mRNA_6023 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348985
Unique NamemRNA_6023
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348985 vs. uniprot
Match: A0A835Z3A8_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3A8_9STRA)

HSP 1 Score: 737 bits (1903), Expect = 6.220e-268
Identity = 386/386 (100.00%), Postives = 386/386 (100.00%), Query Frame = 2
Query:   50 MAQAEVAAAALCTHSDGVSLSPAMTKKAARRWPAVLAAVVAGALMVLALTSNVRSSRSSLSRVDTVMDESRQLPSARSXXXXXXXXXXXXXXXTIGVSMGSMAIDDREKQVGAHIPIAMTFQPCMNVLKTWDDEIVRRQKLGHEIVLVLEFNETSKKVKALDLVLSGFYDKKLRKIGRRFGRMKKHRVWVRILHEFNSDWYPWGTFKEGNSIPKFKQAYRYIVKRLRKHGAGDNIKFQLSYNARSSGGDKIDFSKWWPGDAYVDMIMITAYNRAGTLEGTEKPFQQFAEFFPESYKRVAALHPTKPIGISEAGSTDAKGAQAKADWYYNMFKTLKESHAFPRLAQVNFFLEDKIYDWRLDTREEQTRFGDGMRLLGYKAIKRDGES 1207
            MAQAEVAAAALCTHSDGVSLSPAMTKKAARRWPAVLAAVVAGALMVLALTSNVRSSRSSLSRVDTVMDESRQLPSARSXXXXXXXXXXXXXXXTIGVSMGSMAIDDREKQVGAHIPIAMTFQPCMNVLKTWDDEIVRRQKLGHEIVLVLEFNETSKKVKALDLVLSGFYDKKLRKIGRRFGRMKKHRVWVRILHEFNSDWYPWGTFKEGNSIPKFKQAYRYIVKRLRKHGAGDNIKFQLSYNARSSGGDKIDFSKWWPGDAYVDMIMITAYNRAGTLEGTEKPFQQFAEFFPESYKRVAALHPTKPIGISEAGSTDAKGAQAKADWYYNMFKTLKESHAFPRLAQVNFFLEDKIYDWRLDTREEQTRFGDGMRLLGYKAIKRDGES
Sbjct:    1 MAQAEVAAAALCTHSDGVSLSPAMTKKAARRWPAVLAAVVAGALMVLALTSNVRSSRSSLSRVDTVMDESRQLPSARSXXXXXXXXXXXXXXXTIGVSMGSMAIDDREKQVGAHIPIAMTFQPCMNVLKTWDDEIVRRQKLGHEIVLVLEFNETSKKVKALDLVLSGFYDKKLRKIGRRFGRMKKHRVWVRILHEFNSDWYPWGTFKEGNSIPKFKQAYRYIVKRLRKHGAGDNIKFQLSYNARSSGGDKIDFSKWWPGDAYVDMIMITAYNRAGTLEGTEKPFQQFAEFFPESYKRVAALHPTKPIGISEAGSTDAKGAQAKADWYYNMFKTLKESHAFPRLAQVNFFLEDKIYDWRLDTREEQTRFGDGMRLLGYKAIKRDGES 386          
BLAST of jgi.p|Trimin1|348985 vs. uniprot
Match: A0A836CKF0_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKF0_9STRA)

HSP 1 Score: 322 bits (824), Expect = 9.010e-107
Identity = 146/198 (73.74%), Postives = 168/198 (84.85%), Query Frame = 2
Query:  611 VWVRILHEFNSDWYPWGTFKEGNSIPKFKQAYRYIVKRLRKHGAGDNIKFQLSYNARSSGGDKIDFSKWWPGDAYVDMIMITAYNRAGTLEGTEKPFQQFAEFFPESYKRVAALHPTKPIGISEAGSTDAKGAQAKADWYYNMFKTLKESHAFPRLAQVNFFLEDKIYDWRLDTREEQTRFGDGMRLLGYKAIKRDGE 1204
            +WVRILHEFNSDWYPWGTFK+GNSIPKFK+++R+IV  LR +GAGDNIKFQ+SYNA+S  GDKI FS WWPGD YVDMIM TAYNRAG  EG+ KPF QF+E FP+SYKRVAALHPT PIGI+E GSTDA G +AK +WY NMFKTLK S  FPRL QVN F+E+K  DW+L TR++Q  FG+GMRLLGYKAIKR+GE
Sbjct:    1 MWVRILHEFNSDWYPWGTFKDGNSIPKFKKSFRHIVDLLRANGAGDNIKFQISYNAKSVHGDKIPFSAWWPGDEYVDMIMTTAYNRAGDSEGSNKPFLQFSELFPDSYKRVAALHPTLPIGIAECGSTDADGEKAKGEWYLNMFKTLKTSDQFPRLKQVNVFMENKFLDWQLTTRQQQIAFGNGMRLLGYKAIKREGE 198          
BLAST of jgi.p|Trimin1|348985 vs. uniprot
Match: A0A835YLQ0_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLQ0_9STRA)

