTIEGRTPDELPEGMLA-CACLNYPCPDEA 1905
H++ D S F +R GP Y ++ K PSAPALY + DF + NVSD + +P +P IP ++V+N +P + P +F+ + DG F +++ T++ L+D+D A VKL + +C + + + +GRFK M + + + + G+NGKP L+TK+G TF +E INV+ + F A+K LH+LM F+ I +VGFTIE R +E+PE +L C +N PD+A
Sbjct: 346 HSYVQTDSSLFNLRIGPNYKRNKQKAPSAPALYDLYSMDFLYDSTALKNVSD----------KFKIPSIPGITDVSTGHAHIPPMLVINTWLPGEEPSVFAKNTDGDTYSIPMVFVLSKDTLEQLKDIDTASPGVKLLSEWCRRAESEPDFKGRFKCMGQIEDIESTSIPKFIHGYNGKPALVTKSG-TFTRHE------NYIEFTINVNYWAFLARKGLHSLMPYFQDFIFNVGFTIEARHDEEMPEVLLGGCRIMNLD-PDKA 592
BLAST of jgi.p|Trimin1|349555 vs. uniprot
Match: A0A7S2MX10_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MX10_9STRA) HSP 1 Score: 138 bits (347), Expect = 1.420e-32 Identity = 88/243 (36.21%), Postives = 130/243 (53.50%), Query Frame = 1
Query: 1147 HTWQDGDVSQFVVR-GPKYMTDRVKTPSAPALYTMVGCDFYCTPARVSNVSDAHVSVQEISAQAPVPHLPE-IPRVIVVNAQMPNQPPDMFSNSD-DGPGLQAIFYFAITQQTVDALRDLDKAPSAVKLWARYCAKHGEDEETRGRFKAMCVVGNWADAGLNANLKGWNGKPVLITKTGETFAGKPAAGGGMTCLEMDINVHRFRFPAKKALHTLMERFEKMILHVGFTIEGRTPDELPEGML 1866
H++ D S F +R GP Y + K PS ALY +V DF + + DA + + I V E +P ++VVN+ +P + SN + P + FAI Q V+ L+D+D A AVKL A +C + + E RGRFKA+ +V G+ + +NGKP LITK+G + +EM INVH + + A+K + TL+ F K++++VGFTIEGR+ ELPE +L
Sbjct: 22 HSYMGVDASTFHLRVGPNYKKKKTKAPSGSALYELVSMDFIQAETFLKDAKDA-IELPSIPGVTDVETGNEFVPPMLVVNSWLPTKDHGPLSNGKLEKPSYICVIVFAIEQWVVEELKDIDNASPAVKLLAEWCREAETNVEFRGRFKAIGLVEEMEKMGIPGFITQYNGKPTLITKSGNFTRHEKY-------IEMAINVHLWAYVARKGMLTLLPSFAKLLINVGFTIEGRSDMELPEVLL 256
BLAST of jgi.p|Trimin1|349555 vs. uniprot
Match: A0A6S8XZU4_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8XZU4_9STRA) HSP 1 Score: 144 bits (362), Expect = 2.060e-32 Identity = 86/237 (36.29%), Postives = 129/237 (54.43%), Query Frame = 1
Query: 1165 DVSQFVVR-GPKYMTDRVKTPSAPALYTMVGCDFYCTPARVSNVSDAHVSVQEISAQAPVP--HLPEIPRVIVVNAQMPNQPPDMFSNSDDGPGLQAIFYFAITQQTVDALRDLDKAPSAVKLWARYCAKHGEDEETRGRFKAMCVVGNWADAGLNANLKGWNGKPVLITKTGETFAGKPAAGGGMTCLEMDINVHRFRFPAKKALHTLMERFEKMILHVGFTIEGRTPDELPEGML 1866
D F +R GP Y +R+K PS+PALY ++ DF + SDA +V I + H P +P + V+NA +P + +F D P + + AI + T+ AL+D+D AP AVKL+A +C D+E R RFKA+ +V + + + + +NGKP L+TK+G TF +E +NVH + F A+K L TL +F + +L +GFTIE + ELPE +L
Sbjct: 397 DARNFNLRVGPNYKKNRLKEPSSPALYDLISVDFIRADTTLKKASDAF-TVPNIPGITDIDTGH-PHVPPMFVINAWIPLEDHGVFGKVTDAPSINCVMCLAIAEHTLKALKDIDNAPPAVKLFAEWCRIAETDDEFRARFKALGIVCDIEKTNIPSFIASYNGKPALVTKSG-TFIRHEHY------IEFCVNVHMWGFLARKGLVTLTPKFAEFVLDIGFTIEAKRDHELPEVLL 624
