mRNA_5969 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150914
Unique NamemRNA_5969
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|150914 vs. uniprot
Match: A0A836CDB4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDB4_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.860e-30
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 
Query:    1 KHCEFDGCIVLPTFGFQGQAKRFCGRHKLDGMLDLKSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESEGKSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDGGPARVCSRHRREGMIKM 441
            KHCEFDGCIVLPTFGFQGQAKRFCGRHKLDGMLDLKSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESEGKSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDGGPARVCSRHRREGMIKM
Sbjct:    1 KHCEFDGCIVLPTFGFQGQAKRFCGRHKLDGMLDLKSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESEGKSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDGGPARVCSRHRREGMIKM 147
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BLAST of jgi.p|Trimin1|150914 vs. uniprot
Match: A0A836C8E4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8E4_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 6.070e-14
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 KHCEFDGCIVLPTFGFQGQAKRFCGRHKLDGMLDLKSKR 117
            KHCE +GCIVLPTFG+ G AKRFC RH+L GMLDLKSKR
Sbjct:    1 KHCEREGCIVLPTFGYAGAAKRFCARHRLAGMLDLKSKR 39
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150914 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CDB4_9STRA1.860e-30100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836C8E4_9STRA6.070e-1479.49Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_33contigContig_33:612766..613206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150914|gw1.33.163.1
Max annot lvl2759|Eukaryota
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Evalue1.53e-05
Seed ortholog248742.XP_005649603.1
Hectar predicted targeting categoryother localisation
TranscriptId151236
TrackFilteredModels1
ProteinId150914
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150914gene_5969Tribonema minus UTEX_B_3156 geneContig_33 612766..613206 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5969_1exon_5969_1Tribonema minus UTEX_B_3156 exonContig_33 612766..613206 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5969CDS_5969Tribonema minus UTEX_B_3156 CDSContig_33 612766..613206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150914Trimin1|150914|gw1.33.163.1Tribonema minus UTEX_B_3156 polypeptideContig_33 612766..613206 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5969 ID=mRNA_5969|Name=jgi.p|Trimin1|150914|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=441bp|location=Sequence derived from alignment at Contig_33:612766..613206+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGCACTGCGAGTTCGACGGCTGCATCGTGCTGCCGACGTTCGGCTTCCA
GGGCCAGGCGAAGCGCTTCTGCGGGCGGCACAAGCTCGATGGCATGCTGG
ATTTGAAGTCAAAGCGCTGCGAGGCGCCGGGCTGCTGCGTCGTGCCGAGC
TTCGGCTTCGAGGGCGGCACGCGCCAGTTCTGCGGCCAGCACAAGCTCGG
CGGCATGGTCAACATGCGCGGCAAGCGCTGCGAGGCGCCCGGCTGCTCGA
CGTCGCCGTCCTTCGGCTGGGAGTCGGAGGGCAAGTCGCGCTACTGCGCG
CGCCACCGCGCCGACGCCATGGTCGACCTCATGCACAAGCGCTGCGAGGA
GGCGGACTGTGTCGTGCGCCCGATCTACGGCTTCGACGGCGGCCCCGCGC
GCGTCTGCTCGCGCCACCGCCGCGAGGGCATGATCAAGATG
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protein sequence of jgi.p|Trimin1|150914

>Trimin1|150914|gw1.33.163.1 ID=Trimin1|150914|gw1.33.163.1|Name=jgi.p|Trimin1|150914|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=147bp
KHCEFDGCIVLPTFGFQGQAKRFCGRHKLDGMLDLKSKRCEAPGCCVVPS
FGFEGGTRQFCGQHKLGGMVNMRGKRCEAPGCSTSPSFGWESEGKSRYCA
RHRADAMVDLMHKRCEEADCVVRPIYGFDGGPARVCSRHRREGMIKM
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mRNA from alignment at Contig_33:612766..613206+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5969 ID=mRNA_5969|Name=jgi.p|Trimin1|150914|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=441bp|location=Sequence derived from alignment at Contig_33:612766..613206+ (Tribonema minus UTEX_B_3156 )
AAGCACTGCGAGTTCGACGGCTGCATCGTGCTGCCGACGTTCGGCTTCCA
GGGCCAGGCGAAGCGCTTCTGCGGGCGGCACAAGCTCGATGGCATGCTGG
ATTTGAAGTCAAAGCGCTGCGAGGCGCCGGGCTGCTGCGTCGTGCCGAGC
TTCGGCTTCGAGGGCGGCACGCGCCAGTTCTGCGGCCAGCACAAGCTCGG
CGGCATGGTCAACATGCGCGGCAAGCGCTGCGAGGCGCCCGGCTGCTCGA
CGTCGCCGTCCTTCGGCTGGGAGTCGGAGGGCAAGTCGCGCTACTGCGCG
CGCCACCGCGCCGACGCCATGGTCGACCTCATGCACAAGCGCTGCGAGGA
GGCGGACTGTGTCGTGCGCCCGATCTACGGCTTCGACGGCGGCCCCGCGC
GCGTCTGCTCGCGCCACCGCCGCGAGGGCATGATCAAGATG
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Coding sequence (CDS) from alignment at Contig_33:612766..613206+

>mRNA_5969 ID=mRNA_5969|Name=jgi.p|Trimin1|150914|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=441bp|location=Sequence derived from alignment at Contig_33:612766..613206+ (Tribonema minus UTEX_B_3156 )
AAGCACTGCGAGTTCGACGGCTGCATCGTGCTGCCGACGTTCGGCTTCCA
GGGCCAGGCGAAGCGCTTCTGCGGGCGGCACAAGCTCGATGGCATGCTGG
ATTTGAAGTCAAAGCGCTGCGAGGCGCCGGGCTGCTGCGTCGTGCCGAGC
TTCGGCTTCGAGGGCGGCACGCGCCAGTTCTGCGGCCAGCACAAGCTCGG
CGGCATGGTCAACATGCGCGGCAAGCGCTGCGAGGCGCCCGGCTGCTCGA
CGTCGCCGTCCTTCGGCTGGGAGTCGGAGGGCAAGTCGCGCTACTGCGCG
CGCCACCGCGCCGACGCCATGGTCGACCTCATGCACAAGCGCTGCGAGGA
GGCGGACTGTGTCGTGCGCCCGATCTACGGCTTCGACGGCGGCCCCGCGC
GCGTCTGCTCGCGCCACCGCCGCGAGGGCATGATCAAGATG
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