HSP 1 Score: 193 bits (491), Expect = 1.680e-55
Identity = 108/288 (37.50%), Postives = 167/288 (57.99%), Query Frame = 2
Query:  332 IGVSMGSMAIDDREKQVGAHIPIAMTFQPCMNVLKTWDDEIVRRQKLGHEIVLVLEFNETSKKVKALDLVLSGFYD---KKLRKIGRRFGRMKKHRVWVRILHEFNSDWYPWGTFKEG----NSIPKFKQAYRYIVKRLRKHGAGDNIKFQLSYNARSSGGDKIDFSKWWPGDAYVDMIMITAYNRAGTLEGTEKPFQQFAEFFPESYKRVAALHPTKPIGISEAGSTDAKGAQAKADWYYNMFKTLKESHAFPRLAQVNFFLEDKIYDWRLDTREEQTRFGDGMRLL 1174
            +GV+  ++ I+D E +V A +     +Q    +   W+         G  + +V+EF +       L  +L G +D   K + K+ +  GR    RVW+R LHEFNSDWY WGT+++G    N+  +FK+A+R IV   R+ GA  N+++QLSYN  S   D   FS+WWPG   VDM+  +AYNRAG ++   K F+ F E +  +Y R+  L  T  +G+ E  ++   G+  ++DW+Y  FK++ + H +PR+  +NFFLE+K  DWRL+T+ E+  FG G+RLL
Sbjct:    7 VGVTTDTVDINDLEDEVNAKLQNVNIYQDVRKLADAWEWIPPLDDHKG--VSMVMEFQDAK-----LQDILDGKFDSDMKNVAKVAKEDGR----RVWMRPLHEFNSDWYSWGTYRDGFEKVNTRDQFKKAFRKIVTLFRQEGA-TNLRWQLSYNNNSPKDDPRPFSEWWPGRDVVDMVTCSAYNRAG-IDSYHKDFKSFDEVYGPAYDRMKKLDKTVKLGVGETSTSGVGGS--RSDWFYGAFKSIADGH-YPRMRLINFFLENKDMDWRLNTQSEKDAFGRGLRLL 278          
BLAST of jgi.p|Trimin1|348985 vs. uniprot
Match: A0A835YT60_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT60_9STRA)

HSP 1 Score: 159 bits (401), Expect = 2.880e-42
Identity = 88/272 (32.35%), Postives = 141/272 (51.84%), Query Frame = 2
Query:  365 DREKQVGAHIPIAMTFQPCMNVLKTWDDEIVRRQKLGHEIVLVLEFNETSKKVKALDLVLSGFYDKKLRKIGRRFGRMKKHRVWVRILHEFNSDWYPWGTFKEGNSIPKFKQAYRYIVKRLRKHGAGDNIKFQLSYNARSSGGDKIDFSKWWPGDAYVDMIMITAYNRAGTLEGTEKPFQQFAEFFPESYKRVAALHPTKPIGISEAGSTDAKGAQAKADWYYNMFKTLKESHAFPRLAQVNFFLEDKIYDWRLDTREEQTRFGDGMRLLGY 1180
            +RE Q+GA+  + + +Q   ++   +   + +    G ++               L  ++ G +D +L             ++W+R LHEFN DWYPWGT+++GN    FK+A+R++V   R  G G N+KFQL+YN  +   D   F  W+PG   VDMI+ + YNRAG ++     +Q F+E F   Y ++A+L   KP+G++E  ST   G   KA W  + F  +     F R+ Q N+FL +K  DW L++  E+  FGD +    +
Sbjct:   13 EREGQIGANFGVIVKYQALSDLGGKYQYLVKQYLDGGKDVXXXXXXXXXG--YSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDGNDTDTFKRAFRHVVDVFR--GRGANVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAG-VDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGGD--KAQWIRDAFDAVVNQ--FTRVEQCNWFLINKAGDWDLNSDSERHAFGDSLNEYSW 275          
BLAST of jgi.p|Trimin1|348985 vs. uniprot
Match: A0A835Z4M7_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4M7_9STRA)

HSP 1 Score: 159 bits (401), Expect = 2.960e-42
Identity = 89/233 (38.20%), Postives = 134/233 (57.51%), Query Frame = 2
Query:  473 GHEIVLVLEFNETSKKVKALDLVLSGFYDKKLRKIGRRFGRMKKHRVWVRILHEFNSDWYPWGTFKEGNS-IPKFKQAYRYIVKRLRKHGAGDNIKFQLSYNARSSGGDKIDFSKWWPGDAYVDMIMITAYNRAGTLEGTEKPFQQFAEFFPESYKRVAALHPTKPIGISEAGSTDAKGAQAKADWYYNMFKTLKESHAFPRLAQVNFFLEDKIY-DWRLDTREEQTRFGDGM 1165