BLAST of jgi.p|Trimin1|349555 vs. uniprot
Match: A0A7S4JEV7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4JEV7_9EUKA) HSP 1 Score: 133 bits (335), Expect = 4.420e-31 Identity = 91/255 (35.69%), Postives = 137/255 (53.73%), Query Frame = 1
Query: 1171 SQFVVR-GPKYMTDRVKTPSAPALYTMVGCDFYCTPARVSNVSDAHVSVQEISAQAPVPHLP--EIPRVIVVNAQMPNQPPDMFSNSDD-GPGLQAIFYFAITQQTVDALRDLDKAPSA-VKLWARYCAKHGEDEETRGRFKAMCVVGNWADAGLNANLKGWNGKPVLITKTGETFAGKPAAGGGMTCLEMDINVHRFRFPAKKALHTLMERFEKMILHVGFTIEGRTPDELPEGMLACACLNYPCPDEAEELAA 1920
S F VR GP Y + K PSA +LY + D + + ++++ I P+P P ++P+V++V Q+P + P +FS S D G L A F F + ++ + APSA V+L ARY A+ D+E + FK + N+ GL +K +NGKPV+I ++GE +AG+ GG+ LE DI V R+ AK+ +HTLM R+ ++ +GF ++G DELPE ML A L + EL A
Sbjct: 54 SSFHVRIGPNYPKNGQKAPSADSLYELFSVDLFTSRECAFHLAE------RIKLPPPLPDAPGLQLPQVLLVTVQVPQEAPGLFSGSQDKGSALTAAFTFHLRKEVL--ANAASAAPSAAVQLLARYYARATSDQEMKKTFKMIGRARNYDALGLPGWMKRFNGKPVIIHQSGEVYAGER---GGVRYLEEDILVGRWSLWAKQGVHTLMPRYPEIDAEIGFVLQGTEDDELPEVMLGAARLPFIDVSNFPELPA 297 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349555 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6104 ID=mRNA_6104|Name=jgi.p|Trimin1|349555|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2030bp|location=Sequence derived from alignment at Contig_45:556138..567552- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCAGCTTCAGGCACCTCGGAGCCATGCCTGGCTGGCGGAGGCGGAGGGback to top protein sequence of jgi.p|Trimin1|349555 >Trimin1|349555|estExt_Genemark1.C_Ctg_450070 ID=Trimin1|349555|estExt_Genemark1.C_Ctg_450070|Name=jgi.p|Trimin1|349555|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=645bp MQLQAPRSHAWLAEAEGLPVPPTAADFAWVGRLYKRRSGFGKMAAHNWRLback to top mRNA from alignment at Contig_45:556138..567552- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6104 ID=mRNA_6104|Name=jgi.p|Trimin1|349555|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=11415bp|location=Sequence derived from alignment at Contig_45:556138..567552- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_45:556138..567552- >mRNA_6104 ID=mRNA_6104|Name=jgi.p|Trimin1|349555|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1935bp|location=Sequence derived from alignment at Contig_45:556138..567552- (Tribonema minus UTEX_B_3156 )back to top |