            G E+V+V+EF +   K   LDL+  G+YD  L +            V +R LHEFN DWY WGT   GN+ IP F  A+++I +      A  N++FQL+YN ++   D   F+ WWPG  YVDM++ + YNRAG+    +  +Q F + F  +Y ++AAL+PT P+GI E  + +  G   KA W  + F ++  + AFPRL Q  +FL++K   +W L++ E+ T F  G+
Sbjct:   46 GFEVVMVMEFLDDEVKTN-LDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRA--NVQFQLAYNCKNGQNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGETSTVELAGYD-KAQWIRDAFASM--ATAFPRLRQATWFLQNKDDGEWDLNSEEQITAFSKGL 272          
BLAST of jgi.p|Trimin1|348985 vs. uniprot
Match: A0A835YVC0_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC0_9STRA)

HSP 1 Score: 157 bits (396), Expect = 9.820e-42
Identity = 86/236 (36.44%), Postives = 130/236 (55.08%), Query Frame = 2
Query:  473 GHEIVLVLEFNETSKKVKALDLVLSGFYDKKLRKIGRRFGRMKKHRVWVRILHEFNSDWYPWGTFKEGNSIPKFKQAYRYIVKRLRKHGAGDNIKFQLSYNARSSGGDKIDFSKWWPGDAYVDMIMITAYNRAGTLEGTEKPFQQFAEFFPESYKRVAALHPTKPIGISEAGSTDAKGAQAKADWYYNMFKTLKESHAFPRLAQVNFFLEDKIYDWRLDTREEQTRFGDGMRLLGY 1180
            G  +VLV EF + S     L  +  G +D  L K    +      +VW+R +HEFN DWY WGT++ GNS   FK+A++++    +  GA  N KFQL YN  +   D   FS WWPG   VDMI+ + YNRAG L+   + +Q F++ +   Y ++AAL   KP+G++E  ST  + + +K  W  + F  L     F R+ Q N+FL +K  +W L++ +E+  FGD +    +
Sbjct:   31 GKSVVLVTEFIDGS--YANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNGNSQALFKRAFQHVAYVFKNRGA--NAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAG-LDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQ-SYSKPQWIKDAFNALVNK--FTRVEQCNWFLINKDGNWGLNSDDERHAFGDSINQYSW 258          
BLAST of jgi.p|Trimin1|348985 vs. uniprot
Match: A0A835YWE9_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWE9_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.940e-41
Identity = 100/271 (36.90%), Postives = 146/271 (53.87%), Query Frame = 2
Query:  368 REKQVGAHIPIAMTFQPCMNVLKTWDDEIVRRQKL--GHEIVLVLEFNETSKKVKALDLVLSGFYDKKLRKIGRRFGRMKKHRVWVRILHEFNSDWYPWGTFKEG-NSIPKFKQAYRYIVKRLRKHGAGDNIKFQLSYNARSSGGDK-IDFSKWWPGDAYVDMIMITAYNRAGTLEGTEKPFQQFAEFFPESYKRVAALHPTKPIGISEAGSTDAKGAQAKADWYYNMFKTLKESHAFPRLAQVNFFLEDKIY-DWRLDTREEQTRFGDGM 1165
            RE+++ A   +   F      +KT     + +  L  G ++VLV++F +T      L  +  G YDK L K      +     VWVR +HEFN DWYPWGT+  G N+I  F +AYR++ + L   GA  NIKFQL YN  +   DK   FS WWPGD  VDM++ +AYNRAGT +     +Q + + F   Y ++AAL  + P+G+ E G+    G + KA W  + F        +PR+ Q+ +FLEDK   +W L++ +E   F D +
Sbjct:   41 REEELNAQFQVVTKF----GFIKTMRYPFLVKNYLDQGFKVVLVVQFLDTL--TTNLKQIGDGLYDKYLYKFADELIKDGNREVWVRPMHEFNGDWYPWGTYMGGTNTIQNFIRAYRHVYQVLTAKGA--NIKFQLGYNCVNGANDKKTPFSAWWPGDDVVDMVVCSAYNRAGT-DQFHTQWQTWPDVFQLGYDQMAALPTSAPLGVGEMGTVGMAG-EDKAGWIRDAFAAFPT--LYPRVEQITWFLEDKDDGEWDLNSADEIEAFRDSL 299          
BLAST of jgi.p|Trimin1|348985 vs. uniprot
Match: A0A835YK97_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK97_9STRA)

HSP 1 Score: 159 bits (403), Expect = 3.330e-41
Identity = 106/287 (36.93%), Postives = 148/287 (51.57%), Query Frame = 2
Query:  332 IGVSMGSMAIDDREKQVGAHIPIAMTFQPCMNVLKTWDDEIVRRQKLGHEIVLVLEFNETSKKVKALDLVLS-GFYDKKLRKIGRRF-GRMKKHRVWVRILHEFNSDWYPWGTFKEGNSIPKFKQAYRYIVKRLRKHGAGDNIKFQLSYNARSSGGDKIDFSKW---WPGDAYVDMIMITAYNRAGTLEGTEKPFQQFAEFFPESYKRVAALHPTKPIGISEAGSTDAKGAQAKADWYYNMFKTLKESHAFPRLAQVNFFLEDKIY---DWRLDTREEQTRFGDGMR 1168
            IGV+   M ++  E    ++I   + F   +N    WD  I      G E+VLV +F  T      L+ +   G YD ++  +      +     VW+R LHE N DWYPWG F  GN+   FK AYR+I   L+  G G N KFQL+YN R+   D+  ++ +   +PG  YVDMI+ + YNRAGT       +    +FF  +Y  +A L  T PIGI E GST+  G  ++ADW  + F  +   + FPR+ QV++F  DK     DW L+T EE   F DG R
Sbjct:  126 IGVA-AHMGLNQFEDDYRSNIDAWVKFTD-VNEDMQWDTYIQPVLDQGKEVVLVTQFYPTDGSFDNLNAIAYYGQYDDRINSLADTLLAKGNPSNVWLRPLHEMNGDWYPWGVFSGGNNADAFKNAYRHIHDILK--GRGVNAKFQLAYNCRTP--DQFSYTSFGDLYPGSDYVDMIVCSGYNRAGTPNNNS--WVTLKDFFSGAYDDMAGLSDTVPIGIGETGSTNYYGGNSRADWIRDAFHDI--FYDFPRVEQVDWFFIDKSPESGDWELNTSEEIDAFSDGCR 402          
BLAST of jgi.p|Trimin1|348985 vs. uniprot
Match: A0A835Z9M6_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9M6_9STRA)

HSP 1 Score: 158 bits (400), Expect = 9.200e-41
Identity = 90/233 (38.63%), Postives = 133/233 (57.08%), Query Frame = 2
Query:  473 GHEIVLVLEFNETSKKVKALDLVLSGFYDKKLRKIGRRFGRMKKHRVWVRILHEFNSDWYPWGTFKEGNS-IPKFKQAYRYIVKRLRKHGAGDNIKFQLSYNARSSGGDKIDFSKWWPGDAYVDMIMITAYNRAGTLEGTEKPFQQFAEFFPESYKRVAALHPTKPIGISEAGSTDAKGAQAKADWYYNMFKTLKESHAFPRLAQVNFFLEDKIY-DWRLDTREEQTRFGDGM 1165
            G E+V+V+EF +   K   LDL+  G+YD  L +            V +R LHEFN DWY WGT   GN+ IP F  A+++I +      A  N++FQL+YN +S   D   F+ WWPG  YVDM++ + YNRAG+       +Q F E F  +Y ++AAL+PT P+GI E  + +  G   KA W  + F ++  + AFPRL Q  +FL++K   +W L++ E+   F +G+
Sbjct:  106 GFEVVMVMEFLDDEVKTN-LDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRA--NVQFQLAYNCKSGLNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEAVEWQSFEEMFAPAYAQMAALNPTVPLGIGETSTVELAGYD-KAQWIRDAFASM--ATAFPRLRQATWFLQNKDDGEWDLNSEEQIAAFSEGL 332          
BLAST of jgi.p|Trimin1|348985 vs. uniprot
Match: A0A835YXK1_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXK1_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.250e-39
Identity = 88/239 (36.82%), Postives = 135/239 (56.49%), Query Frame = 2
Query:  479 EIVLVLEFNETSKKVKALDLVLSGFYDKKLRKIGRRFGRMKKHRVWVRILHEFNSDWYPWGTFKEG-NSIPKFKQAYRYIVKRLRKHGAGDNIKFQLSYNARSSGGDKIDFSKWWPGDAYVDMIMITAYNRAGTLEGTEKPFQQFAEFFPESYKRVAALHPTKPIGISEAGSTDAKGAQAKADWYYNMFKTLKESHAFPRLAQVNFFLEDK--IYDWRLDTREEQTRFGDGMRLLGYKA 1186
            ++VLV++    S   ++L  V  G YDK+L      +      R+ +R +HEFN DWY WGT++ G NS   FK+AY ++ +  RK GA  N   QLSYN  +   D+  F +W+PG  +VDM++ +AYNRAG ++   + ++ F + F   YK++AAL   K +G++E G+T + G  +KA W  + FK L   +   R+ +  + L++K    DW L+TR E   FG  MR   Y A
Sbjct:    1 QVVLVIQLR--SHDYRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGA--NAVMQLSYNCVNPNDDQTSFKEWYPGAEHVDMVLCSAYNRAG-IDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTT-SWGGHSKAQWIRDAFKALVNQYT--RVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKYEYAA 231          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348985 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z3A8_9STRA6.220e-268100.00Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A836CKF0_9STRA9.010e-10773.74Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835YLQ0_9STRA1.680e-5537.50Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835YT60_9STRA2.880e-4232.35Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]
A0A835Z4M7_9STRA2.960e-4238.20Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]
A0A835YVC0_9STRA9.820e-4236.44Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]
A0A835YWE9_9STRA1.940e-4136.90Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835YK97_9STRA3.330e-4136.93Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835Z9M6_9STRA9.200e-4138.63Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835YXK1_9STRA2.250e-3936.82Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_33contigContig_33:1030655..1033871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348985|estExt_Genemark1.C_Ctg_330133
DescriptionBelongs to the glycosyl hydrolase 26 family
COG categoryG
Max annot lvl2|Bacteria
EggNOG OGsCOG4124@1|root,COG4124@2|Bacteria
Evalue1.14e-28
Seed ortholog1123400.KB904752_gene841
Hectar predicted targeting categoryother localisation
TranscriptId349307
TrackFilteredModels1
ProteinId348985
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348985gene_6023Tribonema minus UTEX_B_3156 geneContig_33 1030655..1033871 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348985Trimin1|348985|estExt_Genemark1.C_Ctg_330133Tribonema minus UTEX_B_3156 polypeptideContig_33 1030704..1033871 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6023_1exon_6023_1Tribonema minus UTEX_B_3156 exonContig_33 1030655..1031111 +
exon_6023_2exon_6023_2Tribonema minus UTEX_B_3156 exonContig_33 1031688..1031878 +
exon_6023_3exon_6023_3Tribonema minus UTEX_B_3156 exonContig_33 1032278..1032496 +
exon_6023_4exon_6023_4Tribonema minus UTEX_B_3156 exonContig_33 1032829..1033069 +
exon_6023_5exon_6023_5Tribonema minus UTEX_B_3156 exonContig_33 1033770..1033871 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6023UTR5_6023Tribonema minus UTEX_B_3156 five_prime_UTRContig_33 1030655..1030703 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6023CDS_6023Tribonema minus UTEX_B_3156 CDSContig_33 1030704..1031111 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6023 ID=mRNA_6023|Name=jgi.p|Trimin1|348985|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1210bp|location=Sequence derived from alignment at Contig_33:1030655..1033871+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TCGCCAGCTGCCTATAGCTGAAGGTCCTCTGCTCCTCAGCAAAGAGGCCA
TGGCGCAGGCGGAGGTGGCAGCGGCAGCCTTGTGTACACACAGCGACGGC
GTGTCGCTTTCACCGGCGATGACGAAGAAAGCAGCACGACGATGGCCTGC
GGTGCTGGCAGCTGTAGTCGCTGGAGCCCTTATGGTCCTCGCATTGACGA
GTAATGTGAGGAGCAGCAGGAGCAGCCTTTCACGCGTTGACACGGTCATG
GACGAGAGCAGGCAACTCCCCAGCGCTCGCAGCCTGGCGGCAAGCAGAAA
AGCCAAACCTTCGAAGAAGATTAAGCCAACCATAGGCGTGTCGATGGGCT
CGATGGCCATAGATGACAGAGAGAAGCAGGTGGGGGCACACATTCCCATC
GCCATGACCTTCCAGCCATGCATGAACGTGCTCAAGACCTGGGATGACGA
AATAGTGCGCCGCCAAAAGCTCGGCCACGAGATCGTGCTCGTGCTGGAAT
TCAATGAGACGTCCAAGAAGGTGAAGGCGCTGGACCTCGTCCTCAGCGGC
TTTTACGACAAGAAGCTGCGCAAGATCGGCCGCCGCTTCGGGCGCATGAA
GAAGCACCGCGTGTGGGTGCGCATCCTCCACGAGTTCAACTCCGACTGGT
ACCCGTGGGGCACCTTCAAGGAGGGCAACAGCATCCCCAAGTTCAAGCAG
GCGTACCGCTACATCGTCAAGCGCCTGCGCAAGCACGGCGCGGGCGACAA
CATCAAGTTCCAGCTGTCGTACAACGCGCGCTCGTCCGGCGGCGACAAGA
TCGACTTCAGCAAGTGGTGGCCCGGAGACGCATACGTCGACATGATCATG
ATCACCGCCTACAACAGGGCGGGCACGCTGGAGGGCACTGAAAAGCCCTT
CCAGCAGTTTGCCGAGTTCTTCCCGGAGTCGTACAAGCGCGTGGCGGCGC
TCCACCCCACCAAGCCCATTGGCATCTCCGAGGCGGGCAGCACGGACGCC
AAGGGCGCCCAGGCCAAGGCGGACTGGTACTACAACATGTTCAAGACGCT
CAAGGAGTCGCACGCGTTCCCGCGCCTCGCGCAGGTCAACTTCTTCCTGG
AGGACAAGATCTACGACTGGCGCCTCGACACGCGCGAGGAGCAGACGCGC
TTCGGCGACGGCATGCGCCTGCTAGGCTACAAGGCTATCAAGCGCGACGG
AGAGTCGTAG
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protein sequence of jgi.p|Trimin1|348985

>Trimin1|348985|estExt_Genemark1.C_Ctg_330133 ID=Trimin1|348985|estExt_Genemark1.C_Ctg_330133|Name=jgi.p|Trimin1|348985|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=387bp
MAQAEVAAAALCTHSDGVSLSPAMTKKAARRWPAVLAAVVAGALMVLALT
SNVRSSRSSLSRVDTVMDESRQLPSARSLAASRKAKPSKKIKPTIGVSMG
SMAIDDREKQVGAHIPIAMTFQPCMNVLKTWDDEIVRRQKLGHEIVLVLE
FNETSKKVKALDLVLSGFYDKKLRKIGRRFGRMKKHRVWVRILHEFNSDW
YPWGTFKEGNSIPKFKQAYRYIVKRLRKHGAGDNIKFQLSYNARSSGGDK
IDFSKWWPGDAYVDMIMITAYNRAGTLEGTEKPFQQFAEFFPESYKRVAA
LHPTKPIGISEAGSTDAKGAQAKADWYYNMFKTLKESHAFPRLAQVNFFL
EDKIYDWRLDTREEQTRFGDGMRLLGYKAIKRDGES*
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mRNA from alignment at Contig_33:1030655..1033871+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6023 ID=mRNA_6023|Name=jgi.p|Trimin1|348985|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3217bp|location=Sequence derived from alignment at Contig_33:1030655..1033871+ (Tribonema minus UTEX_B_3156 )
TCGCCAGCTGCCTATAGCTGAAGGTCCTCTGCTCCTCAGCAAAGAGGCCA TGGCGCAGGCGGAGGTGGCAGCGGCAGCCTTGTGTACACACAGCGACGGC GTGTCGCTTTCACCGGCGATGACGAAGAAAGCAGCACGACGATGGCCTGC GGTGCTGGCAGCTGTAGTCGCTGGAGCCCTTATGGTCCTCGCATTGACGA GTAATGTGAGGAGCAGCAGGAGCAGCCTTTCACGCGTTGACACGGTCATG GACGAGAGCAGGCAACTCCCCAGCGCTCGCAGCCTGGCGGCAAGCAGAAA AGCCAAACCTTCGAAGAAGATTAAGCCAACCATAGGCGTGTCGATGGGCT CGATGGCCATAGATGACAGAGAGAAGCAGGTGGGGGCACACATTCCCATC GCCATGACCTTCCAGCCATGCATGAACGTGCTCAAGACCTGGGATGACGA AATAGTGGTAAGTCCGTTATACATGCCTTGACGCGCGTTTTACAAGGGTT GCACCAGGCTCACGTGCTCCTGACTCAGGTGGCAGCAGCTTGGTGCAGCC CCGCTTCACGATGCCTTTGCCACTGTCATGTTGACGCGAAAACAACATTT GCGCCTGGTTCAATGTGCCCGCCTTGCGTCGTACACACACAGAAACACAC ACTTTTTCAGTTTGTTTTTGAATGTAGATGCGATTGGTAAGAATTGATAT GCTGTTCTTGGAGCTGTACGATAGCAAAATAACATCGAACGTGCAACTGC TGCGAGCAGGAACGGCAGCAAATCCTGTCGTGCATGAGAGACTTGACACG ATTCATTCCTCTGACCGAATGAGTGTGCTCTTGACTGCCCCGTACATGAC TGCACTAACCCAGCAGATCTTGGCGTTGGCTTTCTTCTCATCACCGCTGT GCAGACGACACATCAGCACTGCGCAGCACCAGCAGCACCTGGCCTCAGCA TGACGAGCGCACTCATGTACCTAAAATTGCGTTCTGACTCTATCACCGCA ACCTCCGCGCGCCCGCCCCTCCCGCCGCCGCAGCGCCGCCAAAAGCTCGG CCACGAGATCGTGCTCGTGCTGGAATTCAATGAGACGTCCAAGAAGGTGA AGGCGCTGGACCTCGTCCTCAGCGGCTTTTACGACAAGAAGCTGCGCAAG ATCGGCCGCCGCTTCGGGCGCATGAAGAAGCACCGCGTGTGGGTGCGCAT CCTCCACGAGTTCAACTCCGACTGGTACGATGCTGCGTTTCGGGCACACT GGCGAAGTGCGCTGCTGGGACTGTCACCTGCATTGCAATGATTGTATCGC AGCAGTCGTGGCTCAGGCGGATGGTGTGCTTGCTACGGGTGTGTGGTCGG TTGCGCAAGCGACTATGTACTTGCCTTCGCACTCTTCATGACTGCCAGAT CCAGAAGGCCCCATCATGTCCGCCCAGCACGCATCTGCACCTGACTTGCA ACACACACGCGCCGGCCTAATGTTTTTGCCGGTTATGTTGATGCTGACCA CTCCAGGATCAGCATGAACTCTTGCTGACTCCCATCACAGCCAGCCAGAT GCGACCCAAAGTGCGTGTCGACGATTGGCTTGACGAATACTTCGCGCGGT GCCTTGCCATCGGACGTGATCAGGTACCCGTGGGGCACCTTCAAGGAGGG CAACAGCATCCCCAAGTTCAAGCAGGCGTACCGCTACATCGTCAAGCGCC TGCGCAAGCACGGCGCGGGCGACAACATCAAGTTCCAGCTGTCGTACAAC GCGCGCTCGTCCGGCGGCGACAAGATCGACTTCAGCAAGTGGTGGCCCGG AGACGCATACGTCGACATGATCATGATCACCGCCTACAACAGGTGCGCTG CGCGCTGCGATACAGTACAGGGCCCGGTACAAAGGGCAGTGCTCAAATTG TCACAGCGCTCGACGGTGCCCCAGGTAAACGACGAGCCCGGGGGCTGTTC TCATGACAACACGGCGCAGCGTGCTCACGACTACATCCACCGATGCCTGA CTGTCCAGCAATGCCGCACCCATCAGAACCACTGCTTTAGTCTGAGGCAC CGCGCATCGCTCTTTTGGATTGCGCGCCCATCAACCGCGTTGCTGACGTT TCCCCTGAGGTACTGCAGGATTTGAACCCGTGACCCGTTGATTAACAGCC GACCCCTCCACCGCTGCGCCGCAGGGCGGGCACGCTGGAGGGCACTGAAA AGCCCTTCCAGCAGTTTGCCGAGTTCTTCCCGGAGTCGTACAAGCGCGTG GCGGCGCTCCACCCCACCAAGCCCATTGGCATCTCCGAGGCGGGCAGCAC GGACGCCAAGGGCGCCCAGGCCAAGGCGGACTGGTACTACAACATGTTCA AGACGCTCAAGGAGTCGCACGCGTTCCCGCGCCTCGCGCAGGTCAACTTC TTCCTGGAGGACAAGGTGCGCGCGCCGACGCTGCTGCTGCTGCGGCAGCG CTCGACAGTCGCCGCCCGCGCGATCGCGCGCTGCGCTTGAGCGTGTTTCG CATCCCGCGTGGGGGGTGGCGCTGGTGCTGCGGACCTTGTCGCACAACAA CAGCCCCGGCGTAGGAGAACTCAAACTGCTGCAGCATGTCGGTCATGTGG GGGTAGCGGGCTCTGCTGTGCTCAGCGGCGGTGGCAGCGCTCGGCAGGGG GGGGGGGGGGGGGGGCAGAACAGTTGAACTTCAACTGAGCAAAACAAGCG GCGTGCTTGGGGGCGGGGGCGGAGGTTCAGCTTTGATGCATATGGGCCAG CGGGAAAGCGGCAAACAGGCGAGGCAAACAGGCGCACCAACCCTTGGATG AATCGGCTACAGTGATACATAGCCTGGGGTGACACTGGCACAGGCGGACA CCACAATGCCCACAGCTGCAGCAGTCTCATTGCTGTAAAAAAAACTTTCC GTGCAAAGCTTCTCTGCTCCAGGTAAAAACCATGTTGGATCGTCAGGTCC TCGTCTGCTATGGTTCAGCAACTCTACTCTGTCAAGTACAATGCACCTGC AATCATACAAGCGCGCACATTGCAGAAGACTCAGCGCCGCTCACTCTGCG CGCACGCTTCTGCTGCTAACTTTCTGCCACTTTTCCGCCCGCCCCCCCCC CTTCCCCGTTGGCAGATCTACGACTGGCGCCTCGACACGCGCGAGGAGCA GACGCGCTTCGGCGACGGCATGCGCCTGCTAGGCTACAAGGCTATCAAGC GCGACGGAGAGTCGTAG
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Coding sequence (CDS) from alignment at Contig_33:1030655..1033871+

>mRNA_6023 ID=mRNA_6023|Name=jgi.p|Trimin1|348985|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1161bp|location=Sequence derived from alignment at Contig_33:1030655..1033871+ (Tribonema minus UTEX_B_3156 )
ATGGCGCAGGCGGAGGTGGCAGCGGCAGCCTTGTGTACACACAGCGACGG
CGTGTCGCTTTCACCGGCGATGACGAAGAAAGCAGCACGACGATGGCCTG
CGGTGCTGGCAGCTGTAGTCGCTGGAGCCCTTATGGTCCTCGCATTGACG
AGTAATGTGAGGAGCAGCAGGAGCAGCCTTTCACGCGTTGACACGGTCAT
GGACGAGAGCAGGCAACTCCCCAGCGCTCGCAGCCTGGCGGCAAGCAGAA
AAGCCAAACCTTCGAAGAAGATTAAGCCAACCATAGGCGTGTCGATGGGC
TCGATGGCCATAGATGACAGAGAGAAGCAGGTGGGGGCACACATTCCCAT
CGCCATGACCTTCCAGCCATGCATGAACGTGCTCAAGACCTGGGATGACG
AAATAGTGCGCCGCCAAAAGCTCGGCCACGAGATCGTGCTCGTGCTGGAA
TTCAATGAGACGTCCAAGAAGGTGAAGGCGCTGGACCTCGTCCTCAGCGG
CTTTTACGACAAGAAGCTGCGCAAGATCGGCCGCCGCTTCGGGCGCATGA
AGAAGCACCGCGTGTGGGTGCGCATCCTCCACGAGTTCAACTCCGACTGG
TACCCGTGGGGCACCTTCAAGGAGGGCAACAGCATCCCCAAGTTCAAGCA
GGCGTACCGCTACATCGTCAAGCGCCTGCGCAAGCACGGCGCGGGCGACA
ACATCAAGTTCCAGCTGTCGTACAACGCGCGCTCGTCCGGCGGCGACAAG
ATCGACTTCAGCAAGTGGTGGCCCGGAGACGCATACGTCGACATGATCAT
GATCACCGCCTACAACAGGGCGGGCACGCTGGAGGGCACTGAAAAGCCCT
TCCAGCAGTTTGCCGAGTTCTTCCCGGAGTCGTACAAGCGCGTGGCGGCG
CTCCACCCCACCAAGCCCATTGGCATCTCCGAGGCGGGCAGCACGGACGC
CAAGGGCGCCCAGGCCAAGGCGGACTGGTACTACAACATGTTCAAGACGC
TCAAGGAGTCGCACGCGTTCCCGCGCCTCGCGCAGGTCAACTTCTTCCTG
GAGGACAAGATCTACGACTGGCGCCTCGACACGCGCGAGGAGCAGACGCG
CTTCGGCGACGGCATGCGCCTGCTAGGCTACAAGGCTATCAAGCGCGACG
GAGAGTCGTAG
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